Roles for the Saccharomyces cerevisiae SDS3, CBK1 and HYM1 genes in transcriptional repression by SIN3

Genetics

Volumn 154, Issue 2, 2000, Pages 573-586

  Borland, Scott ^a   Deegenaars, Michelle L ^a   Stillman, David J ^a  

^a UNIVERSITY OF UTAH HEALTH SCIENCES CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE DEACETYLASE;

ARTICLE; GENE CONTROL; GENE FUNCTION; GENE MUTATION; GENE REPRESSION; GENE SILENCING; GENETIC ANALYSIS; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; SACCHAROMYCES CEREVISIAE; TELOMERE;

BASE SEQUENCE; DNA PRIMERS; GENE EXPRESSION REGULATION, FUNGAL; GENES, FUNGAL; MUTAGENESIS; REPRESSOR PROTEINS; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION, GENETIC;

SACCHAROMYCES CEREVISIAE;

EID: 0033962295     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (58)

1. AU-ANH, I,., R. MüHLE, H. Hou, JR.J. POTES, L. CIIIN et a., 1997 Role for N-CoR and histonc dcacetylase in SinS-mediated transcriptional repression. Nature 387: 49-55.
2. APAKICIO, O. M., B. L. BII.LINOTON and D. E. GOTTSCIII.INC, 1991 Modifiers of position cfTect arc shared between telomeric and silent mating-t)pc loci in S. cerevisiae. Cell 66: 1279-1287.
3. AUSUBF.I., F. M., R. BRENT, R. E. KINOSTON, D. E. MOORE.J. G. SEIDMAN et ni., 1987 Current Protocols in Molecular ISiolofy. John Viley Sons, New York.
4. GOWDISII, K. S., and A. P. MITCIIKI.L, 1993 Bipartite structure of an early mciotic upstream activation sequence from Saccharomyces cerevisiae. Mol. Cell. Biol. 13: 2172-2181.
5. BRACIIMANN, C. B., A. DA VIES. G. J. COST, E. CAI-UTO.J. Li et al., 1998 Designer deletions strains derived from Saccharomyces cerev'uiae S288C: a useful set of strains and plasmids for PCR-mcdiated gene disniption and other applications. Yeast 14: 115-132.
6. BRF.F.DEN, L., and K. NASMYTII, 1987 Cell cycle control of the yeast HO gene: cis- and trans-acting regulators. Cell 48: 389-397.
7. CAIRN'S, B. R., R. S. LEVINSON, K. R. YAMAMOTO and R. D. KORNBERG, 1996 Essential role of Swp73p in the function of yeast Swi/Snf complex. Genes Dev. 10: 2131-2144.
8. CROSS, F. R., 1997 'Marker swap' plasmids: convenient tools for budding yeast molecular genetics. Yeast 13: 647-653.
9. DF. RUIîF.RTIS, F., D. KADOSII, S. HENCHOZ, D. PAUI.I, G. RKUTER et al, 1990 The histone deacetylase RPD3 counteracts genomic silencing in Drosojihila and yeast. Nature 384: 589-591.
10. GIFTJ., R. D., and A. SUGINO, 1988 New ycast-£sf/w/iiVz coli shuttlevectors constructed with in vitro mntagenized yeast genes lacking six-base pair restriction sites. Gene 74: 527-534.
11. GOTTSCIILING, D. E., O. M. APARICIO, B. L. BII.I.INGTON and V. A. ZAKIAN, 1990 Position effect at S. cerevisiae lcomcrcs: reversible repression of Pol II transcription. Cell 63: 751-762.
12. GRUNSTFIN, M., 1997 Histone acetylation in chromatin structure and transcription. Nature 389: 349-352.
13. GRUNSTEIN, M., 1998 Yeast heterochromatin: regulation of its assembly and inheritance by Iiistoncs. Cell 93: 325-328.
14. GUTHRIE, C., and G. R. FINK (Editors), 1991 Guide to Yeast Genetics and Molecular Hiolofy. Academic Press, San Diego.
15. HAMPSEY, M., 1997 A SAGA of histone acetylation and gene expression. Trends Genet. 13: 427-429.
16. HAN, M., U. J. KIM, P. KAYNE and M. GRUNSTEIN, 1988 Depletion of histone H4 and nuclcosomes activates the I'HOygcnc in Saccliaromyces rerevisine. EMBOJ. 7: 2221-2228.
17. HASSIG, C. A., T. C. FLEISCHER, A. N. BII.I.IN, S. L. SCHREIBER and D. E. AVER, 1997 Histone deacctylasc activity is required for full transcriptional repression by mSinSA. Cell 89: 341-347.
18. HEINZEL, T., R. M. I.AVINSKY, T. M. MUI.LKN, M. SODFRSTROM, C. D. I.AIIERTY et al., 1997 A complex containing N-CoR, mSinS and histone deacetylase mediates transcriptional repression. Nature 387: 43-48.
19. HFI-WORTH, S. R., H. FRIESEN andj. SEGAI.E, 1998 A'DIIOand the meiotic recombination checkpoint regulate expression of middle spomlation-specific genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 18: 5750-5761.
20. HILL, J. E., A. M. MYF.RS, T. J. KOERNER and A. TXAGOLOFF, 1986 Yeast/E. coli shuttle vectors with multiple unique restriction sites. Yeast 2: 163-167.
21. HUDAK, K.,J. LOPES and S. HENRY, 1994 Apleiotropicphospholipid biosynthetic regulatory mutation in Saccharomyces cerevisiae is allelic to 5 (sflil, ume-4, r/xll). Genetics 136: 475-183.
22. HUNTER, T., and G. D. PLOWMAN, 1997 The protein kinases of budding yeast: six score and more. Trends Genet. 22: 18-22.
23. KADONAGA, J. T., 1998 Eukaryotic transcription: an interlaced network of transcription factors and chromatin-modifying machines. Cell 92: 307-313.
24. KADOSII, D., and K. STRUIIL, 1997 Repression by Umc6 involves recruitment of a complex containing Sin3 coreprcssor and Rpd3 histone deacetylase to target promoters. Cell 89: 365-371.
25. KADOSII, D., and K. STRUIIL, 1998a Histone deacetylase activity of Rpd3 is important for transcriptional repression in vivo. Genes Dcv. 12: 797-805.
26. KAUOSII, D., and K. STRUIIL, 1998b Targeted recruitment of the Sin3-Rpd3 histone deacetylase complex generates a highly localized domain of repressed chromatin in vivo. Mol. Cell. Biol. 18: 5121-5127.
27. KAROS, M., and R. FISCHER, 1999 Molecular characterization of HyinA, an cvolutionarily highly conserved and highly expressed protein of Asjiergi/lus nirlulans. Mol. Gen. Genet. 260: 510-521.
28. KASTEN, M. M., S. DORLAND and D.J. STILI.MAN, 1997 A large protein complex containing the SinSp and RpdSp transcriptional regulators. Mol. Cell. Biol. 16: 4215-4221.
29. KINGSTON, R. E., C. A. BUNKER and A. N. IMBAI.ZANO, 1996 Rcprcs-sion and activation by mulliprotcin complexes that alter chromatin structure. Genes Dev. 10: 905-920.
30. I.AIIF.RTY, C., V. M. YANG, J. M. SUN, J. R. DAVIE, E. SETO et al., 1997 Ilistonc cleacetylases associated with the mSINS corcpressor mediate Mad:Max transcriptional repression. Cell 89: 349356.
31. LONGTINE, M. S., A. McKtNziE III, D. J. DEMAKINI, N. G. SHAH, A. WACH el al, 1998 Additional modules forvcrsatile and economical I'CR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
32. NAGV, I., H. Y. KAO, D. CHAKRAVARTI, R. J. Lix, C. A. HASSIG et ai, 1997 Nuclear receptor repression mediated by a complex containing SMRT, mSinSA, and historic deacctylase. Cell 89:373380.
33. N'ASMVTII, K., D. STII.LMAN and D. KIPLING, 1987 Both positive and negative regulators of HO transcription are required for molhercell-specific mating-typc snitching in yeast. Cell 48: 579-587.
34. PAZIN, M. J., antlj. T. KADONAGA, 1997 liat's up and down with histonc dcacctylation and transcription? Cell 89: 325-328.
35. RENAULD, H., O. M. APARICIO, P. D. ZIKRATH, B. L. BILLINC.TON, S. K. CHHABLANI et al., 1993 Silent domains arc assembled continuously from the telomcre and arc defined by promoter distance and strength, and by SIRS dosage. Genes Dcv. 7:1133-1145.
36. RUNULKTT, S. E., A. A. CARMEN, R. KOBAYASHI, S. BAVYKIN, B. M. TURNER et al., 1996 HDA1 and RPD3 are members of distinct yeast histonc dcacetylasc complexes that regulate silencing and transcription. Proc. Nail. Acad. Sei. USA 93: 14503-14508.
37. RUNDLETT, S. E., A. A. CARMEN, N. SUKA, B. M. TURNER and M. GRUNSTEIN, 1998 Transcriptional repression by UME6 involves deacctylation of lysine 5 of histonc H4 by RPD3. Nature 392: 831-835.
38. SHERMAN, F., 1991 Getting started with yeast. Methods Enzymol. 194: 1-21.
39. STERNBERG, P. W., M. J. STERN, I. CLARK and I. HF.RSKOWITZ., 1987 Activation of the yeast //Ogenc by release from multiple negative controls. Cell 48: 567-577.
40. STII.I.MAN, D. J., S. DORLANU and Y. Yu, 1994 Epistasis analysis of suppressor mutations that allow HO expression in the absence of the yeast S'15 transcriptional activator. Genetics 136:781-788.
41. STRICH, R., M. R. SLATER and R. E. ESPOSITO, 1989 Identification of negative regulator)- genes that govern the expression of early mciotic genes in yeast. Proc. Natl. Acad. Sei. USA 86: 1001810022.
42. STRUHL, K., 1998 Histonc acctylation and transcriptional regulatory mechanisms. Genes Dev. 12: 599-606.
43. SUN, Z. V., and M. HAMPSKY, 1999 A general requirement for the Sin3-Rpd3 hislone dcacetylase complex in regulating silencing in Saccharomyces cerei'isiae. Genetics 152: 921-932.
44. SUSSEL, I,., D. VANNIER and D. SHORE, 1995 Suppressors of defective silencing in yeast: effects on transcriptional repression at the HMI{ locus, cell growth and telomere structure. Genetics 141: 873-888.
45. TAUNTON,J., C. A. HASSIG and S. L. SCHREIBER, 1996 A mammalian histonc cleacctylase related to the yeast transcriptional regulator RpclSp. Science 272: 408-411.
46. THOMAS, B. J., and R. ROTIISTEIN, 1989 Elevated recombination rates in transcriptionally active DNA. Cell 56: 619-630.
47. TOII-E, A., Y. UEDA, S. I. KAKIMOTO and Y. OSIIIMA, 1973 Isolation and characterization of acid phosphatasc mutants in Saccharomyces cerevisiae. J. Bactcriol. 113: 727-738.
48. VANNIER, D., D. BALDERES and D. SHORE, 1996 Evidence that the transcriptional regulators S/A'3 and 1U'D3, and a novel gene (SÜS3) with similar functions, arc involved in transcriptional silencing in Saccharomyces cerevisiae. Genetics 144: 1343-1353.
49. VIUAL, M., and R. F. GABER, 1991 ItI'DJ encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae. Mol. Cell. Biol. 11: 63176327.
50. Vm.M, M., and R. F. GARF.R, 1994 Selectable marker replacement in Saccharomyces cerevisiae. Yeast 10: 141-149.
51. VIDAI., M., A. M. RUCKI.EY, F. HII.GER and R. F. GABER, 1990 Direct selection for mutants with increased K+ transport in Saccharomyces cerevisiae. Genetics 125: 313-320.
52. VIDAI, M., R. STRICH, R. E. ESPOSITO and R. F. GABER, 1991 IWD1 (SI'3/UMK-t) is required for maximal activation and repression of diverse yeast genes. Mol. Cell. Biol. 11: 6306-6316.
53. WANG, H., and D. J. STILLMAN, 1993 Transcriptional repression in Saccharomyces cerevisiae by a SIN3-lexA fusion protein. Mol. Cell. Biol. 13: 1805-1814.
54. WANG, H., L. REYNOLDS- IAGEK and D. J. STILLMAN, 1991 Genetic interactions between SA'3 and the Sacrtiaromyces cerevisiae AICAI1, 577:72, and 5U77 transcriptional activators. Mol. Gen. Genet. 245: 675-685.
55. WOLFFE, A. P., 1997 Transcriptional control: Sinful repression. Nature 387: 16-17.
56. WOLFFE, A. P., and D. PRUSS, 1996 Targeting chromatin disruption: transcription regulators that acetylatc histones. Cell 84: 817-819.
57. ZIIANG, Y., R. IRATNI, H. ERDJUMF.NT-BROMAGE, P. TEMPST and D. REINBERG, 1997 Histonc dcacetylascs and SAP18, a novel polypcptidc, arc components of a Iiiiman Sin3 complex. Cell 89: 357-361.
58. ZIIANG, Y., Z. W. SUN, R. IRATNI, H. ERDJUMENT-BROMAGE, P. TE.MPST et ni., 1998 SAP30, a novel protein conserved between human and yeast, is a component of a historic deacetylase complex. Mol. Cell 1: 1021-1031.