CIF Applications. VIII. pdb2cif: Translating PDB entries into mmCIF format

Journal of Applied Crystallography

Volumn 31, Issue 2, 1998, Pages 282-295

  Bernstein, Herbert J ^a   Bernstein, Frances C ^b   Bourne, Philip E ^c,d  

^a Bernstein + Sons   (United States)

^b BROOKHAVEN NATIONAL LABORATORY   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

^d San Diego   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0006001964     PISSN: 00218898     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0021889897007309     Document Type: Article

References (17)

1. Abola, E. E., Prilusky, J., Manning, N. O. & Sussman, J. L. (1996). Acta Cryst. A52 Supplement, C-586.
2. Baker, E. N., Blundell, T. L., Cutfield, J. E. Cutfield, S. M., Dodson, E. J., Dodson, G. G., Crowfoot Hodgkin, D. M., Hubbard, R. E., Isaacs, N. W., Reynolds, C. D., Sakabe, K., Sakabe, N. & Vijayan, N. M. (1988). Philos. Trans. R. Soc. London, 319, 369-456.
3. Berman, H. M. & Westbrook, J. D. (1994). A Gentle Introduction to One Working Alternative DDL for Macromolecular Structure. In European Macromolecular Crystallographic Information (mmCIF) Workshop, edited by S. D. Wodak. Free University of Brussels, European Commission.
4. Bernstein, F. C., Koetzle, T. F., Williams, G. J. B., Meyer, E. F. Jr, Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T. & Tasumi, M. (1977). J. Mol. Biol. 112, 535-542.
5. Bourne, P. E., Berman, H. M., McMahon, B., Watenpaugh, K. D., Westbrook, J. & Fitzgerald, P. M. D. (1997). Methods Enzymol. 277, 571-590.
6. Codd, E. F. (1970). Commun. ACM, 13, 377-387.
7. Codd, E. F. (1972). Data Base Systems, edited by R. Rustin, pp. 33-64. Englewood Cliffs, NJ: Prentice-Hall.
8. Fitzgerald, P. M. D., Berman, H. M., Bourne, P. E., McMahon, B., Watenpaugh, K. & Westbrook, J. (1996). Acta Cryst. A52 Supplement, C-576.
9. Frazao, C. Soares, C. M., Carrondo, M. A., Pohl, E., Dauter, Z., Wilson, K. S., Hervas, M., Navarro, J. A., De La Rosa, M. A. & Sheldrick, G. M. (1995). Structure (London), 3, 1159-1169.
10. Hall, S. R. (1991). J. Chem. Inf. Comput. Sci. 31, 326-333.
11. Hall, S. R. & Spadaccini, N. (1994). J. Chem. Inf. Comput. Sci. 34, 505-508 (see http://www.crystal.uwa.edu.au/cc_star.html).
12. Kernighan, B. W. & Ritchie, D. M. (1977). The M4 Macro Processor. Murray Hill, NJ: Bell Laboratories.
13. Protein Data Bank (1996). The Protein Data Bank Contents Guide: Atomic Coordinate Entry Format Description, Version 2.1, http:// www.pdb.bnl.gov/format.doc/format_home.html.
14. Raves, M. L., Harel, M., Pang, Y.-P., Silman, I., Kozikowski, A. P. & Sussman, J. L. (1977). Nat. Struct. Biol. 4, 57-63.
15. Shindyalov, I. N., Cooper, J., Chang, W. & Bourne, P. E. (1995). Proceedings of the 28th Hawaii International Conference on System Sciences, pp. 207-217. Los Alamitos, CA: IEEE Computer Society Press.
16. Speir, J. A., Munshi, S., Wang, G., Timothy, S., Baker, J. E. & Johnson, J. E. (1995). Structure (London), 3, 63-78.
17. Westbrook, J. & Hall, S. R. (1995). A Dictionary Description Language for Macromolecular Structure, Draft DDL V 2.1.0. IUCr COMCIFS, Chester, England. Available from http://ndbserver.rutgers.edu/ NDB/mmcif/ddl/index.html.