Kinetics and mechanism of the citrate synthase from the thermophilic archaeon Thermoplasma acidophilum

Biochemistry

Volumn 39, Issue 9, 2000, Pages 2283-2296

  Kurz, Linda C ^a   Drysdale, George ^a   Riley, Marian ^a   Tomar, Maharaj Alejandro ^a   Chen, Judy ^a   Russell, Rupert J M ^b   Danson, Michael J ^b  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b University of Bath   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL COENZYME A; CARBONYL DERIVATIVE; CITRATE SYNTHASE; HEART ENZYME;

ARCHAEBACTERIUM; ARTICLE; CATALYSIS; CATALYST; CONFORMATIONAL TRANSITION; ENZYME ACTIVE SITE; ENZYME KINETICS; ENZYME MECHANISM; ENZYME STABILITY; NONHUMAN; PRIORITY JOURNAL; SWINE; THERMOPHILIC BACTERIUM; THERMOPLASMA ACIDOPHILUM;

ACETYL COENZYME A; ACYL COENZYME A; ANIMALS; CIRCULAR DICHROISM; CITRATE (SI)-SYNTHASE; CITRIC ACID; COENZYME A; ENZYME ACTIVATION; ENZYME INHIBITORS; HYDROGEN-ION CONCENTRATION; ISOELECTRIC POINT; KINETICS; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; OXALOACETATE; PROTONS; SOLVENTS; SUBSTRATE SPECIFICITY; SWINE; TEMPERATURE; THERMOPLASMA;

ARCHAEA; BACTERIA (MICROORGANISMS); SUS SCROFA; THERMOPLASMA ACIDOPHILUM;

EID: 0034054692     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991982r     Document Type: Article

References (72)

1. Wiegand, G., Remington, S., Deisenhofer, J., and Huber, R. (1984) J. Mol. Biol. 174, 205-19.
2. Lesk, A. M., and Chothia, C. (1984) J. Mol. Biol. 174, 175-91.
3. Liao, D. I., Karpusas, M., and Remington, S. J. (1991) Biochemistry 30, 6031-6.
4. Kollmann-Koch, A., and Eggerer, H. (1989) Eur. J. Biochem. 185, 441-7.
5. Kurz, L. C., Nakra, T., Stein, R., Plungkhen, W., Riley, M., Hsu, F., and Drysdale, G. R. (1998) Biochemistry 37, 9724-37.
6. Pettersson, G., Lill, U., and Eggerer, H. (1989) Eur. J. Biochem. 182, 119-24.
7. Jencks, W. P. (1980) Acc. Chem. Res. 13, 161-169.
8. Man, W. J., Li, Y., O'Connor, C. D., and Wilton, D. C. (1991) Biochem. J. 280, 521-6.
9. Gu, Z., Drueckhammer, D. G., Kurz, L., Liu, K., Martin, D. P., and McDermott, A. (1999) Biochemistry 38, 8022-8031.
10. Mulholland, A. J., and Richards, W. G. (1997) Proteins: Struct., Funct., Genet. 27, 9-25.
11. Quinn, D. M., and Sutton, L. D. (1991) Enzyme Mechanism from Isotope Effects, CRC Press, Boca Raton, FL.
12. Cleland, W. W., and Kreevoy, M. M. (1994) Science 264, 1887-90.
13. Russell, R. J., Gerike, U., Danson, M. J., Hough, D. W., and Taylor, G. L. (1998) Structure 6, 351-61.
14. Russell, R. J., Ferguson, J. M., Hough, D. W., Danson, M. J., and Taylor, G. L. (1997) Biochemistry 36, 9983-94.
15. Remington, S. J., and Usher, K. (1995) Protein Eng. 8, 55.
16. Johansson, C.-J., Mahlen, A., and Pettersson, G. (1973) Biochim. Biophys. Acta 309, 466-72.
17. Johansson, C. J., and Pettersson, G. (1974) Eur. J. Biochem. 46, 5-11.
18. Johansson, C.-J., and Pettersson, G. (1974) Eur. J. Biochem. 42, 383-8.
19. Johansson, C. J., and Pettersson, G. (1977) Biochim. Biophys. Acta. 484, 208-15.
20. Russell, R. J., Hough, D. W., Danson, M. J., and Taylor, G. L. (1994) Structure 2, 1157-67.
21. Remington, S., Wiegand, G., and Huber, R. (1982) J. Mol. Biol. 158, 111-152.
22. Burbaum, J. J., Raines, R. T., Albery, W. J., and Knowles, J. R. (1989) Biochemistry 28, 9293-305.
23. Sutherland, K. J., Danson, M. J., Hough, D. W., and Towner, P. (1991) FEBS Lett. 282, 132-4.
24. Kurz, L. C., Roble, J. H., Nakra, T., Drysdale, G. R., Buzan, J. M., Schwartz, B., and Drueckhammer, D. G. (1997) Biochemistry 36, 3981-90.
25. James, K. D., Russell, R. J. M., Parker, L., Daniel, R. M., Hough, D. W., and Danson, M. J. (1994) FEMS Microbiol. Lett. 119, 181-6.
26. Kurz, L. C., Shah, S., Crane, B. R., Donald, L. J., Duckworth, H. W., and Drysdale, G. R. (1992) Biochemistry 31, 7899-907.
27. Bayer, E., Bauer, B., and Eggerer, H. (1981) Eur. J. Biochem. 120, 155-60.
28. Kurz, L. C., Shah, S., Frieden, C., Nakra, T., Stein, R. E., Drysdale, G. R., Evans, C. T., and Srere, P. A. (1995) Biochemistry 34, 13278-88.
29. Martin, D. P., Bibart, R. T., and Drueckhammer, D. G. (1994) J. Am. Chem. Soc. 116, 4660.
30. Simon, E. J., and Shemin, D. (1953) J. Am. Chem. Soc. 75, 2520.
31. Kurz, L. C., and Drysdale, G. R. (1987) Biochemistry 26, 2623-7.
32. Riddles, P. W., Blakeley, R. L., and Zerner, B. (1979) Anal. Biochem. 94, 75-81.
33. Srere, P. A. (1969) Methods Enzymol. 13, 3-11.
34. Kosicki, G. W., and Srere, P. A. (1961) J. Biol. Chem. 236, 2560-2565.
35. Srere, P. A. (1966) J. Biol. Chem. 241, 2157-65.
36. Kosicki, G. W., and Srere, P. A. (1961) J. Biol. Chem. 236, 2566-70.
37. Kurz, L. C., Drysdale, G. R., Riley, M. C., Evans, C. T., and Srere, P. A. (1992) Biochemistry 31, 7908-14.
38. Myers, J. A., and Boyer, P. D. (1984) Biochemistry 23, 1264-69.
39. Zavodszky, P., Kardos, J., Svingor, and Petsko, G. A. (1998) Proc. Natl. Acad. Sci U.S.A. 95, 7406-11.
40. Belasco, J. G., and Knowles, J. R. (1980) Biochemistry 19, 472-7.
41. Deng, H., Zheng, J., Sloan, D., Burgner, J., and Callender, R. (1989) Biochemistry 28, 1525-33.
42. Deng, H., Zheng, J., Clarke, A., Holbrook, J. J., Callender, R., and Burgner, J. W. N. (1994) Biochemistry 33, 2297-305.
43. Kurz, L. C., Ackerman, J. J., and Drysdale, G. R. (1985) Biochemistry 24, 452-7.
44. Wolfenden, R. (1969) Nature 223, 704-5.
45. Wolfenden, R. (1974) Mol. Cell Biochem. 3, 207-11.
46. Welfenden, R. (1976) Annu. Rev. Biophys. Bioeng. 5, 271-306.
47. Usher, K. C., Remington, S. J., Martin, D. P., and Drueckhammer, D. G. (1994) Biochemists 33, 7753-9.
48. Candour, R. D. (1981) Bioorg. Chem. 10, 169-176.
49. Gerlt, J. A., and Gassman, P. G. (1993) Biochemistry 32, 11943-52.
50. Remington, S. J. (1992) Curr. Top. Cell Regul. 33, 209-29.
51. Wiegand, G., and Remington, S. J. (1986) Annu. Rev. Biophys. Biophys. Chem. 15, 97-117.
52. Karpusas, M., Branchaud, B., and Remington, S. J. (1990) Biochemistry 29, 2213-9.
53. Evans, C. T., Kurz, L. C., Remington, S. J., and Srere, P. A. (1996) Biochemistry 35, 10661-72.
54. Remington, S. J. (1992) Curr. Opin. Struct. Biol. 2, 730-5.
55. Monod, J., Wyman, J., and Changeux, J.-P. (1965) J. Mol. Biol. 12, 88-118.
56. Koshland, D. E., Jr., Nemethy, G., and Filmer, D. (1966) Biochemistry 5, 365-85.
57. Cornforth, J. W., Redmond, J. W., Eggerer, H., Buckel, W., and Gutschow, C. (1969) Nature 221, 1212-3.
58. Lenz, H., Buckel, W., Wunderwald, P., Biedermann, G., Buschmeier, V., Eggerer, H., Cornforth, J. W., Redmond, J. W., and Mallaby, R. (1971) Eur. J. Biochem. 24, 207-15.
59. Gerlt, J. A., and Gassman, P. G. (1993) J. Am. Chem. Soc. 115, 11552-68.
60. Lill, U., Lefrank, S., Henschen, A., and Eggerer, H. (1992) Eur. J. Biochem. 208, 459-66.
61. Kunkel, T. A., Roberts, J. D., and Zakour, R. A. (1987) Methods Enzymol. 154, 367-82.
62. Candour, R. D., and Schowen, R. L. (1978) Transition States of Biochemical Processes, Plenum Press, New York.
63. Wilde, J., Lill, U., and Eggerer, H. (1990) Biol. Chem. Hoppe-Seyler 371, 707-13.
64. Albery, W. J., and Knowles, J. R. (1977) Angew. Chem. Int. Ed. Engl. 16, 285-93.
65. Sturtevant, J. M. (1977) Proc. Natl. Acad. Sci. U.S.A. 74, 2236-40.
66. Spolar, R. S., and Record, M. T., Jr. (1994) Science 263, 777-84.
67. Takahashi, K., Casey, J. L., and Sturtevant, J. M. (1981) Biochemistry 20, 4693-7.
68. Kurz, J. L., and Kurz, L. C. (1985) Isr. J. Chem. 26, 339-348.
69. Kohen, A., Cannio, R., Bartolucci, S., and Klinman, J. P. (1999) Nature 399, 496-9.
70. Johnson, J. K., and Srivastava, D. K. (1991) Arch. Biochem. Biophys. 287, 250-6.
71. Weidman, S. W., Drysdale, G. R., and Mildvan, A. S. (1973) Biochemistry 12, 1874-83.
72. Northrop, D. B. (1991) in Enzyme Mechanism from Isotope Effects (Cook, P. F., Ed.) pp 181-202, CRC Press, Boston.