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Volumn 7, Issue 3, 2000, Pages 153-161

Sequence specific alkylation of DNA by hairpin pyrrole-imidazole polyamide conjugates

Author keywords

Alkylation; DNA; Minor groove; Molecular recognition

Indexed keywords

BINDING SITE; CHEMICAL MODIFICATION; COVALENT BOND; DNA ALKYLATION; DNA BINDING; GENE EXPRESSION REGULATION; HUMAN IMMUNODEFICIENCY VIRUS 1; LIGAND; PROMOTER REGION; PROTEIN DNA INTERACTION; PYRROLE IMIDAZOLE POLYAMIDE;

EID: 0034013858     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1074-5521(00)00085-5     Document Type: Article
Times cited : (77)

References (31)
  • 1
    • 0029786013 scopus 로고    scopus 로고
    • Recognition of DNA by designed ligands at subnanomolar concentrations
    • Trauger J.W., Baird E.E., Dervan P.B. Recognition of DNA by designed ligands at subnanomolar concentrations. Nature. 382:1996;559-561.
    • (1996) Nature , vol.382 , pp. 559-561
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 2
    • 0030745572 scopus 로고    scopus 로고
    • Discrimination of 5′-GGGG-3′,5′-GCGC-3′, and 5′-GGCC-3′ sequences in the minor groove of DNA by eight-ring hairpin polyamides
    • Swalley S.E., Baird E.E., Dervan P.B. Discrimination of 5′-GGGG-3′,5′-GCGC-3′, and 5′-GGCC-3′ sequences in the minor groove of DNA by eight-ring hairpin polyamides. J. Am. Chem. Soc. 119:1997;6953-6961.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 6953-6961
    • Swalley, S.E.1    Baird, E.E.2    Dervan, P.B.3
  • 3
    • 0030953342 scopus 로고    scopus 로고
    • Recognition of seven base pair sequences in the minor groove of DNA by ten-ring pyrrole-imidazole polyamide hairpins
    • Turner J.M., Baird E.E., Dervan P.B. Recognition of seven base pair sequences in the minor groove of DNA by ten-ring pyrrole-imidazole polyamide hairpins. J. Am. Chem. Soc. 119:1997;7636-7644.
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 7636-7644
    • Turner, J.M.1    Baird, E.E.2    Dervan, P.B.3
  • 4
    • 0032486215 scopus 로고    scopus 로고
    • Cooperative hairpin dimers for recognition of DNA by pyrrole-imidazole polyamides
    • Trauger J.W., Baird E.E., Dervan P.B. Cooperative hairpin dimers for recognition of DNA by pyrrole-imidazole polyamides. Angew. Chem. Int. Ed. 37:1998;1421-1423.
    • (1998) Angew. Chem. Int. Ed. , vol.37 , pp. 1421-1423
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 5
    • 0344641913 scopus 로고    scopus 로고
    • Sequence-specific DNA recognition by polyamides
    • Dervan P.B., Burli R.W. Sequence-specific DNA recognition by polyamides. Curr. Opin. Chem. Biol. 3:1999;688-693.
    • (1999) Curr. Opin. Chem. Biol. , vol.3 , pp. 688-693
    • Dervan, P.B.1    Burli, R.W.2
  • 6
    • 0342987251 scopus 로고
    • Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif
    • Wade W.S., Mrksich M., Dervan P.B. Design of peptides that bind in the minor groove of DNA at 5′-(A,T)G(A,T)C(A,T)-3′ sequences by a dimeric side-by-side motif. J. Am. Chem. Soc. 114:1992;8783-8794.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8783-8794
    • Wade, W.S.1    Mrksich, M.2    Dervan, P.B.3
  • 7
    • 0026661689 scopus 로고
    • Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin
    • Mrksich M., Wade W.S., Dwyer T.J., Geierstanger B.H., Wemmer D.E., Dervan P.B. Antiparallel side-by-side dimeric motif for sequence-specific recognition in the minor groove of DNA by the designed peptide 1-methylimidazole-2-carboxamide netropsin. Proc. Natl Acad. Sci. USA. 89:1992;7586-7590.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 7586-7590
    • Mrksich, M.1    Wade, W.S.2    Dwyer, T.J.3    Geierstanger, B.H.4    Wemmer, D.E.5    Dervan, P.B.6
  • 8
    • 0031215078 scopus 로고    scopus 로고
    • On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides
    • White S., Baird E.E., Dervan P.B. On the pairing rules for recognition in the minor groove of DNA by pyrrole-imidazole polyamides. Chem. Biol. 4:1997;569-578.
    • (1997) Chem. Biol. , vol.4 , pp. 569-578
    • White, S.1    Baird, E.E.2    Dervan, P.B.3
  • 10
    • 0032475994 scopus 로고    scopus 로고
    • A structural basis for recognition of A·T and T·A base pairs in the minor groove of B-DNA
    • Kielkopf C.L., Rees D.C.et al. A structural basis for recognition of A·T and T·A base pairs in the minor groove of B-DNA. Science. 282:1998;111-115.
    • (1998) Science , vol.282 , pp. 111-115
    • Kielkopf, C.L.1    Rees, D.C.2
  • 11
    • 0032576722 scopus 로고    scopus 로고
    • Recognition of the four Watson-Crick, base pairs in the DNA minor groove by synthetic ligands
    • White S., Szewczyk J.W., Turner J.M., Baird E.E., Dervan P.B. Recognition of the four Watson-Crick, base pairs in the DNA minor groove by synthetic ligands. Nature. 391:1998;468-471.
    • (1998) Nature , vol.391 , pp. 468-471
    • White, S.1    Szewczyk, J.W.2    Turner, J.M.3    Baird, E.E.4    Dervan, P.B.5
  • 12
    • 0030567759 scopus 로고    scopus 로고
    • Extension of sequence-specific recognition in the minor groove of DNA by pyrrole-imidazole polyamides to 9-13 base pairs
    • Trauger J.W., Baird E.E., Mrksich M., Dervan P.B. Extension of sequence-specific recognition in the minor groove of DNA by pyrrole-imidazole polyamides to 9-13 base pairs. J. Am. Chem. Soc. 118:1996;6160-6166.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6160-6166
    • Trauger, J.W.1    Baird, E.E.2    Mrksich, M.3    Dervan, P.B.4
  • 13
    • 0030847647 scopus 로고    scopus 로고
    • A pyrrole-imidazole polyamide motif for recognition of eleven base pair sequences in the minor groove of DNA
    • Swalley S.E., Baird E.E., Dervan P.B. A pyrrole-imidazole polyamide motif for recognition of eleven base pair sequences in the minor groove of DNA. Chem. Eur. J. 3:1997;1600-1607.
    • (1997) Chem. Eur. J. , vol.3 , pp. 1600-1607
    • Swalley, S.E.1    Baird, E.E.2    Dervan, P.B.3
  • 14
    • 0000739713 scopus 로고    scopus 로고
    • Recognition of 16 base pairs in the minor groove of DNA by a pyrrole-imidazole polyamide dimmer
    • Trauger J.W., Baird E.E., Dervan P.B. Recognition of 16 base pairs in the minor groove of DNA by a pyrrole-imidazole polyamide dimmer. J. Am. Chem. Soc. 120:1998;3534-3535.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 3534-3535
    • Trauger, J.W.1    Baird, E.E.2    Dervan, P.B.3
  • 16
    • 0032573224 scopus 로고    scopus 로고
    • Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands
    • Dickinson L.A., Dervan P.B.et al. Inhibition of RNA polymerase II transcription in human cells by synthetic DNA-binding ligands. Proc. Natl Acad. Sci. USA. 95:1998;12890-12895.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 12890-12895
    • Dickinson, L.A.1    Dervan, P.B.2
  • 17
    • 0022616154 scopus 로고
    • DNA-sequence selectivity of guanine-N7 alkylation by nitrogen mustards
    • Mattes W.B., Hartley J.A., Kohn K.W. DNA-sequence selectivity of guanine-N7 alkylation by nitrogen mustards. Nucleic Acids Res. 14:1986;2971-2987.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 2971-2987
    • Mattes, W.B.1    Hartley, J.A.2    Kohn, K.W.3
  • 18
    • 0024523215 scopus 로고
    • Synthesis, DNA-binding properties and antitumor activity of novel distamycin derivatives
    • Arcamone F.M., Mongelli M.et al. Synthesis, DNA-binding properties and antitumor activity of novel distamycin derivatives. J. Med. Chem. 32:1989;774-788.
    • (1989) J. Med. Chem. , vol.32 , pp. 774-788
    • Arcamone, F.M.1    Mongelli, M.2
  • 20
    • 0032564881 scopus 로고    scopus 로고
    • Stereochemical control of the DNA binding affinity, sequence specificity, and orientation preference of chiral hairpin polyamides in the minor groove
    • Herman D.M., Baird E.E., Dervan P.B. Stereochemical control of the DNA binding affinity, sequence specificity, and orientation preference of chiral hairpin polyamides in the minor groove. J. Am. Chem. Soc. 120:1998;1382-1391.
    • (1998) J. Am. Chem. Soc. , vol.120 , pp. 1382-1391
    • Herman, D.M.1    Baird, E.E.2    Dervan, P.B.3
  • 21
    • 0030059085 scopus 로고    scopus 로고
    • Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids
    • Baird E.E., Dervan P.B. Solid phase synthesis of polyamides containing imidazole and pyrrole amino acids. J. Am. Chem. Soc. 118:1996;6141-6146.
    • (1996) J. Am. Chem. Soc. , vol.118 , pp. 6141-6146
    • Baird, E.E.1    Dervan, P.B.2
  • 22
    • 0022358966 scopus 로고
    • Reaction of the antitumor antibiotic CC-1065 with DNA - Location of the site of thermally induced strand breakage and analysis of DNA-sequence specificity
    • Reynolds V.L., Molineux I.J., Kaplan D.J., Swenson D.H., Hurley L.H. Reaction of the antitumor antibiotic CC-1065 with DNA - location of the site of thermally induced strand breakage and analysis of DNA-sequence specificity. Biochemistry. 24:1985;6228-6237.
    • (1985) Biochemistry , vol.24 , pp. 6228-6237
    • Reynolds, V.L.1    Molineux, I.J.2    Kaplan, D.J.3    Swenson, D.H.4    Hurley, L.H.5
  • 23
    • 0028865427 scopus 로고
    • Sequence specificity of alkylation for a series of nitrogen mustard-containing analogs of distamycin of Increasing, binding-site size - Evidence for increased cytotoxicity with enhanced sequence specificity
    • Wyatt M.D., Lee M., Garbiras B.J., Souhami R.L., Hartley J.A. Sequence specificity of alkylation for a series of nitrogen mustard-containing analogs of distamycin of Increasing, binding-site size - evidence for increased cytotoxicity with enhanced sequence specificity. Biochemistry. 34:1995;13034-13041.
    • (1995) Biochemistry , vol.34 , pp. 13034-13041
    • Wyatt, M.D.1    Lee, M.2    Garbiras, B.J.3    Souhami, R.L.4    Hartley, J.A.5
  • 24
    • 0030819908 scopus 로고    scopus 로고
    • Structure-activity relationship of a series of C-terminus modified aminoalkyl, diaminoalkyl- And anilino-containing analogues of the benzoic acid mustard distamycin derivative tallimustine: Synthesis, DNA binding and cytotoxicity studies
    • Brooks N., Lee M.et al. Structure-activity relationship of a series of C-terminus modified aminoalkyl, diaminoalkyl- and anilino-containing analogues of the benzoic acid mustard distamycin derivative tallimustine: synthesis, DNA binding and cytotoxicity studies. Bioorg. Med. Chem. 5:1997;1497-1507.
    • (1997) Bioorg. Med. Chem. , vol.5 , pp. 1497-1507
    • Brooks, N.1    Lee, M.2
  • 26
    • 0033516311 scopus 로고    scopus 로고
    • Rational design of sequence-specific DNA alkylating agents based on duocarmycin A and pyrrole-imidazole hairpin polyamides
    • Zhi-Fu T., Fujiwara T., Saito I., Sugiyama H. Rational design of sequence-specific DNA alkylating agents based on duocarmycin A and pyrrole-imidazole hairpin polyamides. J. Am. Chem. Soc. 121:1999;4961-4967.
    • (1999) J. Am. Chem. Soc. , vol.121 , pp. 4961-4967
    • Zhi-Fu, T.1    Fujiwara, T.2    Saito, I.3    Sugiyama, H.4
  • 27
    • 0028290825 scopus 로고
    • Control of RNA initiation and elongation at the HIV-1 promoter
    • Jones K.A., Peterlin B.M. Control of RNA initiation and elongation at the HIV-1 promoter. Annu. Rev. Biochem. 63:1994;717-743.
    • (1994) Annu. Rev. Biochem. , vol.63 , pp. 717-743
    • Jones, K.A.1    Peterlin, B.M.2
  • 28
    • 0342621884 scopus 로고
    • Sequencing DNA by labeling the end and breaking at bases - DNA segments, end labels, cleavage reactions, polyacrylamide gels and strategies
    • Maxam A.M., Gilbert W. Sequencing DNA by labeling the end and breaking at bases - DNA segments, end labels, cleavage reactions, polyacrylamide gels and strategies. Mol. Biol. 20:1986;461-509.
    • (1986) Mol. Biol. , vol.20 , pp. 461-509
    • Maxam, A.M.1    Gilbert, W.2
  • 29
    • 0023652067 scopus 로고
    • Adenine-specific DNA chemical sequencing reaction
    • Iverson B.L., Dervan P.B. Adenine-specific DNA chemical sequencing reaction. Nucleic Acids Res. 15:1987;7823-7830.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 7823-7830
    • Iverson, B.L.1    Dervan, P.B.2
  • 31


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