Functional interaction of CCR4-NOT proteins with TATAA-binding protein (TBP) and its associated factors in yeast

Genetics

Volumn 155, Issue 3, 2000, Pages 1045-1054

  Badarinarayana, Vasudeo ^a   Chiang, Yueh Chin ^a   Denis, Clyde L ^a  

^a UNIVERSITY OF NEW HAMPSHIRE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL PROTEIN; ISOPROTEIN; PROTEIN CCR4; PROTEIN NOT; REPRESSOR PROTEIN; TATA BINDING PROTEIN; UNCLASSIFIED DRUG;

ALLELE; ARTICLE; COMPLEX FORMATION; CONTROLLED STUDY; GENE INSERTION; GENE LOCUS; GENE REPRESSION; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN PROTEIN INTERACTION; TRANSCRIPTION REGULATION; YEAST;

ALCOHOL OXIDOREDUCTASES; AMINOHYDROLASES; CELL CYCLE PROTEINS; DNA-BINDING PROTEINS; FUNGAL PROTEINS; GENE DOSAGE; HYDRO-LYASES; PRECIPITIN TESTS; PYROPHOSPHATASES; RECOMBINANT FUSION PROTEINS; REPRESSOR PROTEINS; RIBONUCLEASES; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE DELETION; TATA-BOX BINDING PROTEIN; TRANSCRIPTION FACTOR TFIID; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, TFII; TRANSCRIPTION, GENETIC;

EUKARYOTA;

EID: 0033911879     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (43)

1. ARNDT, K. M., S. L. RICUPERO, D. M. EISENMANN and K. WINSTON, 1992 Biochemical and genetic characterization of a yeast TFIID mutant that alters transcription in vivo and DNA binding in vitro. Mol. Cell. Biol. 12: 2372-2382.
2. ARNDT, K. M., C. R. WOBBE, S. RICUPERO-HOVASSE, K. STRUHL and F. WINSTON, 1994 Equivalent mutations in the two repeats of yeast TATA-binding protein confer distinct TATA recognition specificities. Mol. Cell. Biol. 14: 3719-3728.
3. AUBLE, D. T., K. E. HANSEN, C. G. MUELLER, W. S. LANE, J. THORNER et al., 1994 Mot1, a global repressor of RNA polymerase II transcription, inhibits TBP binding to DNA by an ATP-dependent mechanism. Genes Dev. 8: 1920-1934.
4. BAL, V., C. SALVADORE, Y-C. CHIANG, M. COLLART, H. Y. LIU et al., 1999 The CCR4 and CAF1 proteins of the CCR4-NOT complex are physically and functionally separated from NOT2, NOT4, and NOT5. Mol. Cell. Biol. 19: 6642-6651.
5. BARROS LOPES, M., J.-Y. HO and S. I. REED, 1990 Mutations in cell division cycle genes CDC36 and CDC39 activate the Saccharomyces cerevisiae mating pheromone response pathway. Mol. Cell. Biol. 10: 2966-2972.
6. BENSON, J. D., M. BENSON, P. M. HOWLEY and K. STRUHL, 1998 Association of distinct yeast Not2 functional domains wilh components of Gcn5 histone acetylase and Ccr4 transcriptional regulatory complexes. EMBO J. 17: 6714-6722.
7. BORTVIN, A., and F. WINSTON, 1996 Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 272: 1473-1476.
8. BURATOWSKI, S., 1994 The basics of basal transcription by RNA polymerase II. Cell 77: 1-3.
9. CADE, R. M., and B. ERREDE, 1994 MOT2 encodes a negative regulator of gene expression that affects basal expression of the pheromone-responsive genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 14: 3139-3149.
10. CHEN, W., and K. STRUHL, 1988 Saturation mutagenesis of a yeast his3 "TATA element": genetic evidence for a specific TATA-binding protein. Proc. Natl. Acad. Sci. USA 85: 2691-2695.
11. CHIANG, Y. C., P. KOMARNITSKY, D. CHASE and C. L. DENIS, 1996 ADR1 activation domains contact the histone acetyltransferase GCN5 and the core transcriptional factor TFIIB. J. Biol. Chem. 271: 32359-32365.
12. COLLART, M. A., 1996 The NOT, SPT3, and MOT1 genes functionally interact to regulate transcription at core promoters. Mol. Cell. Biol. 16: 6668-6676.
13. COLLART, M. A., and K. STRUHL, 1993 CDC39, an essential nuclear protein that negatively regulates transcription and differentially affects the constitutive and inducible HIS3 promoters. EMBO J. 12: 177-185. (erratum: EMBO J. 12: 2990).
14. COLLART, M. A., and K. STRUHL, 1994 NOT1(CDC39), NOT2 (CDC36), NOT3, and NOT4 encode a global-negative regulator of transcription that differentially affects TATA-element utilization. Genes Dev. 8: 525-537.
15. DENIS, C. L., 1984 Identification of new genes involved in the regulation of yeast alcohol dehydrogenase II. Genetics 108: 833-841.
16. DENIS, C. L., and T. MALVAR, 1990 The CCR4 gene from Saccharomyces cerevisiae is required for both nonfermentative and spt-mediated gene expression. Genetics 124: 283-291.
17. DOLLARD, C., S. L. RICUPERO-HOVASSE, G. NATSOULIS, J. D. BOEKE and F. WINSTON, 1994 SPT10 and SPT21 are required for transcription of particular histone genes in Saccharomyces cerevisiae. Mol. Cell. Biol. 14: 5223-5228.
18. DRAPER, M. P., H. V. LIU, A. H. NELSBACH, S. P. MOSLEY and C. L. DENIS, 1994 CCR4 is a glucose-regulated transcription factor whose leucine-rich repeat binds several proteins important for placing CCR4 in its proper promoter context. Mol. Cell. Biol. 14: 4522-4531.
19. DRAPER, M. P., C. SALVADORE and C. L. DENIS, 1995 Identification of a mouse protein whose homolog in Saccharomyces cerevisiae is a component of the CCR4 transcriptional regulatory complex. Mol. Cell. Biol. 15: 3487-3495.
20. EISENMANN, D. M., C. DOLLARD and F. WINSTON, 1989 SPT15, the gene encoding the yeast TATA binding factor TFIID, is required for normal transcription initiation in vivo. Cell 58: 1183-1191.
21. EISENMANN, D. M., K. M. ARNDT, S. L. RICUPERO, J. W. ROONEY and F. WINSTON, 1992 SPT3 interacts with TFIID to allow normal transcription in Saccharomyces cerevisiae. Genes Dev. 6: 1319-1331.
22. GOPPELT, A., and M. MEISTERERNST, 1996 Characterization of the basal inhibitor of class II transcription NC2 from Saccharomyces rerevisiae. Nucleic Acids Res. 24: 4450-1455,
23. GOPPELT, A., G. STELZER, F. LOTTSPEICH and M. MEISTERERNST, 1996 A mechanism for repression of class II gene transcription through specific binding of NC2 to TBP-promoter complexes via heterodimeric histone fold domains. EMBO J. 15: 3105-3116.
24. HATA, H., H. MITSUI, H. LIU, Y. BAI, C. L. DENIS et al., 1998 Dhh1p, a putative RNA helicase, associates with the general transcription factors Pop2p and Ccr4p from Saccharomyces cerevisiae. Genetics 148: 571-579.
25. IRIE, K., K. YAMAGUCHI, K. KAWASE and K. MATSUMOTO, 1994 The yeast MOT2 gene encodes a putative zinc finger protein that serves as a global negative regulator affecting expression of several categories of genes, including mating-pheromone-responsive genes. Mol. Cell. Biol. 14: 3150-3157.
26. KLOPOTIWSKI, T., and A. WIATER, 1965 Synergism of aminotriazole and phosphate on the inhibition of yeast imidazole glycerol phosphate dehydratase. Arch. Biochem. Biophys. 112: 562-566.
27. KOMARNITSKY, P. B., E. R. KLEBANOW, P. A. WEIL and C. L. DENIS, 1998 ADR1-mediated transcriptional activation requires the presence of an intact TFIID complex. Mol. Cell. Biol. 18: 5861-5867.
28. LEE, T. I., J. J. WYRICK, S. S. KOH, E. G. JENNINGS, E. L. GADBOIS et al., 1998 Interplay of positive and negative regulators in transcription initiation by RNA polymerase II holoenzyme. Mol. Cell. Biol. 18: 4455-4462.
29. LIU, H.-Y., J. H. TOYN, Y.-C. CHIANG, M. P. DRAPER, L. H. JOHNSTON et al., 1997 DBF2, a cell cycle-regulated protein kinase, is physically and functionally associated with the CCR4 transcriptional regulatory complex. EMBO J. 16: 5289-5298.
30. LIU, H., V. BADARINARAYANA, D. AUDINO, J. RAPPSILBER, M. MANN et al., 1998 The NOT proteins are part of the CCR4 transcriptional complex and affect gene expression both positively and negatively. EMBO J. 17: 1096-1106.
31. MADISON, J. M., and F. WINSTON, 1997 Evidence that Spt3 functionally interacts with Mot1, TFIIA, and TATA-binding protein to confer promoter-specific transcriptional control in Saccharomyces cerevisiae. Mol. Cell. Biol. 17: 287-295.
32. MAHADEVAN, S., and K. STRUHL, 1990 Tc, an unusual promoter element required for constitutive transcription of the yeast HIS3 gene. Mol. Cell. Biol. 10: 4447-4455.
33. MALDONALDO, E., M. HAMPSEY and D. REINBERG, 1999 Repression: targeting the heart of the matter. Cell 99: 455-458.
34. MALVAR, T., R. W. BIRON, D. B. KABACK and C. L. DENIS, 1992 The CCR4 protein from Saccharomyces cerevisiae contains a leucine-rich repeat region which is required for its control of ADH2 gene expression, Genetics 132: 951-962.
35. MCKENZIE, E. A., N. A. KENT, S. J. DOWELL, F. MORINO, L. E. BIRD et al., 1993 The centromere and promoter factor, 1, CPF1, of Saccharomyces cerevisiae modulates gene activity through a family of factors including SPT21, RPD1 (SIN3), RPD3 and CCR4. Mol. Gen. Genet. 240: 374-386.
36. MOQTADERI, Z., Y. BAI, D. POON, P. A. WEIL and K. STRUHL, 1996 TBP-associated factors are not generally required for transciptional activation in yeast. Nature 383: 188-191.
37. OBERHOLZER, U., and M. A. COLLART, 1998 Characterization of NOT5 that encodes a new component of the Not protein complex. Gene 207: 61-69.
38. RANALLO, R. T., K. STRUHL, and L. A. STARGELL, 1999 A TATA-binding protein mutant defective for TFIID complex formation in vivo. Mol. Cell. Biol. 19: 3951-3957.
39. SAKAI, A., T. CHIBAZAKURA, Y. SHIMIZU and F. HISHINUMA, 1992 Molecular analysis of POP2 gene, a gene required for glucose-dere-pression of gene expression in Saccharomyces cerevisiae. Nucleic Acids Res. 20: 6227-6233.
40. SCHILD, D., 1995 Suppression of a new allele of the yeast RAD52 gene by overexpression of RAD51, mutations in srs2 and ccr4, or mating-type heterozygosity. Genetics 140: 115-127.
41. STRUHL, K., and R. W. DAVIS, 1977 Production of a functional eukaryotic enzyme in Escherichia coli: cloning and expression of the yeast structural gene for imidazole-glycerolphosphate dehydratase (his3). Proc. Natl. Acad. Sci. USA 74: 5255-5259.
42. TABTIANG, R. K., and I. HERSKOWITZ, 1998 Nuclear proteins Nut1p and Nut2p cooperate to negatively regulate a Swi4p-dependent lacZ reporter gene in Saccharomyces cerevisiae. Mol. Cell. Biol. 18: 4707-4718.
43. WINSTON, F., and M. CARLSON, 1992 Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection. Trends Genet. 8: 387-391.