Carbon and energy metabolism of oxidase-positive saprophytic fluorescent Pseudomonas spp;Metabolisme carbone et energetique des Pseudomonas spp fluorescents saprophytes oxydase positive

Agronomie

Volumn 17, Issue 9-10, 1997, Pages 427-443

  Latour, X ^a   Lemanceau, P ^a  

^a CEMAGREF   (France)

Author keywords

Catabolism; Low molecular weight organic compounds; P fluorescens; P putida; Pseudomonas chlororaphis; Respiratory pathways

Indexed keywords

PSEUDOMONAS; PSEUDOMONAS CHLORORAPHIS; PSEUDOMONAS FLUORESCENS; PSEUDOMONAS PUTIDA;

EID: 0031433014     PISSN: 02495627     EISSN: None     Source Type: Journal    
DOI: 10.1051/agro:19970901     Document Type: Article

References (105)

1. Beauchamp EG, Trevors JT, Paul JW (1989) Carbon sources for bacterial denitrification. Adv Microb Sci 10, 113-142
2. Blachnitsky EO, Wengenmayer F, Kurtz G (1974) D-galactose dehydrogenase from Pseudomonas fluorescens: purification, properties and structure. Eur J Biochem 47, 235-250
3. Boos W, Ehmann U, Forkl H, Klein W, Rimmele M, Postma P (1990) Trehalose transport and metabolism in Escherichia coli. J Bacteriol 172, 3450-3461
4. Bowen GD, Rovira AD (1976) Microbial colonization of plant roots. Annu Rev Phytopathol 14, 121-144
5. Brünker P, Altenbuchner J, Kulbe KD, Mattes R (1997) Cloning, nucleotide sequence and expression of a mannitol dehydrogenase gene from Pseudomonas fluorescens DSM 50106 in Escherichia coli. Biochimica er Biophysica Acta 1351, 157-167
6. Campbell JIA, Jacobsen CS, Sorensen J (1995) Species variation and plasmid incidence among fluorescent Pseudomonas strains isolated from agricultural and industrial soils. FEMS Microbiol Ecol 18, 51-62
7. Campbell JJR, Ramakrishnan T, Linnes AG, Eagles BA (1956) Evaluation of the energy gaines by Pseudomonas aeruginosa during the oxidation of Slucose to 2-ketogluconate. Can J Microbiol 2, 304-312
8. Chang YF, Adams E (1971) Induction of separate catabolic pathways for L-lysine and D-lysine in Pseudomonas putida. Biochem Biophys Res Comm 45, 570-577
9. Clays-Josserand A, Lemanceau P, Philippot L, Lensi R (1995) Influence of two plant species (flax and tomato) on the distribution of nitrogen dissimilative abilities within fluorescent Pseudomonas spp. Appl Environ Microbiol 61, 1745-1749
10. Colbert SF, Schroth MN, Weinhold AR, Hendson M (1993) Enhancement of population densities of Pseudomonas putida PpG7 in agricultural ecosystems by selective feeding with the carbon source salicylate. Appl Environ Microbiol 59, 2064-2070
11. Cooper RA, Kornberg HL (1964) The utilization of itaconate by Pseudomonas sp. Biochem J 91, 82-91
12. Cunin R, Glansdorff N, Piérard A, Stalon V (1986). Biosynthesis and metabolism of arginine in bacteria. Microbiol Rev 50, 314-352
13. Cuskey SM, Phibbs PV (1985) Chromosomal mutations affecting glycerol and glucose catabolism in Pseudomonas aeruginosa PAO. J Bacteriol 162, 872-880
14. Dagley S (1986) Biochemistry of aromatic hydrocarbon degradation in Pseudomonas. In : The Bacteria (JR Sokatch, LN Ornston, eds), Academic Press, 10, 527-555
15. De Ley J (1960) Comparative carbohydrate metabolism and localization of enzymes in Pseudomonas and related micro-organisms. J Appl Bacteriol 23, 400-441
16. De Ley J, Doudoroff M (1957) The metabolism of D-galactose in Pseudomonas saccharophila. J Biol Chem 213, 745-757
17. Digat B, Gardan L (1987) Caractérisation, variabilité et sélection des souches bénéfiques de Pseudomonas fluorescens et Pseudomonas putida. Bull OEPP 17, 559-568
18. Dowling DN, O'Gara F (1994) Metabolites of Pseudomonas involved in the biocontrol of plant disease. Trends Biotechnol 12, 133-140
19. D'Souza-Ault M, Tombras-Smith L, Smith GM (1993) Roles of N-acetylglutaminylglutamine amide and glycine betaine in adaptation of Pseudomonas aeruginosa to osmotic stress. Appl Environ Microbiol 59, 473-478
20. Eisenberg RC, Butters SJ, Quay SC, Friedman SB (1974) Glucose uptake and phosphorylation in Pseudomonas fluorescens. J Bacteriol 120, 147-153
21. Engesser KH, Schule P (1989) Degradation of 2-bromo-, 2-chloro- and 2-fluorobenzoate by Pseudomonas putida CLB250. FEMS Microbiol Lett 60, 143-147
22. Entner N, Doudoroff M (1952) Glucose and gluconic oxidation of Pseudomonas saccharophila. J Biol Chem 196, 853-862
23. Frey P, Frey-Klett P, Garbaye J, Berge O, Heulin T (1997) Metabolic and genotypic fingerprinting of fluorescent pseudomonads associated with the Douglas Fir-Laccaria bicolor mycorrhizosphere. Appl Environ Microbiol 63, 1852-1860
24. Fothergill JC, Guest JR (1977) Catabolism of L-lysine by Pseudomonas aeruginosa. J Gen Microbiol 99, 139-155
25. Gamble TN, Betlach MR, Tiedje JM (1977) Numerically dominant denitrifying bacteria from world soils. Appl Environ Microbiol 33, 926-939
26. Golovleva LA, Maltseva OV, Solyanikova IP (1992) Metabolism of foreign compounds in Pseudomonas spp (1992) In : Pseudomonas, Molecular Biology and Biotechnology (E Galli, S Silver, B Witholt, eds), Am Soc Microbiol, Washington, DC, 231-238
27. Gottschalk G (1979a) Catabolic activities of aerobic heterotrophs. I. Degradation of polymers by exoenzymes. In : Bacterial Metabolism (MP Starr, ed), Springer-Verlag, New York, 114-116
28. Gottschalk G (1979b) Catabolic activities of aerobic heterotrophs. III. Growth with organic acids. In : Bacterial Metabolism (MP Starr, ed), Springer-Verlag, New York, 118-123
29. Grimont PAD, Vancanneyt M, Lefèvre M, Vandemeulebroecke K, Vauterin L, Brosh R, Kersters K, Grimont F (1996) Ability of biolog and biotype-100 systems to reveal the taxonomic diversity of the pseudomonads. System Appl Microbiol 19, 510-527
30. Haas D, Galimand M, Gamper M, Zimmermann A (1990) Arginine network of Pseudomonas aeruginosa: Specific and global controls. In : Pseudomonas Biotransformations, Pathogenesis, and Evolving Biotechnology (S Silver, AM Chakrabarty, B Iglewski, S Kaplan, eds), Am Soc Microbiol, Washington, DC, 303-313
31. Haas D, Keel C, Laville J, Maurhofer M, Oberhänsli T, Schnider U, Voisard C, Wüthrich B, Défago G (1991) Secondary metabolites of Pseudomonas fluorescens strain CHA0 involved in the suppression of root diseases. In : Advances in Molecular Genetics of Plant-Microbe Interactions (H Hennecke, DPS Verma, eds), Kluwer Academic Publishers, Dordrecht, 1, 450-456
32. Harayama S, Wasserfallen A, Cerdan P, Rekik M (1992) Mutational modification of the substrate specificity of catechol 2,3-dioxygenase encoded by TOL plasmid pWW0 of Pseudomonas putida. In : Pseudomonas, Molecular Biology and Biotechnology (E Galli, S Silver, B Witholt, eds), Am Soc Microbiol, Washington, DC, 223-230
33. Harwood CS, Rivelli M, Ornston LN (1984) Aromatic acids are chemoattractants for Pseudomonas putida. J Bacteriol 160, 622-628
34. Hojberg O, Sorensen J (1993) Microgradients of microbial oxygen consumption in a barley rhizosphere model system. Appl Environ Microbiol 59, 431-437
35. Holloway BW (1992) Pseudomonas in the late twentieth century. In : Pseudomonas, Molecular Biology and Biotechnology (E Galli, S Silver, B Witholt, eds), Am Soc Microbiol, Washington, DC, 1-8
36. Hug DH, Roth D, Hunter J (1968) Regulation of histidine catabolism by succinate in Pseudomonas putida. J Bacteriol 96, 396-402
37. Hunt JC, Phibbs JR (1983) Regulation of alternate peripheral pathways of glucose catabolism during aerobic and anaerobic growth of Pseudomonas aeruginosa. J Bacteriol 154, 793-802
38. Jacques MA (1994) Écologie quantitative et physiologie de la communauté bactérienne épiphylle de Cichorium endivia var latifolia L. Thèse de doctorat, université de Paris-XI, Orsay, 123 p
39. Knowles R (1982) Denitrification. Microbiol Rev 46, 43-70
40. Knowles CJ, Bunch AW (1986) Microbial cyanide metabolism. Adv Microb Physiol 27, 73-111
41. 2-14C acetate by Pseudomonas fluorescens, and by a Corynebacterium, grown on ammonium acetate. Biochem J 68, 535-541
42. Komberg HL, Madsen NB (1958) The metabolism of C2 compounds in microorganisms. 3. Synthesis of malate from acetate via the glyoxylate cycle. Biochem J 68, 549-557
43. Lam ST, Torkewitz NR, Nautiyal CS, Dion P (1991) Impact of the ability to utilize a single substrate on colonization competitiveness. Phytopathology 81, 1163-1164
44. Latour X (1996) Effet de la plante et du sol sur la diversité des populations telluriques de Pseudomonas spp fluorescents. Thèse de doctorat, université de Bourgogne, 70 p
45. Latour X, Corberand T, Laguerre G, Allard F, Lemanceau P (1996) The composition of fluorescent pseudomonad populations associated with roots is influenced by plant and soil type. Appl Environ Microbiol 62, 2449-2456
46. Lemanceau P (1992) Effets bénéfiques de rhizobactéries sur les plantes : exemple des Pseudomonas spp fluorescens. agronomie 12, 413-437
47. Lemanceau P, Alabouvette C (1993) Suppression of fusarium wilts by fluorescent pseudomonads: mechanisms and applications. Biocontrol Sci Technol 3, 219-234
48. Lemanceau P, Corberand T, Gardan L, Latour X, Laguerre G, Boeufgras JM, Alabouvette C (1995) Effect of two plant species (Linum usilatissinum L., Lycopersicon esculentum Mill.) on the diversity of soil populations of fluorescent pseudomonads. Appl Environ Microbiol 61, 1004-1012
49. Lessie TG, Phibbs PV Jr (1984) Alternative pathways on carbohydrate utilization in Pseudomonads. Annu Rev Microbiol 38, 359-387
50. Lewis KF, Blumenthal HJ, Weinrack RS, Weinhouse S (1955) An isotope tracer study of glucose catabolism in Pseudomonas fluorescens. J Biol Chem 216, 273-278
51. Lucas P, Samiguet A, Collet JM, Lucas M (1989) Réceptivité des sols au piétin-échaudage (Gaeumannomyces graminis var. tritici) : influence de certaines techniques culturales. Soil Biol Biochem 21, 1073-1078
52. McGregor CH, Wolff JA, Arora SK, Hylemon PB, Phibbs PV (1992) Catabolite repression control in Pseudomonas aeruginosa. In : Pseudomonas, Molecular Biology and Biotechnology (E Galli, S Silver, B Witholt, eds), Am Soc Microbiol, Washington, DC, 198-207
53. Marshall VD, Sokatch JR (1972) Regulation of valine catabolism in Pseudomonas putida. J Bacteriol 110, 1073-1081
54. Martin RR, Marshall VD, Sokatch JR, Unger L (1973) Common enzymes of branched-chain amino acid catabolism in Pseudomonas putida. J Bacteriol 115, 198-204
55. Martinez-Blanco H, Reglero A, Rodriguez-Aparicio LB, Luengo JM (1990) Purification and biochemical characterization of phenylacetyl-CoA ligase from Pseudomonas putida. A specific enzyme for the catabolism of phenylacetic acid. J Biol Chem 265, 7084-7090
56. Matsubara T, Zumft WG (1982) Identification of a copper protein as part of the nitrous oxide-reducing system in nitrite-respiring (denitrifying) pseudomonads. Arch Microbiol 132, 322-328
57. Maurhofer M, Keel C, Schnider U, Voisard C, Haas D, Défago G (1992) Influence of enhanced antibiotic production in Pseudomonas fluorescens strains CHA0 on its disease suppressive capacity. Phytopathology 82, 190-195
58. Mercenier A, Simon JP, Vander Wauven C, Haas D, Stalon V (1980) Regulation of enzyme synthesis in the arginine deiminase pathway of Pseudomonas aeruginosa. J Bacteriol 144, 159-163
59. Miller DL, Rodwell VW (1971) Metabolism of basic amino acids in Pseudomonas putida. J Biol Chem 246, 2758-2764
60. Miller KJ, Wood JM (1996) Osmoadaptation by rhizosphere bacteria. Annu Rev Microbiol 50, 101-136
61. Misaghi I, Grogan RG (1969) Nutritional and biochemical comparisons of plant-pathogenic and saprophytic fluorescent pseudomonads. Phytopathology 59, 1436-1450
62. Müller J, Boller T, Wieken A (1995) Trehalose and trehalase in plants: recent developments. Plant Sci 112, 1-9
63. Newell CP, Lessie TG (1970) Induction of histidine-degrading enzymes in Pseudomonas aeruginosa. J Bacteriol 104, 596-598
64. Numa S, Ishimura Y, Nakazawa D, Okazaki T, Hayaishi O (1964) Enzymatic studies on the metabolism of glutarate in Pseudomonas. J Biol Chem 239, 3915-3922
65. Ornston LN (1971) Regulation of catabolic pathways in Pseudomonas. Bacteriol Rev 35, 87-116
66. Palleroni NJ (1984) Gram-negative aerobic rods and cocci: family I Pseudomonadaceae. In : Bergey's Manual of Bacteriology (NR Krieg, JG Holt, eds), William & Wilkins, Baltimore, 1, 141-199
67. Palleroni NJ (1992). Introduction to the family Pseudomonadaceae. In : The Prokaryotes (MP Balows, ed), Springer-Verlag, New York, 3071-3085
68. Palleroni NJ, Doudoroff M (1956) Mannose isomerase of Pseudomonas saccharophila. J Biol Chem 218, 535-548
69. Phillips AT, Mulfinger LM (1981) Cyclic adenosine 3′,5′-monophophate levels in Pseudomonas putida and Pseudomonas aeruginosa during induction and carbon catabolite repression of histidase synthesis. J Bacteriol 145, 1286-1292
70. Pierson III LS, Wood DW (1994) A diffusible signal molecule regulates phenazine expression in Pseudomonas aureofaciens. Phytopathology 84, 1082
71. Pierson III LS, Keppenne VD, Wood DW (1994) Phenazine antibiotic biosynthesis in Pseudomonas aureofaciens 30-84 is regulated by PhzR in response to cell density. J Bacteriol 176, 3966-3974
72. Quay SC, Friedman SB, Eisenberg RC (1972) Gluconate regulation of glucose catabolism in Pseudomonas fluorescens. J Bacteriol 112, 291-298
73. Rayney PB, Bayley MJ, Thompson IP (1994) Phenotypic and genotypic diversity of fluorescent pseudomonads isolated from field-grown sugar beet. Microbiology 140, 2315-2331
74. Roehl RA, Phibbs PV (1982) Characterization and genetic mapping of fructose phosphotransferase mutations in Pseudomonas aeruginosa. J Bacteriol 149, 897-905
75. Sands DC, Gleason FH, Hildebrand DC (1967) Cytochromes of Pseudomonas syringae. J Bacteriol 94, 1785-1786
76. Sawyer MH, Baumann P, Baumann L, Berman SM, Canovas JL (1977) Pathways of D-fructose catabolism in species of Pseudomonas. Arch Microbiol 112, 49-55
77. Schleissner C, Reglero A, Luengo JM (1997) Catabolism of D-glucose by Pseudomonas putida U occurs via extracellular transformation into D-gluconic acid and induction of a specific gluconate transport system. Microbiology 143, 1595-1603
78. Schleissner C, Olivera ER, Fernandez-Valverde M, Luengo JM (1994) Aerobic catabolism of phenylacetic acid in Pseudomonas putida U: biochemical characterization of a specific phenylacetic acid transport system and formal demonstration that phenylacetyl-Coenzyme A is a catabolic intermediaite. J Bacteriol 176, 7667-7676
79. Schroth MN, Hildebrand DC, Panopoulos N (1992) Phytopathogenic pseudomonads and related plant-associated pseudomonads.. In : The Prokaryotes (MP Balows, ed), Springer-Verlag, New York, 3104-3131
80. Schweizer HP, Po C (1996) Regulation of glycerol metabolism in Pseudomonas aeruginosa: characterization of the glpR repressor gene. J Bacteriol 178, 5215-5221
81. Sebek OK, Randles CI (1952) the oxidative dissimilation of mannitol and sorbitol by Pseudomonas fluorescens. J Bacteriol 63, 693-695
82. Shanahan P, O'Sullivan DJ, Simpson P, Glennon JD, O'Gara F (1992) Isolation of 2,4-diacetylphloroglucinol from a fluorescent pseudomonad and investigation of physiological parameters influencing its production. Appl Environ Microbiol 58, 353-358
83. Shoesmith JG, Sherris JC (1960) Studies on the mechanism of arginine-activated motility in a Pseudomonas strain. J Gen Microbiol 22, 10-24
84. Siegel LS, Phibbs PV (1979) Glycerol and L-(-glycerol-3-phosphate uptake by Pseudomonas aeruginosa. Curr Microbiol 2, 251-256
85. Smith M, Tiedje JM (1979) The effect of roots on soil denitrification. Soil Sci Soc Am J 43, 951-955
86. Stalon V, Mercenier A (1984) L-Arginine utilization by Pseudomonas species. J Gen Microbiol 130, 69-76
87. Stalon V, Ramos F, Pierard D, Wiame JM (1972) Regulation of the catabolic ornithine carbamoyle-transferase in Pseudomonas fluorescens: a comparaison with the anabolic transferase and with a mutationally modified cataboiic transferase. Eur J Biochem 29, 25-35
88. Stalon V, Vander Wauven C, Momin P, Legrain C (1987) Catabolism of arginine, citrulline and ornithine by Pseudomonas and related bacteria. J Gen Microbiol 133, 2487-2495
89. Stanier RY, Ornston LN (1973) Aromatic compounds that can be converted to catechol. Adv Microbial Physiol 9, 89-151
90. Stanier RY, Palleroni NJ, Doudoroff M (1966) The aerobic pseudomonads, a taxonomic study. J Gen Microbiol 43, 159-271
91. Stephens PM, Crowley JJ, O'Connell C (1993) Selection of pseudomonad strains inhibiting Pythium ultimum on sugarbeet seeds in soil. Soil Biol Biochem 9, 1283-1288
92. Styrvold OB, Strom AR (1991) Synthesis, accumulation, and excretion of trehalose in osmotically stressed Escherichia coli K-12 strains: influence of amber suppressors and function of the periplasmic trehalase. J Bacteriol 173, 1187-1192
93. Thomashow LS (1991) Molecular basis of antibiosis mediated by rhizosphere pseudomonads. In : Plant Growth-Promoting Rhizobacteria, Progress and Prospects (C Keel, B Koller, G Défago, eds), IOBC/WPRS, XIV/8, 109-115
94. Thöny-Meyer L (1997) Biogenesis of respiratory cytochromes in bacteria. Microbiol Mol Biol Rev 61, 337-376
95. Thornley MJ (1960) The differentiation of Pseudomonas from other gram-negative bacteria on the basis of arginine metabolism. J Appl Bacteriol 23, 37-52
96. Tiedje JM (1988) Ecology of denitrification and dissimilatory nitrite reduction to ammonium. In : Biology of Anaerobic Microorganisms (AJB Zehnder, ed), Wiley Interscience Publications, New York, 179-244
97. Vancura V (1988) Plant metabolites in soil. In : Soil Microbial Association (V Vancura, V Kunc, eds), Eisevier, Amsterdam, 57-132
98. Van Laere A (1989) Trehalose, reserve and/or stress metabolite ? FEMS Microbiol Rev 63, 201-210
99. Voisard C, Bull C, Keel C, Laville J, Maurhofer M, Schnider U, Défago G, Haas D (1994) Biocontrol of root diseases by Pseudomonas fluorescens CHA0: current concepts and experimental approaches. In : Molecular Ecology of Rhizosphere Microorganisms (F O'Gara, D Dowling, B Boesten, eds), VCH, Weinheim, 67-89
100. Weller DM, Thomashow LS (1993) Microbial metabolites with biological activity against plant pathogens. In : Pest Management: Biologically Based Technologies (RD Lumsden, JL Vaughn, eds), Am Chem Soc. Washington, DC, 67-89
101. Whiting PH, Midgley M, Dawes EA (1976) The role of glucose limitation in the regulation of the transport of glucose, gluconate and 2-oxogluconate, and of glucose catabolism, in Pseudomonas aeruginosa. J Gen Microbiol 92, 304-310
102. Wolfe JB, Mer D. Rittenberg SC (1954) Malonate decarboxylation by Pseudomonas fluorescens. I. Observations with dry cells and cell-free extracts. J Biol Chem 209, 867-874
103. 2+ dependency and trapping of active intermediates. J Biol Chem 209, 875-884
104. Wolfe JB, Ivler D, Rittenberg SC (1954) Malonate decarboxylation by Pseudomonas fluorescens. III. Role of acetylCoA. J Biol Chem 209, 885-895
105. Wood WA (1955) Pathways of carbohydrate degradation in Pseudomonas fluorescens. Bacteriol Rev 19, 222-233