Trypanosoma brucei contains a 2,3-bisphosphoglycerate independent phosphoglycerate mutase

European Journal of Biochemistry

Volumn 267, Issue 5, 2000, Pages 1464-1472

  Chevalier, Nathalie ^a   Rigden, Daniel J ^b   Van Roy, Joris ^a   Opperdoes, Fred R ^a   Michels, Paul A M ^a,c  

^a DE DUVE INSTITUTE   (Belgium)

^b EMBRAPA CERRADOS   (Brazil)

^c ICP TROP 7439 ^*  (Belgium)

Author keywords

Alkaline phosphatase; Enzymology; Gene cloning; Phylogenetic analysis; Structure modelling

Indexed keywords

PHOSPHOGLYCERATE MUTASE; PROTOZOAL PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; ENZYME ANALYSIS; ESCHERICHIA COLI; GLYCOLYSIS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN SECONDARY STRUCTURE; SEQUENCE HOMOLOGY; TRYPANOSOMA BRUCEI;

2,3-DIPHOSPHOGLYCERATE; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CATALYTIC DOMAIN; CLONING, MOLECULAR; DNA PRIMERS; HUMANS; MOLECULAR SEQUENCE DATA; PHOSPHOGLYCERATE MUTASE; PHYLOGENY; PROTEIN CONFORMATION; RECOMBINANT PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID; TRYPANOSOMA BRUCEI BRUCEI;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; INVERTEBRATA; PROTISTA; TRYPANOSOMA; TRYPANOSOMA BRUCEI; VERTEBRATA;

EID: 0034054819     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.2000.01145.x     Document Type: Article

References (55)

1. 1. Fothergill-Gilmore, L.A. & Watson, H.C. (1989) The phosphoglycerate mutases. Adv. Enzymol. 62, 227-313.
2. 2. Fothergill-Gilmore, L.A. & Michels, P.A.M. (1993) Evolution of glycolysis. Prog. Biophys. Mol. Biol. 59, 105-235.
3. 3. Price, N.C., Stevens, E. & Rogers, P.M. (1983) Cofactor-dependence of phosphoglycerate mutase activity in a variety of fungi. FEMS Microbiol. Lett. 19, 257-259.
4. 4. Schäfer, T. & Schönheit, P. (1993) Gluconeogenesis from pyruvate in the hyperthermophilic archaeon Pyrococcus furiosus: involvement of reactions of the Embden-Meyerhof pathway. Arch. Microbiol. 159, 354-363.
5. 5. Yu, J.-P., Lapado, J. & Whitman, W.B. (1994) Pathway of glycogen metabolism in Methanococcus maripaludis. J. Bacteriol. 176, 325-332.
6. 6. Graña, X., Pérez de la Ossa, P., Broceño, C., Stöcker, M., Garriga, J., Puigdomènech, P. & Climent, F. (1995). 2,3-Bisphosphoglycerate-independant phosphoglycerate mutase is conserved among different phylogenic kingdoms. Comp. Biochem. Physiol. 112B, 287-293.
7. 7. Blattner, F.R., Plunkett, G., Bloch, C.A. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science 277, 1453-1474.
8. 8. Fraser, H.I., Kvaratskhelia, M. & White, M.F. (1999) The two analogous phosphoglycerate mutases of Escherichia coli. FEBS Lett. 455, 344-348.
9. 9. Kunst, F., Ogasawara, N., Moszer, I. et al. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtilis. Nature 390, 249-256.
10. 10. Price, N.C. & Stevens, E. (1983) Distinction between cofactor-dependent and -independent phosphoglycerate mutases by chromatography on Cibacron Blue-Sepharose. Bioscience Reports 3, 857-861.
11. 11. Watabe, K. & Freese, E. (1979) Purification and properties of the manganese-dependent phosphoglycerale mutase of Bacillus subtilis. J. Bacteriol. 137, 773-778.
12. 2 dependent and independent phosphoglycerate mutases in algae, fungi, plants and animals. Comp. Biochem. Physiol. 71B, 591-597.
13. 18O-labeled substrate, investigations of the phosphatase and phosphoryl transfer activities, and evidence for a phosphoryl-enzyme intermediate. Biochemistry 16, 3054-3060.
14. 14. Blättler, W.A. & Knowles, J.R. (1980) Phosphoglycerate mutases: stereochemical course of the phosphoryl group transfers catalyzed by the cofactor-dependent enzyme from rabbit muscle and the cofactor-independent enzyme from wheat germ. Biochemistry 19, 738-743.
15. 15. Rigden, D.J., Alexeev, D., Phillips, S.E.V. & Fothergill-Gilmore, L.A. (1998) The 2.3 Å X-ray crystal structure of S. cerevisiae phosphoglycerate mutase. J. Mol. Biol. 276, 449-459.
16. 16. Rigden, D.J., Walter, R.A., Phillips, S.E.V. & Fothergill-Gilmore, L.A. (1999) Sulphate ions observed in the 2.12 Å structure of a new crystal form of S. cerevisiae phosphoglycerate mutase provide insights into understanding the catalytic mechanism. J. Mol. Biol. 286, 1507-1517.
17. 17. Walter, R.A., Nairn, J., Duncan, D., Price, N.C., Kelly, S.M., Rigden, D.J. & Fothergill-Gilmore, L.A. (1999) The role of the C-terminal region in phosphoglycerate mutase. Biochem. J. 337, 89-95.
18. 18. Lively, M.O., El-Maghrabi, M.R., Pilkis, J., D'Angelo, G., Colosia, A.D., Ciavola, J.-A., Fraser, B.A. & Pilkis, S.J. (1988) Complete amino-acid sequence of rat-liver 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase. J. Biol. Chem. 263, 839-849.
19. 19. Schneider, G., Lindqvist, Y. & Vihko, P. (1993) Three-dimensional structure of rat acid phosphalase. EMBO J. 12, 2609-2615.
20. 20. Britton, H.G., Carreras, J. & Grisolia, S. (1971) Mechanism of action of 2,3-diphosphoglycerate-independent phosphoglycerate mutase. Biochemistry 10, 4522-4533.
21. 21. Gatehouse, J.A. & Knowles, J.R. (1977) Phosphoglycerate mutase from wheat germ: studies with isotopically labeled 3-phospho-D-glycerates showing that the catalyzed reaction is intramolecular. Biochemistry 16, 3045-3053.
22. 22. Huang, Y, Biakeley, S.D., McAleese, S.M., Fothergill-Gilmore, L.A. & Dennis, D.T. (1993) Higher-plant cofactor-independent phosphoglyceromutase: purification, molecular characterization and expression. Plant Mol. Biol. 23, 1039-1053.
23. 23. Graña, X., de Lecea, L., El-Maghrabi, M.R., Ureña, J.M., Caellas, C., Carreras, J., Puigdomènech, P., Pilkis, S.J. & Climent, F. (1992) Cloning and sequencing of a cDNA encoding 2,3-bisphos-phoglycerate-independent phosphoglycerate mutase from maize. J. Biol. Chem. 267, 12797-12803.
24. 24. Galperin, M.Y., Bairoch, A. & Koonin, E.V. (1998) A superfamily of metalloenzymes unifies phosphopentomutase and cofactor-independent phosphoglycerate mutase with alkaline phosphatases and sulfatases. Protein Sci. 7, 1829-1835.
25. 25. WHO Fourteenth Programme Report (1999) UNDP/World Bank/WHO Special Programme for Research and Training in Tropical Diseases (TDR). World Health Organization, Geneva, Switzerland.
26. 26. Opperdoes, F.R. & Borst, P. (1977) Localization of nine glycolytic enzymes in a microbody-like organelle in Trypanosoma brucei: the glycosome. FEBS Lett. 80, 360-364.
27. 27. Opperdoes, F.R. (1987) Compartmentation of carbohydrate metabolism in trypanosomes. Annu. Rev. Microbiol. 41, 127-151.
28. 28. Hannaert, V. & Michels, P.A.M. (1994) Structure, function and biogenesis of glycosomes in Kinetoplastida. J. Bioenerg. Biomemb. 26, 205-212.
29. 29. Opperdoes, F.R. (1985) Biochemical peculiarities of trypanosomes, African and South American. Br. Med. Bull. 41, 130-136.
30. 30. Michels, P.A.M. (1988) Compartmentation of glycolysis in trypanosomes: a potential target for new trypanocidal drugs. Biol. Cell 64, 157-164.
31. 31. Opperdoes, F.R., Aarsen, P.N., Van der Meer, C. & Borst, P. (1976) Trypanosoma brucei: an evaluation of salicylhydroxamic acid as a trypanocidal drug. Exp. Parasitol. 40, 198-206.
32. 32. Brun, R. & Schönenberger, M. (1979) Cultivation and in vitro cloning of procyclic forms of Trypanosoma brucei in a semi-defined medium. Acta Trop. 36, 289-292.
33. 33. Steiger, R.F., Opperdoes, F.R. & Bontemps, J. (1980) Subcellular fractionation of Trypanosoma brucei bloodstream forms with special reference to hydrolases. Eur. J. Biochem. 105, 163-175.
34. 34. Van der Ploeg, L.H.T., Bernards, A., Rijsewijk, F.A.M. & Borst, P. (1982) Characterization of the DNA duplication-transposition that controls the expression of two genes for variant surface glycoproteins in Trypanosoma brucei. Nucleic Acids Res. 10, 593-609.
35. 35. Michels, P.A.M., Marchand, M., Kohl, L., Allen, S., Wierenga, R.K. & Opperdoes, F.R. (1991) The cytosolic and glycosomal enzymes of glyceraldehyde-3-phosphate dehydrogenase in Trypanosoma brucei have a distant evolutionary relationship. Eur. J. Biochem. 198, 421-428.
36. 36. Studier, F.W., Rosenberg, A.H., Dunn, J.J. & Dubendorff, J.W. (1990) Use of T7 RNA polymerase to direct the expression of cloned genes. Methods Enzymol. 185, 60-89.
37. 37. Blackwell, J.R. & Horgan, R. (1991) A novel strategy for production of a highly expressed recombinant protein in an active form. FEBS Lett. 295, 10-12.
38. 38. Stein, S., Bohlen, P., Stone, J., Dairman, W. & Udenfriend, S. (1973) Amino-acid analysis with fluorescamine at the picomole level. Arch. Biochem. Biophys. 155, 203-212.
39. 39. Laemmli, U.K. (1970) Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227, 680-685.
40. 40. Fischer, D. & Eisenberg, D. (1996) Fold recognition using sequence-derived predictions. Protein Sci. 5, 947-955.
41. 41. Higgins, D.G., Thompson, J.D. & Gibson, T.J. (1996) Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266, 383-402.
42. 42. Rost, B. & Sander, C. (1993) Prediction of protein structure at better than 70% accuracy. J. Mol. Biol. 232, 585-599.
43. 43. Rost, B., Sander, C. & Schneider, R. (1994) PHD - an automatic mail server for protein secondary structure prediction. Comput. Appl. Biosci. 10, 53-60.
44. 44. Rost, B. & Sander, C. (1994) Combining evolutionary information and neural networks to predict protein secondary structure. Proteins 19, 55-72.
45. 45. Kabsch, W. & Sander, C. (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22, 2577-2637.
46. 46. Jones, T.A., Zou, J.-Y., Cowan, S.W. & Kjeldgaard, M. (1991) Improved methods for building models in electron density maps and the location of errors in those models. Acta Cryst. A47, 110-119.
47. 47. Barton, G.J. (1993) ALSCRIPT: a tool to format multiple sequence alignments. Protein Eng. 6, 37-40.
48. 48. Strimmer, K. & Von Haeseler, A. (1996) Quartet puzzling: a quartet maximum likelihood method for reconstructing tree topologies. Mol. Biol. Evol. 13, 964-969.
49. 49. Oduro, K.K., Flynn, I.W. & Bowman, I.B.R. (1980) Trypanosoma brucei: activities and subcellular distribution of glycolytic enzymes from differently disrupted cells. Exp. Parasitol. 50, 123-135.
50. 50. Johnson, C.M. & Price, N.C. (1988) Do metal ions promote the re-activation of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutases? Biochem. J. 252, 111-117.
51. 51. Kim, E.E. & Wyckoff, H.W. (1991) Reaction mechanism of alkaline phosphatase based on crystal structures. J. Mol. Biol. 218, 449-464.
52. 52. Huang, Y. & Dennis, D.T. (1995) Histidine residues 139, 363, and 500 are essential for catalytic activity of cofactor-independent phosphoglyceromutase from developing endosperm of the castor plant. Eur. J. Biochem. 229, 395-402.
53. 53. Kraulis, J. (1991) MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallog. 24, 946-950.
54. 54. Saitou, N. & Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 1406-1425.
55. 55. Jones, D.T., Taylor, W.R. & Thornton, J.M. (1992) The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8, 275-282.