Identification and linkage of the proteasome activator complex PA28 subunit genes in zebrafish

Scandinavian Journal of Immunology

Volumn 51, Issue 6, 2000, Pages 571-576

  Murray, B W ^a   Sultmann H ^a   Klein, Jan ^a  

^a MAX PLANCK INST FÜR BIOLOGIE   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

COMPLEMENTARY DNA; GAMMA INTERFERON; MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; PROTEASOME; PROTEIN SUBUNIT;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CHROMOSOME DUPLICATION; GENE MAPPING; GENETIC LINKAGE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DEGRADATION; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; CLONING, MOLECULAR; CYSTEINE ENDOPEPTIDASES; LINKAGE (GENETICS); MOLECULAR SEQUENCE DATA; MULTIENZYME COMPLEXES; MULTIGENE FAMILY; PROTEINS; SEQUENCE ALIGNMENT; ZEBRAFISH; ZEBRAFISH PROTEINS;

EID: 0034091479     PISSN: 03009475     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-3083.2000.00728.x     Document Type: Article

References (35)

1. 1 Tanaka K. Proteasomes: structure and biology. J Biochem 1998;123:195-204.
2. 2 Baumeister W, Walz J, Zühl F, Seemüller E. The proteasome: paradigm of a self-compartmentalizing protease. Cell 1998;92: 367-80.
3. 3 Groll M, Ditzel L, Löwe J et al. Structure of 20S proteasome from yeast at 2.4A Resolution. Nature 1997;386:463-71.
4. 4 Heinemeyer W, Fischer M, Krimmer T, Stachon U, Wolf D. The active sites of the eukaryotic 20S proteasome and their involvement in subunit precursor processing. J Biol Chem 1997;272: 25000-209.
5. 5 Hendil KB, Khan S, Tanaka K. Simultaneous binding of PA28 and PA700 activators to 20S proteasomes. Biochem J 1998;332: 749-54.
6. 6 Song X, Mott JD, von Kampen J et al. A model for the quaternary structure of the proteasome activator PA28. J Biol Chem 1996;42:26410-7.
7. 7 Tanahashi N, Yokota K, Ahn JY et al. Molecule properties of the proteasome activator PA28 family proteins and γ-interferon regulation. Genes Cell 1997;2:195-211.
8. 8 Soza A, Knuehl C, Groettrup M, Hevkliein P, Tanaka K, Kloetzel P-M. Expression and subcellular localization of mouse 20S proteasome activator complex PA28. FEBS Lett 1997;413:27-34.
9. 9 Dick TP, Ruppert T, Groettrup M et al. Coordinated dual cleavages induced by the proteasome regulator PA28 lead to dominant Mhc ligands. Cell 1996;86:253-62.
10. 10 Pamer E, Cresswell P. Mechanisms of Mhc class I-restricted antigen processing. Annu Rev Immunol 1998;16:323-58.
11. 11 Tanaka K, Kasahara M. The Mhc class I ligand-generating system: roles of immunoproteasomes and the interferon-γ-inducible proteasome activator PA28. Immunol Rev 1998;163:161-76.
12. 12 Driscoll J, Brown MG, Finley D, Monaco JJ. Mhc-linked LMP gene products specifically alter peptidase activities of the proteasome. Nature 1993;365:262-7.
13. 13 Rammensee H-G, Friede T, Stevanovic S. Mhc ligands and peptide motifs: first listing. Immunogenetics 1995;41:178-228.
14. 14 Realini C, Rogers S, Rechsteiner M. KEKE motifs: proposed roles in protein-protein association and presentation of peptides by Mhc class I receptors. FEBS Lett 1994;348:109-13.
15. 15 Niedermann G, Grimm R, Geier E et al. Potential immunocompetence of proteolytic fragments produced by proteasomes before evolution of the vertebrate immune system. J Exp Med 1997;186:209-20.
16. 16 McCusker D, Jones T, Sheer D, Trowsdale J. Genetic relationships of the genes encoding the human proteasome β subunits and the proteasome PA28 complex. Genomics 1997;45:362-7.
17. 17 McCusker D, Wilson M, Trowsdale J. Organization of the genes encoding the human proteasome activators PA28α and PA28β. Immunogenetics 1999;49:438-45.
18. 18 Kandil E, Kohda K, Ishibashi T, Tanaka K, Kasahara M. PA28 subunits of the mouse proteasome: primary structures and chromosomal localization of the genes. Immunogenetics 1997;46:337-44.
19. 19 Kohda K, Ishibashi T, Shimbara N, Tanaka K, Matsuda Y, Kasahara M. Characterization of the mouse PA28 activator complex gene family: complete organizations of the three member genes and a physical map of the 150-kb region containing the α-and β-subunit genes. J Immunol 1998;160:4923-35.
20. 20 Paesen GC, Nuttall PA. A tick homolog of the human Ki nuclear autoantigen. Biochim Biophys Acta 1996;1309:9-13.
21. 21 Kasahara M, Hayashi M, Tanaka K et al. Chromosomal localization of the proteasome Z subunit gene reveals an ancient chromosomal duplication involving the major histocompatibility complex. Proc Natl Acad Sci USA 1996;93:9096-101.
22. 22 Katsanis N, Fitzgibbon J, Fisher EMC. Paralogy mapping: identification of a region in the human Mhc triplicated onto human chromosomes 1 and 9 allows the prediction and isolation of novel PBX and NOTCH loci. Genomics 1996;35:101-8.
23. 23 Takami K, Zaleska-Rutczynska Z, Figueroa F, Klein J. Linkage of LMP, TAP, and RING3 with Mhc class I rather than class II genes in the zebrafish. J Immunol 1997;159:6052-60.
24. 24 Murray BW, Sültmann H, Klein J. Analysis of a 26-kilobase region linked to the Mhc in zebrafish: genomic organization of the proteasome component β/transporter associated with antigen processing-2 gene cluster and identification of five new proteasome β subunit genes. J Immunol 1999;163:2657-66.
25. 2-microglobulin gene in the zebrafish. Immunogenetics 1993;38: 1-10.
26. 26 Gilbert DG. SeqPup version 0.4j: a biosequence editor and analysis application. http://iubio.bio.indiana.edu/soft/molbio, 1995.
27. 27 Saitou N, Nei M. The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987;4:406-25.
28. 28 Felsenstein J. PHYLIP (Phylogeny Inference Package). (Version 3.5c). Seattle, Washington: University of Washington, 1993.
29. 29 Felsenstein J. Confidence limits on phytogenies: an approach using the bootstrap. Evolution 1985;39:783-91.
30. 30 Geisler R, Rauch GJ, Baier H et al. A radiation hybrid map of the zebrafish genome. Nat Genet 1999;23:86-9.
31. 31 Kwok C, Korn RM, Davis ME et al. Characterization of whole genome radiation hybrid mapping resources for non-mammalian vertebrates. Nucl Acids Res 1998;26:3562-6.
32. 32 Hukriede NA, Joly L, Tsang M et al. Radiation hybrid mapping of the zebrafish genome. Proc Natl Acad Sci USA 1999;96:9745-50.
33. 33 Klein J, Sato A, Mayer WE. Jaws and AIS. In: Kasahara M, eds. The Major Histocompatibility Complex: Evolution, Structure, and Function. Tokyo: Springer-Verlag, 2000; 3-26.
34. 34 Postlethwait JH, Yan Y-L, Gates MA et al. Vertebrate genome evolution and the zebrafish gene map. Nat Genet 1998;18:345-8.
35. 35 Realini C, Jensen CC, Zhang Z-G et al. Characterization of recombinant REGα, REGβ, and REGγ proteasome activators. J Biol Chem 1997;41:25483-92.