Class-1 polypeptide chain release factors are structurally and functionally similar to suppressor tRNAs and comprise different structural-functional families of prokaryotic/mitochondrial and eukaryotic/archaebacterial factors

Molecular Biology

Volumn 34, Issue 3, 2000, Pages 363-377

  Kisselev, L L ^a   Oparina, N Yu ^a   Frolova, L Yu ^a  

^a ENGELHARDT INSTITUTE OF MOLECULAR BIOLOGY   (Russian Federation)

Author keywords

Archaebacteria; aRF1; Domain structure; eRF1; Eukaryotes; mtRF; Primary structure; Prokaryotes; Protein biosynthesis; Release factors; RF1; RF2; Suppressor tRNA; Translation termination

Indexed keywords

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; PROKARYOTA;

EID: 0034178948     PISSN: 00268933     EISSN: None     Source Type: Journal    
DOI: 10.1007/BF02759667     Document Type: Article

References (49)

1. 1. Buckingham, R.H., Grentzmann, G., and Kisselev, L., Mol. Microbiol., 1997, vol. 24, pp. 449-456.
2. 2. Kisselev, L. and Frolova, L., Biokhimiya, 1999, vol. 64, pp. 14-24.
3. 3. Kisselev, L., Mol. Biol., 1999, vol. 33, 1054-1062.
4. 4. Tate, W.P., Mansell, J.B., Mannering, S.A., Irvine, J.H., Major L.L., and Wilson, D.N., Biokhimiya, 1999, vol. 64, pp. 1593-1606.
5. 5. Konecki, D.S., Aune, K.S., Tate, W.P., and Caskey, C.T., J. Biol. Chem., 1977, vol. 252, pp. 4514-4520.
6. 6. Frolova, L., Le Goff, X., Rasmussen, H.H., Cheperegin, S., Drugeon, G., Kress, M., Arman, I., Haenni, A.-L., Celis, J.E., Philippe, M., Justesen, J., and Kisselev, L., Nature, 1994, vol. 372, pp. 701-703.
7. 7. Nakamura, Y., Ito, K., Matsumura, K., Kawazu, Y., and Ebihara, K., Biochem. Cell Biol., 1995, vol. 73, pp. 1113-1122.
8. 8. Ito K., Ebihara K., Uno M., Nakamura Y., Proc. Natl. Acad. Sci. USA, 1996, vol. 93, pp. 5443-5448.
9. 9. Frolova, L.Yu., Tsivkovskii, R. Sivolobova, G., Oparina, N., Serpinsky, O., Blinov, V., Tatkov, S., and Kisselev L., RNA, 1999, vol. 5, pp. 1014-1020.
10. 10. Frolova, L. Yu, Merkulova, T.I., and Kisselev, L.L. RNA, 2000, vol. 6, pp. 381-390.
11. 11. Thornton, J.M., Orengo, C.A., Todd, A.E., and Pearl, F.M., J. Mol. Biol., 1999, vol. 293, pp. 333-342.
12. 12. Bu, W.S., Feng, Z.P., Zhang, Z., and Zhang, C.T., Eur. J. Biochem., 1999, vol. 266, pp. 1043-1049.
13. 13. Lechward, K., Zolnierowich, S, and Hemmings, B.A., Biokhimiya, 1999, vol. 64, pp. 1628-1637.
14. 14. Merkulova, T.I., Frolova, L.Y., Lazar, M., Camonis, J., and Kisselev, L., FEBS Lett., 1999, vol. 443, pp. 41-47.
15. 15. Frolova, L.Yu., Simonsen, J.L., Merkulova, T.I., Litvinov, D.Y., Martensen, P.M., Rechinsky, V.O., Camonis, J., Kisselev, L.L., and Justesen, J., Eur. J. Biochem., 1998, vol. 256, pp. 36-44.
16. 16. Cantor, C., Transfer RNA. Structure, Properties and Recognition, Schimmel, P., Soll, D., and Abelson, J., Eds., Cold Spring Harbor Lab. Press, 1979, pp. 363-392.
17. 17. Moffat, J.G. and Tate, W.P., J. Biol. Chem., 1994, vol. 269, pp. 18899-18903.
18. 18. Dirheimer, G., Keith, G., Dumas, P., and Westhof, E., in tRNA: Structure, Biosynthesis, and Function, Soll, D., and RajBhandary, U.L., Eds., Washington D.C.: ASM, 1995, pp. 93-126.
19. 19. McClain, W., in tRNA: Structure, Biosynthesis, and Function, Soil, D. and RajBhandary, U.L., Eds., Washington D.C.: ASM, 1995, pp. 335-347.
20. 20. Pallanck, L., Pak, M., and Schulman, L.H., in tRNA: Structure, Biosynthesis, and Function, Soll, D. and RajBhandary, U.L., Eds., Washington D.C.: ASM, 1995, pp. 371-394.
21. 21. Drugeon, G., Le Goff, X., Frolova, L., Philippe, M., Kisselev, L., and Haenni, A.-L., Nucl. Acids Res., 1997, vol. 25, pp. 2254-2258.
22. 22. LeGoff, X., Philippe, M., and Jean-Jean, O., Mol. Cell. Biol., 1997, vol. 17, pp. 3164-3172.
23. 23. Zhilyaeva, T.I. and Kisselev, L.L., Biokhimiya, 1966, vol. 31, pp. 201-211.
24. 24. Stansfield, I., Jones, K.M., and Tuite, M.F., Trends Biochem. Sci., 1995, vol. 20, pp. 489-491.
25. 25. Nakamura, Y., Ito, K., and Isaksson, L.A., Cell, 1996, vol. 87, pp. 147-150.
26. 26. Clark, B., Kjeldgaard, M., Barciczewski, J., and Sprinzl, M., in tRNA: Structure, Biosynthesis, and Function, Soll, D. and RajBhandary, U.L., Eds., Washington D.C.: ASM, 1995, pp. 423-142.
27. 27. Ito, K., Ebihara, K., and Nakamura, Y., RNA, 1998, vol. 4, pp. 958-972.
28. 28. Ebihara, K. and Nakamura, Y., RNA, 1999, vol. 5, pp. 739-750.
29. 29. Kisselev, L., Biokhimiya, 1999, vol. 64, pp. 1587-1592.
30. 30. Zhouravleva, G., Frolova, L., Le Goff, X., Le Guellec, R., Inge-Vechtomov, S., Kisselev, L., Philippe, M., EMBO J., 1995, vol. 14, pp. 4065-4072.
31. 31. Frolova, L., Le Goff, X., Zhouravleva, G., Davydova, E., Philippe, M., and Kisselev, L., RNA, 1996, vol. 2, pp. 334-341.
32. 32. Freistroffer, D.V., Pavlov, M.Yu., MacDougall, J., Buckingham, R.H., Ehrenberg, M., EMBO J., 1997, vol. 16, pp. 4126-4133.
33. 33. Aevarsson, A., Brazhnikov, E., Garber, M., Zheltonosova, J., Chirgadze, Yu., Al-Karadaghi, S., EMBO J., 1994, vol. 13, pp. 3669-3677.
34. 34. Czworkowski, J., Wang, J., Steitz, T.A., and Moore, P.B., EMBO J., 1994, vol. 13, pp. 3661-3668.
35. 35. Nissen, P., Kjelgaard, M., Thirup, S., Polekhina, G., Reshetnikova, L., Clark, B.E., and Nyborg, J., Science, 1995. vol. 270, pp. 1464-1472.
36. 36. Seltner, M., Al-Karadaghi, S., Hirokawa, G., Kaji, A., and Lilias, A., Science, 1999, vol. 286, pp. 2349-2352.
37. 37. Schimmel, P. and Pibas de Pouplana, L., Cell, 1995, vol. 81, pp. 983-986.
38. 38. Aberg, A., Yaremchuk, A., Tukalo, M., Rasmussen, B., and Cusack, S., Curr. Opin. Struc. Biol., 1997, vol. 7, pp. 881-889.
39. 39. Eriani, G. and Gangloff, J., J. Mol. Biol., 1999, vol. 291, pp. 761-773.
40. 40. Steer, B.A. and Schimmel, P., Proc. Natl. Acad. Sci. USA, 1999, vol. 96, pp. 13644-13649.
41. 41. Karamyshev, A.L., Ito, K., and Nakamura, Y., FEBS Lett., vol. 457, pp. 483-488.
42. 42. Horowitz, S. and Gorovsky, M.A., Proc. Natl. Acad. Sci. USA, 1985, vol. 82, pp. 2452-2455.
43. 43. Ito, K., Uno, M., and Nakamura, Y., Nature, 2000, vol. 403, pp. 680-684.
44. 44. Tate, W., Greuer, B., and BrimaCombe, R., Nucl. Acids Res., 1990, vol. 18, pp. 6537-6544.
45. 45. Brown, C.M. and Tate, W.P., J. Biol. Chem., 1994, vol. 269, pp. 33164-33170.
46. 46. Poole, E.S., Brimacombe, R., and Tate, W.P., RNA, 1997, vol. 3, pp. 974-982.
47. 47. Poole, E.S., Major, L.L., Mannering, S.A., and Tate, W.P., Nucl. Acids Res., 1998, vol. 26, pp. 954-960.
48. 48. Ar'kov, A. and Murgola, E., Biokhimiya, 1999, vol. 64, pp. 1007-1013.
49. 49. Koonin, E.V., Bork, P., and Sander, C., Nucl. Acids Res., 1994, vol. 22, pp. 2166-2167.