RAPD marker in grapevine (Vitis spp.) similar to plant retrotransposons

Plant Cell Reports

Volumn 17, Issue 5, 1998, Pages 415-421

  Bohm A ^a   Zyprian, E ^a  

^a Inst Grapevine Breed Geilweilerhof   (Germany)

Author keywords

DNA sequencing; RAPD PCR; Retrotransposon like sequence; Vitis vinifera L.

Indexed keywords

POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; TRANSPOSON;

VITIS VINIFERA;

EID: 0346362819     PISSN: 07217714     EISSN: None     Source Type: Journal    
DOI: 10.1007/s002990050417     Document Type: Article

References (34)

1. Altschul SF, Gish W, Miller W, Meyers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
2. Bourquin JC, Otten L, Walter B (1991) Identification of grapevine root-stocks by RFLP. CR Acad Sci Paris Se III 312:593-598
3. Bourquin JC, Sonko A, Otten L, Walter B (1993) Restriction fragment length polymorphism and molecular taxonomy in Vitis vinifera L. Theor Appl Genet 87:431-438
4. Büscher N, Zyprian E, Blaich R (1993) Identification of grapevine cultivars by DNA analyses: pitfalls of random amplified polymorphic DNA techniques using 10mer primers. Vitis 32:187-188
5. Büscher N, Zyprian E, Bachmann O, Blaich R (1994) On the origin of the grapevine variety Müller-Thurgau as investigated by the inheritance of random amplified polymorphic DNA (RAPD). Vitis 33:15-17
6. Camirand A, St.-Pierre B, Marineau C, Brisson N (1990) Occurrence of a copia-like transposable element in one of the introns of the potato starch phosphorylase gene. Mol Gen Genet 224:33-39
7. Casacuberta JM, Vernhettes S, Grandbastien MA (1995) Sequence variability within the tobacco retrotransposon Tnt1 population. EMBO J 14:2670-2678
8. Collins GC, Simons RH (1993) Polymorphisms in grapevine DNA detected by RAPD-PCR technique. Plant Mol Biol Rep 11: 102-112
9. Diolez A, Marches F, Fortini D, Brygoo Y (1995) Boty, a long-terminal-repeat retroelement in the phytopathogenic fungus Botrytis cinerea. Appl Environ Microbiol 61:103-108
10. Flavell AJ, Dunbar E, Anderson R, Pearce SR, Hartley R (1992) TY1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res 20:3639-3644
11. Grando MS, De Micheli L, Biaseto L, Scienza A (1995) RAPD markers in wild and cultivated Vitis vinifera. Vitis 34:37-39
12. Hirochika H, Fukuchi A, Kikuchi F (1992) Retrotransposon families in rice. Mol Gen Genet 233:209-216
13. Konieczny A, Voytas DF, Cummings PM, Ausubel FM (1991) A superfamily of Arabidopsis ihaliana retrotransposons. Genetics 127:801-809
14. Lewin B (1994) Genes V. Oxford University Press, Oxford
15. Lodhi MA, Daly MJ, Ye G-N, Weeden NF , Reisch BI (1995) A molecular marker based linkage map of Vitis. Genome 38:786-794
16. Lucas H, Feuerbach F, Kunert K, Grandbastien MA, Caboche M (1995) RNA-mediated transposition of the tobacco retrotransposon Tnt1 in Arabidopsis thaliana. EMBO J 14:2364-2373
17. Manninen I, Schulman AH (1993) BARE-1, a copia-like retroelement in barley (Hordeum vulgare). Plant Mol Biol 22:829-846
18. Mauro MC, Strefeler M, Weeden NF, Reisch J (1992) Genetic analysis of restriction fragment length polymorphism in Vitis. J Hered 83:18-21
19. Messing J (1983) New M13 vectors for cloning. Methods Enzymol 101:20
20. Mullins MG, Bouquet A, Williams LE (1992) Biology of the grapevine. Cambridge University Press, Cambridge
21. Newbury HJ, Ford-Lloyd BV (1993) The use of RAPD for assessing variation in plants. Plant Growth Reg 12:43-51
22. Quiros F, This P, Laudie M, Benet A, Chevre A-M, Delseny M (1995) Analysis of a set of RAPD markers by hybridization and sequencing in Brassica: a note of caution. Plant Cell Reports 14: 630-634
23. Regner F, Messner R (1993) Molekulare Differenzierung von Rebsorten mittels RAPD-Analyse. Mitt Klosterneuburg 43: 160-164
24. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning. A laboratory manual, 2nd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
25. Southern EM (1975) Detection of specific sequences among DNA fragments separated by gel electrophoresis. J Mol Biol 98: 503-507
26. Thomas MR, Matsumoto S, Cain P, Scott NS (1993) Repetitive DNA of grapevine: classes present and sequences suitable for cultivar identification. Theor Appl Genet 86:173-180
27. Tooley PW, Garfinkel DJ (1996) Presence of TY1-copia group retrotransposon sequences in the potato late blight pathogen Phytophthora infestans. Molecular Plant-Microbe Interactions 9:305-309
28. Tschammer J, Zyprian E (1994) Molecular characterization of grapevine cultivars of Riesling-type and closely related Burgundies. Vitis 33:249-250
29. Voytas DF, Asubel FM (1988) A copia-like transposable element family in Arabidopsis thaliana. Nature 336:242-244
30. Wei YD, Collinge DB, Smedegaard-Petersen V, Thordal-Christensen H (1996) Characterization of the transcript of a new class of retrotransposon-type repetitive element cloned from the powdery mildew fungus Erysiphe graminis. Mol Gen Genet 250:477-482
31. Welsh J, McClelland M (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Res 18:7213-7218
32. Williams JGK, Kubelik AR, Kenneth JL, Rafalski JA, Tingey SV (1990) DNA polymorphisms amplified by primers are useful as genetic markers. Nucleic Acids Res 18:6531-6535
33. Xu H, Wilson DJ, Arulsekar S, Bakalinsky AT (1995) Sequence-specific polymerase chain-reaction markers derived from randomly amplified polymorphic DNA markers for fingerprinting grape (Vitis) rootstocks. J Am Hort Sci 120:714-720
34. Yanisch-Perron C, Vieira J, Messing J (1985) Improved M-13 phage cloning vectors and host strains nucleotide sequence of the M-13MP-18 and PUC-19 vectors. Gene 33:103