Group II introns in the bacterial world

Molecular Microbiology

Volumn 38, Issue 5, 2000, Pages 917-926

  Martinez Abarca F ^a   Toro, N ^a  

^a CSIC   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA;

GENOME; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; RNA STRUCTURE; SHORT SURVEY; SPLICEOSOME;

BACTERIA; BACTERIAL PROTEINS; BASE SEQUENCE; GENE TRANSFER, HORIZONTAL; INTRONS; PHYLOGENY; RNA, BACTERIAL;

EID: 0034535773     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2000.02197.x     Document Type: Short Survey

References (52)

1. Intron phylogeny: A new hypothesis
2. Intervening sequence in the thymidylate synthase gene of bacteriophage T4
3. Recombinational exchanges at the capsular polysaccharide biosynthetic locus lead to frequent serotype changes among natural isolates of Streptococcus pneumoniae
4. Tight binding of the 5′ exon to domain I of a group II self-splicing intron requires completion of the intron active site
5. Retrohoming of a bacterial group II intron: Mobility via complete reverse splicing, independent of homologous recombination
6. Retrotransposition of a bacterial group II intron
7. Retrohoming: cDNA-mediated mobility of group II introns requires a catalytic RNA
8. Origin and evolutionary relationships of retroelements
9. Mobility of yeast mitochondrial group II introns: Engineering a new site specificity and retrohoming via full reverse splicing
10. Group II self-splicing introns in bacteria
11. Multiple group II self-splicing introns in mobile DNA from Escherichia coli
12. Self-splicing group I and group II introns encode homologous (putative) DNA endonucleases of a new family
13. Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA
14. Group II introns designed to insert into therapeutically relevant DNA target sites in human cells
15. Structure analysis of a class II transposon encoding the mercury resistance of the Gram-positive bacterium Bacillus megaterium MB1, a strain isolated from Minamata Bay, Japan
16. Group II introns: Elaborate ribozymes
17. Molecular genetic analysis of the Tn5041 transposition system
18. On the identification of group II introns in nucleotide sequence data
19. Unusual insertion element polymorphisms in the promoter and terminator regions of the mucAB-like genes of R471a and R466b
20. Introns as mobile genetic elements
21. Group I and group II ribozymes as RNPs: Clues to the past and guides to the future
22. Evolution of retrotransposons by acquisition or deletion of retrovirus-like genes
23. Complete nucleotide sequences of 93-kb and 3.3-kb plasmids of an enterohemorrhagic Escherichia coli O157:H7 derived from Sakai outbreak
24. The age and evolution of non-LTR retrotransposable elements
25. Characterization and splicing in vivo of a Sinorhizobium meliloti group II intron associated with particular insertion sequences of the IS630-Tc 1/IS3 retroposon superfamily
26. Homing of a bacterial group II intron with an intron-encoded protein lacking a recognizable endonuclease domain
27. A bacterial group II intron encoding reverse transcriptase, maturase and DNA endonuclease activities: Biochemical demonstration of maturase activity and insertion of new genetic information within the intron
28. Structure and activities of group II introns
29. Comparative and functional anatomy of group II catalytic introns - A review
30. Splicing of a group II intron involved in the conjugative transfer of pRS01 in Lactoccoci
31. Homing of a group II intron from Lactococcus lactis subsp. lactis ML3
32. Evolutionary relationships among group II intron-encoded proteins and identification of a conserved domain that may be related to maturase function
33. Rules for DNA target site recognition by a lactococcal group II intron enable retargeting of the intron to specific DNA sequences
34. A group II intron in a conjugative transposon from the Gram-positive bacterium Clostridium difficile
35. Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes
36. The recent origins of introns
37. Mutation of the conserved first nucleotide of a group II intron from yeast mitochondrial DNA reduces the rate but allows accurate splicing
38. Catalytically critical nucleotides in domain 5 of a group II intron
39. Use of a novel approach, termed Island probing, identifies the Shigella flexneri she pathogenicity island which encodes a homolog of the immunoglobin A protease-like family of proteins
40. Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199
41. RNA and protein catalysis in group II intron splicing and mobility reactions using purified components
42. Five easy pieces
43. Splicing of a group II intron in a functional transfer gene of Lactococcus lactis
44. Amino acid sequence motif of group I intron endonucleases is conserved in open reading frames of group II introns
45. Nucleotide genetic analysis of the chromosome of alkaliphilic Bacillus halodurans C-125
46. Complete DNA sequence and structural analysis of the enteropathogenic Escherichia coli adherence factor plasmid
47. Origin and evolution of retroelements based upon their reverse transcriptase sequences
48. A reverse transcriptase/maturase promotes splicing by binding at its own coding segment in a group II intron RNA
49. Group II intron mobility in yeast mitochondria: Target DNA primed reverse transcription activity of al1 and reverse splicing into DNA transposition sites in vitro
50. Group II intron from Pseudomonas alcaligenes NCBI 9867 (P25X): Entrapment in plasmid RP4 and sequence analysis
51. Group II intron mobility occurs by target DNA-primed reverse transcription
52. A group II intron RNA is a catalytic component of a DNA endonuclease involved in intron mobility