Epoxyalkyl glycosides of D-xylose and xylo-oligosaccharides are active-site markers of xylanases from glycoside hydrolase family 11, not from family 10

Biochemical Journal

Volumn 347, Issue 3, 2000, Pages 865-873

  Ntarima, Patricia ^a   Nerinckx, Wim ^a   Klarskov, Klaus ^a   Devreese, Bart ^a   Bhat, Mahalingeshwara K ^b   Van Beeumen, Jozef ^a   Claeyssens, Marc ^a  

^a GHENT UNIVERSITY   (Belgium)

^b INSTITUTE OF FOOD RESEARCH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALKYL GROUP; CARBOXYL GROUP; EPOXIDE; GLUTAMIC ACID; GLYCOSIDASE; OLIGOSACCHARIDE; PYRANOSIDE; XYLAN ENDO 1,3 BETA XYLOSIDASE; XYLOSE;

ARTICLE; BINDING KINETICS; CLOSTRIDIUM THERMOCELLUM; COMPETITIVE INHIBITION; CONTROLLED STUDY; ENZYME ACTIVE SITE; ENZYME INACTIVATION; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN FAMILY; STOICHIOMETRY; STRUCTURE ACTIVITY RELATION; THERMOASCUS; TRICHODERMA REESEI;

ALKYLATION; ASCOMYCOTA; BINDING SITES; BINDING, COMPETITIVE; CLOSTRIDIUM; ENZYME INHIBITORS; EPOXY COMPOUNDS; GLUTAMIC ACID; GLYCOSIDES; KINETICS; LIGANDS; MASS SPECTROMETRY; MOLECULAR WEIGHT; OLIGOSACCHARIDES; PEPTIDE FRAGMENTS; SUBSTRATE SPECIFICITY; TRICHODERMA; XYLAN ENDO-1,3-BETA-XYLOSIDASE; XYLOSE; XYLOSIDASES;

EID: 0034194545     PISSN: 02646021     EISSN: None     Source Type: Journal    
DOI: 10.1042/0264-6021:3470865     Document Type: Article

References (50)

1. 1 Bennet, N A., Ryan, J., Biely, P., Vršanská, M., Kremnicky. L., Macris, B. J., Kekos, D., Christakopoulos, P., Claeyssens, M., Nerinckx, W. et al. (1998) Carbohydr. Res. 306, 445-455
2. 2 Davies, G. and Henrissat, B. (1995) Structure 3, 853-859
3. 3 Nitta, Y., Isoda, Y., Toda, H. and Sakiyama, F. (1989) J. Biochem. (Tokyo) 105, 573-576
4. 4 Macarron, R., Van Beeumen, J., Henrissat, B., de la Mata, I. and Claeyssens, M (1993) FEBS Lett. 316, 137-140
5. 5 Withers, S. G and Aebersold, R. (1995) Protein Sci. 4, 361-372
6. 6 Svensson, B and Søgaard, M. (1993) J. Biotechnol. 29, 1-37
7. 7 Wakarchuk, W. W., Campbell, R. L., Sung, W. L., Davoodi, J. and Yaguchi, M. (1994) Protein Sci 3, 467-475
8. 8 Henrissal, B. (1991) Biochemistry 280, 309-316
9. 9 Henrissat, B. and Bairoch, A. (1993) Biochem. J. 239, 781-788
10. 10 Henrissat, B. and Bairoch, A. (1996) Biochem. J. 316, 695-696
11. 11 Claeyssens, M. and Henrissat, B. (1992) Protein Sci. 1, 1293-1297
12. 12 Biely, P., Kluepfer, D., Morosoli, R. and Shareck, F. (1993) Biochim. Biophys. Acta 1162, 246-254
13. 13 Törrönen, A. and Rouvinen, J. (1997) J. Biotechnol. 57, 137-149
14. 14 Biely, P., Vršanská, M., Tenkanen, M. and Kluepfel, D. (1997) J. Biotechnol. 57, 151-166
15. 15 Coutinho, P. M. and Henrissat, B. (1999) in Recent Advances in Carbohydrate Bioengineering (Gilbert, H. J., Davies, G., Henrissat, B. and Svensson, B., eds.), pp. 3-12, The Royal Society of Chemistry, Cambridge
16. 16 Coutinho, P. M. and Henrissat, B. (1999) in Genetics, Biochemistry and Ecology of Cellulose Degradation (Ohmya, K., Hayashi, K., Sakka, K., Kobayashi, Y., Karita, S. and Kimura, T., eds.), pp. 15-23, Uni Publishers Co., Tokyo
17. 17 Biely, P., Vršanská, M. and Krátký, Z. (1981) Eur. J. Biochem. 119, 565-571
18. 18 Törrönen, A., Kubicek, C. P. and Henrissat, B. (1993) FEBS Lett 321, 135-139
19. 19 Törrönen, A., Harkki, A. and Rouvinen, J. (1994) EMBO J 13, 2493-2501
20. 20 Gebler, J. C., Gilkes, N. R., Claeyssens, M., Wilson, D. B., Béguin, P., Wakarchuk, W W., Kilburn, D. G., Miller, R. C., Warren, R. A. J. and Withers, S. G. (1992) J. Biol. Chem. 267, 12559-12561
21. 21 White, A., Tult, D., Johns, K., Withers, S. G. and Rose, R. R. (1996) Nat. Struct. Biol. 3, 149-154
22. 22 Notenboom, V., Birsan, C., Rose, D. R., Warren, R. A. J. and Withers, S. G. (1998) Nat. Struct. Biol. 5, 812-818
23. 23 Havukainen, R., Törrönen, A., Laitinen, T. and Rouvinen, J. (1996) Biochemistry 35, 9617-9624
24. 24 Gruber, K., Klintschar, G., Hayn, M., Schlacher, A., Steiner, W. and Kratky, C. (1998) Biochemistry 37, 13475-13485
25. 25 Klarskov, K., Piens, K., Stahlberg, J., Hoj, P. B., Van Beeumen, J. and Claeyssens, M. (1997) Carbohydr. Res. 304, 143-154
26. 26 De Bruyne, C. K. and Loontiens, F. G. (1966) Nature (London) 209, 396-397
27. 27 Ferrer Sabat, C., Exero Agnesti, P. and Bemporad Canjato, M. (1976) Spanish Patent 430 636, Laboratories Ferrer S. L
28. 28 Schmidt, R. R. and Jung, K.-H. (1997) in Preparative Carbohydrate Chemistry (Hanessian, S., ed.), pp. 283-308, Marcel Dekker, New York
29. 29 Bhat, M. K., Parry, N. J., Kalogiannis, S., Beever, D. E., Owen, E., Nerinckx, W. and Claeyssens, M. (1998) in Carbohydrases from Trichoderma reesei and Other Organisms; Proceedings of the Tricel '97 meeting held in Ghent, Belgium, 28-31 August 1997 (Claeyssens, M., Nerinckx, W. and Piens, K., eds.). pp. 102-112, The Royal Society of Chemistry, Cambridge
30. 30 Törrönen, A., Harkki, A. and Kubicek, C. P. (1992) Bio/Technology 10, 1461-1465
31. 31 Grépinet, O., Chebrou, M.-C. and Béguin, P. (1988) J. Bacteriol 170, 4576-4581
32. 32 Segel, I. H. (1975) Biochemical Calculations, pp. 208-323, Wiley & Sons, Chichester
33. 33 Davies, G. J., Wilson, K. S. and Henrissat, B. (1997) Biochem J. 321, 557-559
34. 34 Natesh, R., Bhanumoorthy, P., Vithayathil, P. J., Sekar, K., Ramakumar, S. and Viswamitra, M. A. (1999) J. Mol. Biol. 288, 999-1012
35. 35 Lo Leggio, L., Kalogiannis, S., Bhat, M. K. and Pickersgill, R. W. (1999) Proteins Struct. Funct. 36, 295-306
36. 36 Dominguez, R., Souchon, H., Spinelli, S., Dauter, Z., Wilson, K. S., Chauvaux, S., Beguin, P. and Alzari, P. M. (1994) Nat. Struct. Biol. 2, 569-576
37. 37 Derewenda, U., Swenson, L., Green, R., Wei. Y., Morsoli, R., Shareck, F., Kleupfel, D. and Derewenda, Z. S. (1994) J. Biol. Chem. 269, 20811-20814
38. 38 Harris, G. W., Jenkins, J. A., Connerton, I., Cummings, N., Lo Leggio, L., Scott, M., Hazlewood, G. P., Laurie, J. I., Gilbert, H. J. and Pickersgill, R. W. (1994) Structure 2, 1107-1116
39. 39 Schmidt, A., Gübitz, G. M. and Kratky, C. (1999) Biochemistry 38, 2403-2412
40. 40 Charnock, S. J., Spurway, T. D., Xie, H., Beylot, M.-H., Virden, R., Warren, R. A. J., Hazlewood, G. P. and Gilbert, H. J. (1998) J. Biol. Chem. 273, 32187-32199
41. 41 Biely, P., Krátký, Z and Vršanská, M.(1981) Eur. J. Biochem. 119, 559-564
42. 42 Lo Leggio, L. and Pickersgill, R. W. (1999) Enzyme Microb. Technol 25, 701-709
43. 43 Bray, M. R. and Clarke, A. J. (1992) Eur. J. Biochem. 204, 191-196
44. 44 Roberge, M., Shareck, F., Morosoli, R., Kluepfel, D. and Dupont, C. (1999) Protein Eng. 12, 251-257
45. 45 White, A., Withers, S. G., Gilkes, N. R. and Rose, D. R. (1994) Biochemistry 33, 12546-12552
46. 46 Schmidt, A., Schlacher, A., Steiner, W., Schwab, H. and Kratky, C. (1998) Protein Sci. 7, 2081-2088
47. 47 Sinnott, M. L. (1990) Chem. Rev. 90, 1171-1202
48. 48 Withers, S. G. (1999) Can. J. Chem. 77, 1-11
49. 49 Roepstorff, P. and Fohlman, J. (1984) Biomed. Mass Spectrom. 11, 601-616
50. 50 Biemann, K. (1989) in Protein Sequencing: a Practical Approach (Findlay, J. B. C and Geisow, M. J., eds.), pp. 99-118, IRL Press, Oxford