Recognition and binding of the human selenocysteine insertion sequence by nucleolin

Journal of Cellular Biochemistry

Volumn 77, Issue 3, 2000, Pages 507-516

  Wu, Rui ^a   Shen, Qichang ^a   Newburger, Peter E ^a  

^a UNIVERSITY OF MASSACHUSETTS MEDICAL SCHOOL   (United States)

Author keywords

DNA binding protein B; Glutathione peroxidase; RNA binding protein; Selenium; Selenoprotein; Translation

Indexed keywords

DNA BINDING PROTEIN; GLUTATHIONE PEROXIDASE; NUCLEOLIN; RNA BINDING PROTEIN; SELENOCYSTEINE; SELENOPROTEIN;

AMINO ACID ANALYSIS; ANIMAL CELL; ARTICLE; CELL STRAIN COS1; COMPLEX FORMATION; CONTROLLED STUDY; EUKARYOTE; HELA CELL; HUMAN; HUMAN CELL; MOLECULAR CLONING; NONHUMAN; PRIORITY JOURNAL; PROTEIN PROTEIN INTERACTION; RNA TRANSLATION; STOP CODON;

AMINO ACID SEQUENCE; ANIMALS; BLOTTING, WESTERN; CCAAT-ENHANCER-BINDING PROTEINS; CENTRIFUGATION, DENSITY GRADIENT; COS CELLS; DNA TRANSPOSABLE ELEMENTS; DNA-BINDING PROTEINS; GENE LIBRARY; HELA CELLS; HUMANS; MOLECULAR SEQUENCE DATA; NFI TRANSCRIPTION FACTORS; PHOSPHOPROTEINS; PROTEIN BINDING; RNA; RNA-BINDING PROTEINS; SELENOCYSTEINE; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS; Y-BOX-BINDING PROTEIN 1;

ANIMALIA; EUKARYOTA; PROKARYOTA;

EID: 0034013540     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-4644(20000601)77:3<507::AID-JCB15>3.0.CO;2-P     Document Type: Article

References (63)

1. Baron C, Heider J, Böck A. 1993. Interaction of translation factor SELB with the formate dehydrogenase H selenopeptide mRNA. Proc Natl Acad Sci USA 90:4181-4185.
2. pol, and authentic RNA replication in HeLa S10 extracts. Meth Enzymol 275:35-57.
3. Bermano G, Arthur JR, Hesketh JE. 1996. Role of the 3′ untranslated region in the regulation of cytosolic glutathione peroxidase and phosphlipid-hydroperoxide glutathione peroxidase gene expression by selenium supply. Biochem J 320:891-895.
4. Berry MJ, Banu L, Chen YY, Mandel SJ, Kieffer JD, Harney JW, Larsen PR. 1991a. Recognition of UGA as a selenocysteine codon in type I deiodinase requires sequences in the 3′ untranslated region. Nature 353:273-276.
5. Berry MJ, Banu L, Larsen PR. 1991b. Type I iodothyronine deiodinase is a selenocysteine-containing enzyme. Nature 349:438-440.
6. Berry MJ, Banu L, Harney JW, Larsen PR. 1993. Functional characterization of the eukaryotic SECIS elements which direct selenocysteine insertion at UGA codons. EMBO J 12:3315-3322.
7. Böck A, Forchhammer K, Heider J, Baron C. 1991. Selenoprotein synthesis: an expansion of the genetic code. Trends Biochem Sci 16:463-467.
8. Borer RA, Lehner CF, Eppenberger HM, Nigg EA. 1989. Major nucleolar proteins shuttle between nucleus and cytoplasm. Cell 56:379-390.
9. Bouvet P, Diaz JJ, Kindbeiter K, Madjar JJ, Amalric F. 1998. Nucleolin interacts with several ribosomal proteins through its RGG domain. J Biol Chem 273:19025-19029.
10. Buettner C, Harney JW, Larsen PR. 1998. The 3′-untranslated region of human type 2 iodothyronine deiodinase mRNA contains a functional selenocysteine insertion sequence element. J Biol Chem 273:33374-33378.
11. Burd CG, Dreyfuss G. 1994. Conserved structures and diversity of functions of RNA-binding proteins. Science 265:615-621.
12. Burk RF, Hill KE. 1993. Regulation of selenoproteins. Annu Rev Nutr 13:65-81.
13. Chambers I, Frampton J, Goldfarb P, Affara N, McBain W, Harrison PR. 1986. The structure of the mouse glutathione peroxidase gene: the selenocysteine in the active site is encoded by the termination codon, TGA. EMBO J 5:1221-1227.
14. Chu F-F, Doroshow JH, Esworthy RS. 1993. Expression, characterization, and tissue distribution of a new cellular selenium-dependent glutathione peroxidase, GSHPxGI. J Biol Chem 268:2571-2576.
15. Copeland PR, Driscoll DM. 1999. Purification, redox sensitivity, and RNA binding properties of SECIS-binding protein 2, a protein involved in selenoprotein biosynthesis. J Biol Chem 274:25447-25454.
16. [Ser]Sec. J Biol Chem 268:14215-14223.
17. Didier DK, Schiffenbauer J, Woulfe SL, Zacheis M, Schwartz BD. 1988. Characterization of the cDNA encoding a protein binding to the major histocompatibility complex class II Y box. Proc Natl Acad Sci USA 85:7322-7326.
18. Esworthy RS, Chu F-F, Paxton RJ, Akman S, Doroshow JH. 1991. Characterization and partial amino acid sequence of human plasma glutathione peroxidase. Arch Biochem Biophys 286:330-336.
19. Forchhammer K, Leinfelder W, Böck A. 1989. Identification of a novel translation factor necessary for the incorporation of selenocysteine into protein. Nature 342:453-456.
20. Fujiwara T, Busch K, Gross HJ, Mizutani T. 1999. A SECIS binding protein (SBP) is distinct from selenocysteyltRNA protecting factor (SePF). Biochimie 81:213-218.
21. Gelpi C, Sontheimer EJ, Rodriguez-Sanchez JL. 1992. Autoantibodies against a serine tRNA-protein complex implicated in cotranslational selenocysteine insertion. Proc Natl Acad Sci USA 89:9739-9743.
22. Ginisty H, Sicard H, Roger B, Bouvet P. 1999. Structure and functions of nucleolin. J Cell Sci 112:761-772.
23. Gladyshev VN, Jeang KT, Stadtman TC. 1996. Selenocysteine, identified as the penultimate C-terminal residue in human T-cell thioredoxin reductase, corresponds to TGA in the human placental gene. Proc Natl Acad Sci USA 93:6146-6151.
24. Grundner-Culemann E, Martin GW III, Harney JW, Berry MJ. 1999. Two distinct SECIS structures capable of directing selenocysteine incorporation in eukaryotes. RNA 5:625-635.
25. Hanakahi LA, Dempsey LA, Li MJ, Maizels N. 1997. Nucleolin is one component of the B cell-specific transcription factor and switch region binding protein, LR1. Proc Natl Acad Sci USA 94:3605-3610.
26. Harlow E, Lane D. 1988. Antibodies. A laboratory manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory, p 511-552.
27. Hilgenfeld R, Böck A, Wilting R. 1996. Structural model for the selenocysteine-specific elongation factor SelB. Biochimie 78:971-978.
28. Hill KE, Burk RF. 1997. Selenoprotein P: recent studies in rats and in humans. Biomed Environ Sci 10:198-208.
29. Horwitz EM, Maloney KA, Ley TJ. 1994. A human protein containing a "cold shock" domain binds specifically to H-DNA upstream from the human gamma-globin genes. J Biol Chem 269:14130-14139.
30. Hu ML, Tappel AL. 1987. Selenium as a sulfhydryl redox catalyst and survey of potential selenium-dependent enzymes. J Inorg Biochem 30:239-248.
31. Hubert N, Walczak R, Carbon P, Krol A. 1996. A protein binds the selenocysteine insertion element in the 3′-UTR of mammalian selenoprotein mRNAs. Nucleic Acids Res 24:464-469.
32. Huttenhofer, A, Böck A. 1998. Selenocysteine inserting RNA elements modulate GTP hydrolysis of elongation factor SelB. Biochemistry 37:885-890.
33. Kromayer M, Wilting R, Tormay P, Bök A. 1996. Domain structure of the prokaryotic selenocysteine-specific elongation factor SelB. J Mol Biol 262:413-420.
34. Larsen PR, Berry MJ. 1995. Nutritional and hormonal regulation of thyroid hormone deiodinases. Annu Rev Nutr 15:323-352.
35. Ser in mammalian cells that recognizes the nonsense codon, UGA. J Biol Chem 264:9724-9727.
36. Lee CH, Leeds P, Ross J. 1998. Purification and characterization of a polysome-associated endoribonuclease that] degrades c-myc mRNA in vitro. J Biol Chem 273:25261-25271.
37. Leonard JL, Leonard DM, Shen Q, Farwell AP, Newburger PE. 1996. Selenium-regulated translation control of heterologous gene expression: normal function of selenocysteine-substituted gene products. J Cell Biochem 61:410-419.
38. Lesoon A, Mehta A, Singh R, Chisolm GM, Driscoll DM. 1997. An RNA-binding protein recognizes a mammalian selenocysteine insertion sequence element required for cotranslational incorporation of selenocysteine. Mol Cell Biol 17:1977-1985.
39. Martin GW, Harney JW, Berry MJ. 1996. Selenocysteine incorporation in eukaryotes: insights into mechanism and efficiency from sequence, structure, and spacing proximity studies of the type 1 deiodinase SECIS element. RNA 2:171-182.
40. Nisole S, Krust B, Callebaut C, Guichard G, Muller S, Briand JP, Hovanessian AG. 1999. The anti-HIV pseudopeptide HB-19 forms a complex with the cell-surface-expressed nucleolin independent of heparan sulfate proteoglycans. J Biol Chem 274:27875-27884.
41. Qiu JM, Brown KE. 1999. A 110-kDa nuclear shuttle protein, nucleolin, specifically binds to adeno-associated virus type 2 (AAV-2) capsid. Virology 257:373-382.
42. Sakura H, Maekawa T, Imamoto F, Yasuda K, Ishii S. 1988. Two human genes isolated by a novel method encode DNA-binding proteins containing a common region of homology. Gene 73:499-507.
43. Schuckelt R, Brigelius-Flohé R, Maiorino M, Roveri A, Reumkens J, Strassburger W, Ursini F, Wolf B, Flohé L. 1991. Phospholipid hydroperoxide glutathione peroxidase is a seleno-enzyme distinct from the classical glutathione peroxidase as evident from cDNA and amino acid sequencing. Free Radic Res Commun 14:343-361.
44. Shen Q, Chu F-F, Newburger PE. 1993. Sequences in the 3′ untranslated region of the human cellular glutathione peroxidase gene are necessary and sufficient for selenocysteine incorporation at the UGA codon. J Biol Chem 268:11463-11469.
45. Shen Q, Leonard JL, Newburger PE. 1995a. Structure and function of the selenium translation element in the 3′untranslated region of human cellular glutathione peroxidase mRNA. RNA 1:519-525.
46. Shen Q, McQuilkin PA, Newburger PE. 1995b. RNA-binding proteins that specifically recognize the selenocysteine insertion sequence of human cellular glutathione peroxidase mRNA. J Biol Chem 270:30448-30452.
47. Shen Q, Wu R, Leonard JL, Newburger PE. 1998. Identification and molecular cloning of a human selenocysteine insertion sequence-binding protein. A bifunctional role for DNA-binding protein B. J Biol Chem 273:5443-5446.
48. Shibutani M, Kim E, Lazarovici P, Oshima M, Guroff G. 1996. Preparation of a cell-free translation system from PC 12 cell. Neurochem Res 21:801-807.
49. Stadtman TC. 1990. Selenium biochemistry. Annu Rev Biochem 59:111-127.
50. Stadtman TC. 1996. Selenocysteine. Annu Rev Biochem 65:83-100.
51. Studier FW, Rosenberg AH, Dunn JJ, Dubendorff JW. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol 185:60-89.
52. Sunde RA. 1990. Molecular biology of selenoproteins. Annu Rev Nutr 10:451-474.
53. Tormay P, Sawers A, Böck A. 1996. Role of stoichiometry between mRNA, translation factor SelB and selenocysteyl-tRNA in selenoprotein synthesis. Mol Microbiol 21:1253-1259.
54. Tuteja R, Tuteja N. 1998. Nucleolin: a multifunctional major nucleolar phosphoprotein. Crit Rev Biochem Mol Biol 33:407-436.
55. Tuteja N, Huang NW, Skopac D, Tuteja R, Hrvatic S, Zhang J, Pongor S, Joseph G, Faucher C, Amalric F. 1995. Human DNA helicase IV is nucleolin, an RNA helicase modulated by phosphorylation. Gene 160:143-148.
56. Vendeland SC, Beilstein MA, Yeh JY, Ream W, Whanger PD. 1995. Rat skeletal muscle selenoprotein W: cDNA clone and mRNA modulation by dietary selenium. Proc Natl Acad Sci USA 92:8749-8753.
57. von der Kammer H, Klaudiny J, Zimmer M, Scheit KH. 1991. Human elongation factor 1 beta: cDNA and derived amino acid sequence. Biochem Biophys Res Commun 177:312-317.
58. Waggoner S, Sarnow P. 1998. Viral ribonucleoprotein complex formation and nucleolar-cytoplasmic relocalization of nucleolin in poliovirus-infected cells. J Virol 72:6699-6709.
59. Walczak R, Westhof E, Carbon P, Krol A. 1996. A novel RNA structural motif in the selenocysteine insertion sequence of eukaryotic selenoprotein mRNAs. RNA 2:367-379.
60. Wilting R, Schorling S, Persson BC, Böck A. 1997. Selenoprotein synthesis in archaea: identification of an mRNA element of Methanococcus jannaschii probably directing selenocysteine insertion. J Mol Biol 266:637-641.
61. Wilting R, Vamvakidou K, Böck A. 1998. Functional expression in Escherichia coli of the Haemophilus influenzae gene coding for selenocysteine-containing selenophosphate synthetase. Arch Microbiol 169:71-75.
62. 75Se] SeCys-tRNA is different from EF-1α. FEBS Lett 347:137-142.
63. Zinoni F, Heider J, Böck A. 1990. Features of the formate dehydrogenase mRNA necessary for decoding of the UGA codon as selenocysteine. Proc Natl Acad Sci USA 87:4660-4664.