Mapping of avirulence genes in the rice blast fungus, Magnaporthe grisea, with RFLP and RAPD markers

Molecular Plant-Microbe Interactions

Volumn 13, Issue 2, 2000, Pages 217-227

  Dioh, Waly ^a   Tharreau, Didier ^b   Notteghem, Jean Loup ^b,d   Orbach, Marc ^c   Lebrun, Marc Henri ^a,e  

^a UNIVERSITÉ PARIS SACLAY   (France)

^b CIRAD   (France)

^c UNIVERSITY OF ARIZONA   (United States)

^d ENSAM   (France)

^e SANOFI   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AVIRULENCE GENE; CHROMOSOMAL LOCALIZATION; COSMID; FUNGAL GENE; GENE LOCATION; GENE PROBE; GENE SEGREGATION; GENETIC CROSS; GENETIC LINKAGE; MOLECULAR CLONING; OLIGONUCLEOTIDE; RANDOM AMPLIFIED POLYMORPHIC DNA; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RICE; TELOMERE; TRANSPOSON;

ANIMALIA; FUNGI; MAGNAPORTHE GRISEA;

EID: 0034141960     PISSN: 08940282     EISSN: None     Source Type: Journal    
DOI: 10.1094/MPMI.2000.13.2.217     Document Type: Article

References (66)

1. Arnau, J., Housego, A. P., and Oliver, R. P. 1994. The use of RAPD markers in the genetic analysis of the plant pathogenic fungus Cladosporium fulvum. Curr. Genet. 25:438-444.
2. Bhattacharyya, M. K., Gonzales, R. A., Kraft, M., and Buzzell, R. I. 1997. A copia-like retrotransposon Tgmr closely linked to the Rps-1k allele that confers race specific resistance of soybean to Phytophthora sojae. Plant Mol. Biol. 34:255-264.
3. Biessmann, H., and Mason, J. M. 1992. Genetics and molecular biology of telomeres. Pages 185-249 in: Advances in Genetics. Vol. 30. Academic Press, New York.
4. Böhm, A., and Zyprian, E. 1998. RAPD marker in grapevine (Vitis spp.) similar to plant retrotransposons. Plant Cell Rep. 17:415-421.
5. Daboussi, M. J., Djeballi, A., Gerlinger, C., Blaiseau, P. L., Bouvier, I., Cassan, M., Lebrun, M.-H., Parisot, D. and Brygoo, Y. 1989. Transformation of seven species of filamentous fungi using the nitrate reductase gene of Aspergillus nidulans. Curr. Genet. 15:453-456.
6. Daboussi, M. J., and Langin, T. 1994. Transposable elements in the fungal plant pathogen Fusarium oxysporum. Genetica 93:49-59.
7. Daboussi, M. J., Langin, T. and Brygoo, Y. 1992. Fot1, a new family of fungal transposable elements. Mol. Gen. Genet. 232:12-16.
8. De Wit, P. J. G. M. 1997. Pathogen avirulence and plant resistance: A key role for recognition. Trends in Plant Science 2:425-458.
9. Dioh, W., Tharreau, D., and Lebrun, M. H. 1997. RAPD-Based screening of genomic libraries for positional cloning. Nucleic Acids Res. 25:5130-5131.
10. Dobinson, K. F., Harris, R. E., and Hamer, J. E. 1992. Grasshopper, a long terminal repeat (LTR) retroelement in the phytopathogenic fungus Magnaporthe grisea. Mol. Plant-Microbe Interact. 6:114-126.
11. Enkerli, J., Bhatt, G., and Covert, S. F. 1997. Nht1, a transposable element cloned from a dispensable chromosome in Nectria haematococca. Mol. Plant-Microbe Interact. 10:742-749.
12. Farman, M. L., and Leong, S. A. 1995. Genetic and physical mapping of telomeres in the rice blast fungus, Magnaporthe grisea. Genetics 140: 479-492.
13. Farman, M. L., and Leong, S. A. 1998. Chromosome walking toward Avr1-CO39 avirulence gene of Magnaporthe grisea. Discrepancy between the physical and genetical maps. Genetics 150:1049-1058.
14. Farman, M. L., Taura, S., and Leong, S. A. 1996. The Magnaporthe grisea DNA fingerprinting probe MGR586 contains the 3′ end of an inverted repeat transposon. Mol. Gen. Genet. 251:675-681.
15. Ghesquière, A., Albar, L., Lorieux, M., Ahmadi, N., Fargette, D., Huang, N., McCouch, S. R., and Notteghem, J. L. 1997. A major quantitative trait locus for rice yellow mottle virus resistance maps to a cluster of blast resistance genes on chromosome 12. Phytopathology 87:1243-1249.
16. Gijzen, M., Förster, H., Coffey, M. D., and Tyler, B. 1996. Cosegregation of Avr4 and Avr6 in Phytophthora sojae. Can. J. Bot. 74: 800-802.
17. Gottschling, D. E. 1992. Telomere-proximal DNA in Saccharomyces cerevisiae is refractory to methyltransferase activity in vivo. Proc. Natl. Acad. Sci. USA 89:4062-4065.
18. Hamer, J. E., Farrall, L., Orbach, M. J., Valent, B., and Chumley, F. G. 1989. Host species-specific conservation of a family of repeated DNA sequences in the genome of a fungal plant pathogen. Proc. Natl. Acad. Sci. USA 86:9981-9985.
19. Hayashi, N. 1994. Rice blast disease in Yunnan Province, China. Distribution and use of fertile rice blast fungus isolated from Yunnan Province in China. JIRCAS Worksh. Pap. 1:22-33.
20. Hayashi, N., Li, C., Li, J., Iwano, M., Naito, H., Yoshino, R., and Kato, H. 1997. Distribution of fertile Magnaporthe grisea fungus pathogenic to rice in Yunnan Province, China. Ann. Phytopathol. Soc. Jpn. 63:316-323.
21. Inoue, H., Nojima, H., and Okayama, H. 1990. High efficiency transformation of Escherichia coli with plasmids. Gene 96:23-28.
22. Joosten, M. H., Cozijnsen, T. J., and De Wit, P. J. G. M. 1994. Host resistance to a fungal tomato pathogen lost by a single base-pair change in an avirulence gene. Nature 367:384-386.
23. Judelson, H. S. 1996. Recent advances in the genetics of Oomycete plant pathogens. Mol. Plant-Microbe Interact. 9:443-449.
24. Kachroo, P., Leong, S. A., and Chattoo, B. B. 1994. Pot2, an inverted repeat transposon from the rice blast fungus Magnaporthe grisea. Mol. Gen. Genet. 245:339-348.
25. Kang, S., Sweigard, J. A., and Valent, B. 1995. The PWL host specificity gene family in the blast fungus Magnaporthe grisea. Mol. Plant-Microbe Interact. 8:939-948.
26. Kato, H., and Yamaguchi, T. 1982. The perfect state of Pyricularia oryzae Cav. from rice plants in culture. Ann. Phytopathol. Soc. Jpn. 48:607-612.
27. Kazan, K., Manners, J. M., and Cameron, D. F. 1993. Inheritance of random amplified polymorphic DNA markers in an interspecific cross in the genus Stylosanthes. Genome 36:50-56.
28. Khush, G. S. 1996. Rice Genetics III. IRRI, Manila, Philippines.
29. Kiyosawa, S., Mackill, D. J., Bonman, J. M., and Tanaka, Y. 1986. An attempt of classification of world's rice varieties based on reaction pattern to blast fungus strains. Bull. Natl. Inst. Agrobiol. Resour. 2: 13-22.
30. Knogge, W. 1996. Fungal infection of plants. Plant Cell 8:1711-1722.
31. Lander, E. S., Green, P., Abrahamson, J., Barlow, A., Daly, M. J., Lincoln, S. E., and Newburg, L. 1987. Mapmaker: An interactive computer package for constructing primary genetic linkage maps of experimental and natural population. Genomics 1:174-181.
32. Levis, C., Fortini, D., and Brygoo, Y. 1997. Flipper, a mobile Fot1-like transposable element in Botrytis cinerea. Mol. Gen. Genet. 254:674-680.
33. Leung, H., Borromeo, E. S., Bernardo, M. A., and Notteghem, J. L. 1988. Genetic analysis of virulence in the rice blast fungus Magnaporthe grisea. Phytopathology 78:1227-1233.
34. Leung, H., and Taga, M. 1989. Magnaporthe grisea (Pyricularia species), the blast fungus. Pages 175-188 in: Genetics of Phytopathogenic Fungi. Advances in Plant Pathology, Vol. 6. R. Sidhu, ed.. Academic Press, New York.
35. Louis, E. J., Naumova, E. S., Lee, A., and Haber, J. 1994. The chromosome end in yeast: Its mosaic nature and influence on recombinational dynamics. Genetics 136:789-802.
36. Mandel, M. A., Crouch, V. W., Gunawardena, U. P., Harper, T. M., and Orbach, M. J. 1997. Physical mapping of the Magnaporthe grisea AVR1-MARA locus reveals the virulent allele contains two deletions. Mol. Plant-Microbe Interact. 10:1102-1105.
37. McCouch, S. R, Nelson, R. J., Tohme, J. and Zeigler, R. S. 1994. Mapping of blast resistance genes in rice. Pages 167-187 in: Rice Blast Disease. R. Zeigler, S. A. Leong, and P. S. Teng, eds. CAB Int., Wallingford, UK.
38. Michelmore, R. W., Paran, I., and Kesseli, R. V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: A rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 88:9828-9832.
39. Miyamoto, M., Ando, I., Rybka, K., Kodama, O., and Kawasaki, S. 1996. High resolution mapping of the Indica-derived rice blast disease resistance genes. I. Pi-b. Mol. Plant-Microbe Interact. 9:6-13.
40. Murray, M. G., and Thompson, W., F. 1990. Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8:4321-4325.
41. 2 using a highly representative rice BAC library. Mol. Gen. Genet. 254:611-620.
42. Nitta, N., Farman, M. L., and Leong, S. A. 1997. Genome organisation of Magnaporthe grisea: Integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements. Theor. Appl. Genet. 95:20-32.
43. Nishimura, M., Nakamura, S., Hayashi, N., Asakawa, S., Shimizu, N., Kaku, H., Hasaebe, A., and Kawasaki, S. 1998. Construction of a BAC library of the rice blast fungus Magnaporthe grisea and finding specific genome regions in which its transposons tend to cluster. Biosci. Biotechnol. Biochem. 62:1515-1521.
44. Notteghem, J. L., and Silué, D. 1992. Distribution of the mating type alleles in Magnaporthe grisea populations pathogenic on rice. Phytopathology 82:421-424.
45. Notteghem, J. L., Tharreau, D., Silué, D., and Roumen, E. 1994. Present knowledge on rice resistance genetics and strategies for analysis of M. grisea pathogenicity and avirulence genes. Pages 155-166 in: Rice Blast Disease. R. Zeigler, S. A. Leong, and P. S. Teng, eds. CAB Int., Wallingford, UK.
46. Orbach, M. J., Chumley, F. G., and Valent, B. 1996. Electrophoretic karyotypes of Magnaporthe grisea pathogens of diverse grasses. Mol. Plant-Microbe Interact. 9:261-271.
47. Ou, S. H. 1985. Rice Diseases. 2nd ed. CAB Int., Wallingford, UK.
48. Rohe, M., Gierlich, A., Hermann, H., Hahn, M., Schmidt, B., Rosahl, S., and Knogge, W. 1995. The race-specific elicitor, NIP1, from the barley pathogen, Rhynchosporium secalis, determines avirulence on host plants of the Rrs1 resistance genotype. EMBO J. 14:4168-4177.
49. Shull, V., and Hamer, J. E. 1994. Genomic structure and variability in Pyricularia grisea. Pages 65-86 in: Rice Blast Disease. R. Zeigler, S. A. Leong, and P. S. Teng eds. CAB Int., Wallingford, UK.
50. Shull, V., and Hamer, J. E. 1996. Rearrangements at a DNA fingerprint locus in the rice blast fungus. Curr. Genet. 30:263-271.
51. Silué, D., Notteghem, J. L. and Tharreau, D. 1992a. Evidence for a gene-for-gene relationship in the Oryza sativa-Magnaporthe grisea pathosystem. Phytopathology 82:577-580.
52. Silué, D., Tharreau, D., and Notteghem, J. L. 1992b. Identification of Magnaporthe grisea avirulence genes to seven rice cultivars. Phytopathology 82:1462-1467.
53. Skinner, D. Z., Budde, A. D., Farman, M. L., Smith, J. R., Leung, H., and Leong, S. A. 1993. Genome organization of Magnaporthe grisea. Genetic map, electrophoretic karyotype and occurrence of repeated DNAs. Theor. Appl. Genet. 87:545-557.
54. Smith, J. R., and Leong, S. A. 1994. Mapping of a Magnaporthe grisea locus affecting rice (Oryza sativa) cultivar specificity. Theor. Appl. Genet. 88:901-908.
55. Sweigard, J. A., Carroll, A. M., Kang, S., Farrall, L., Chumley, F. G., and Valent, B. 1995. Identification, cloning, and characterization of PWL2, a gene for host species specificity in the rice blast fungus. Plant Cell 7:1221-1233.
56. Sweigard, J. A, Valent, B., Orbach, M. J., Walter, A. M., Rafalski, A., and Chumley, F. G. 1993. A genetic map of the rice blast fungus Magnaporthe grisea. Pages 3.112-3.117 in: Genetic Maps. 6th ed. S. J. O'Brien, ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
57. Swofford, D. L. 1991. PAUP: Phylogenetic analysis using parsimony. Version 3.0. Ill. Nat. Hist. Surv., Champaign, IL.
58. Valent, B. 1998. Developments in the rice blast research over the past five years: we enter the genomic era. Abstr. Int. Rice Blast Conf., 2nd.
59. Valent, B., and Chumley, F. G. 1994. Avirulence gene and mechanisms of genetic instability in the rice blast fungus. Pages 111-134 in: Rice Blast Disease. R. Zeigler, S. A. Leong, and P. S. Teng eds. CAB Int., Wallingford, UK.
60. Valent, B., Farrali, L., and Chumley, F. G. 1991. Magnaporthe grisea genes for pathogenicity and virulence identified through a series of backcrosses. Genetics 127:87-101.
61. van Kan, J. A. L., van den Ackerveken, G. F. J. M., and De Wit, P. J. G. M. 1991. Cloning and characterization of cDNA of avirulence gene avr9 of the fungal pathogen Cladosporium fulvum, causal agent of tomato leaf mold. Mol. Plant-Microbe Interact. 4:52-59.
62. Wang, Z., X., Yano, M., Yamanouchi, U., Iwamoto, M., Monna, L., Hayasaka, H., Katayose, Y., and Sasaki, T. 1999. The Pib gene for rice blast resistance belongs to the nucleotide binding and leucine-rich repeat class of plant disease resistance genes. Plant J. 19:55-64.
63. Whisson, S. C., Drenth, A., Maclean, D. J., and Irwin, J. A. G. 1995. Phytophthora sojae avirulence genes, RAPD and RFLP markers used to construct a detailed genetic linkage map. Mol. Plant-Microbe Interact. 8:988-995.
64. Williams, J. G. K., Hanafey, M. K., Livak, K., Rafalski, J., and Tingey, S. V. 1993. Genetic analysis using random amplified polymorphic markers. Methods Enzymol. 218:704-740.
65. Williams, J. G. K., Kubelik, A., Livak, K., Rafalski, J., and Tingey, S. V. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Res. 18:6531-6536.
66. Zeigler, R., Leong, S. A., and Teng, P. S. 1994. Rice Blast Disease. CAB Int., Wallingford, UK.