16S to 23S rRNA spacer fragment length polymorphism of Salmonella enterica at subspecies and serotype levels

Journal of Applied Microbiology

Volumn 89, Issue 1, 2000, Pages 130-136

  Christensen, H ^a   Moller P L ^a   Vogensen, F K ^a   Olsen, J E ^a  

^a UNIVERSITY OF COPENHAGEN   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

DNA SEQUENCES; POLYMERASE CHAIN REACTION; RNA; SALMONELLA;

ARIZONA; CONDITION; FRAGMENT LENGTHS; INTERNAL TRANSCRIBED SPACERS; LENGTH POLYMORPHISM; PCR AMPLIFICATION; POLYACRYLAMIDE GEL ELECTROPHORESIS; RRNA GENES; SALMONELLA ENTERICA; SEROTYPES;

ELECTROPHORESIS;

SPACER DNA;

AGAR GEL ELECTROPHORESIS; ARTICLE; DENATURATION; DNA SEQUENCE; DNA STRAND; ELECTROPHORESIS; GENE EXPRESSION; OPERON; POLYMERASE CHAIN REACTION; SALMONELLA ENTERICA; SEROTYPING;

SALMONELLA CHOLERAESUIS; SALMONELLA ENTERICA;

EID: 0033862344     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2672.2000.01095.x     Document Type: Article

References (27)

1. Aabo, S., Thomas, A., Hall, M.L.M., Smith, H.R. and Olsen, J.E. (1992) Evaluation of a Salmonella-specific DNA probe by colony hybridization using non-isotopic and isotopic labeling. APMIS 100, 623-628.
2. Beltran, P., Musser, J.M. and Helmuth, R. et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relationships among strains of serotypes S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport, and S. typhimurium. Proceedings of the National Academy of Science, USA 85, 7753-7775.
3. Christensen, H., Jørgensen, K. and Olsen, J.E. (1999) Differentiation of Campylobacter coli and C. jejuni by length and DNA sequence of the 16S-23S rRNA internal spacer region. Microbiology 145, 99-105.
4. Christensen, H., Nordentoft, S. and Olsen, J.E. (1998) Phylogenetic relationships of Salmonella based on rRNA sequences. International Journal of Systematic Bacteriology 48, 605-610.
5. Daffonchio, D., Borin, S., Frova, G., Manachini, P.L. and Sorlini, C. (1998) PCR fingerprinting of whole genomes: the spacers between the 16S and 23S rRNA genes and of intergenic tRNA gene regions reveal a different intraspecific genomic variability of Bacillus cereus and Bacillus licheniformis. International Journal of Systematic Bacteriology 48, 107-116.
6. Gürtler, V. and Mayall, B.C. (1999) rDNA spacer rearrangements and concerted evolution. Microbiology 145, 2-3.
7. Gürtler, V. and Stanisich, V.A. (1996) New approaches to typing and identification of bacteria using the 16S-23S-rDNA spacer region. Microbiology 142, 3-16.
8. Hookey, J.V., Birtles, R.J. and Saunders, N.A. (1995) Intergenic 16S rRNA gene (rDNA) -23S rDNA sequence length polymorphisms in members of the family Legionellaceae. Journal of Clinical Microbiology 33, 2377-2381.
9. Jensen, M.A. and Hubner, R.J. (1996) Use of homoduplex ribosomal DNA spacer amplification products and heteroduplex cross-hybridization products in the identification of Salmonella serotypes. Applied and Environmental Microbiology 62, 2741-2746.
10. Jensen, M.A., Webster, J.A. and Straus, N. (1993) Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Applied and Environmental Microbiology 59, 935-942.
11. Lagatolla, C., Dolzani, L., Tonin, E., Lavenia, A.-M., Michele, M.D., Tommasini, T. and Monti-Bragadin, C. (1996) PCR ribotyping for characterizing Salmonella isolates of different serotypes. Journal of Clinical Microbiology 34, 2440-2443.
12. Lan, R. and Reeves, P.R. (1998) Recombination between rRNA operons created most of the ribotype vatiation observed in the seventh pandemic clone of Vibrio cholerae. Microbiology 144, 1213-1221.
13. Lane, D. (1991) 16S/23S gene sequencing. In Nucleic Acid Techniques in Bacterial Systematics ed. Stackebrandt, E. and Goodfellow, M. pp. 115-147. New York, NY: John Wiley and Sons.
14. Luz, S.P., Rodriguez-Valera, F., Lan, R. and Reeves, P.R. (1998) Variation of the ribosomal operon 16S-23S gene spacer region in representatives of Salmonella enterica subspecies. Journal of Bacteriology 180, 2144-2151.
15. Mendoza, M., Meugnier, H., Bes, M., Etienne, J. and Franey, J. (1998) Identification of Staphylococcus species by 16S-23S rDNA intergenic spacer PCR analysis. International Journal of Systematic Bacteriology 48, 1049-1055.
16. Nastasi, A. and Mammina, C. (1995) Epidemiological evaluation by PCR ribotyping of sporadic and outbreak-associatied strains of Salmonella enterica serotype Typhimurium. Research in Microbiology 146, 99-106.
17. Olsen, J.E. and Skov, M. (1994) Genomic lineage of Salmonella enterica serotype Dublin. Veterinary Microbiology 40, 271-282.
18. Olsen, J.E., Skov, M.N., Angen, Ø., Threlfall, E.J. and Bisgaard, M. (1997) Genomic relationships between selected phage types of Salmonella enterica subsp. enterica serotype Typhimurium defined by ribotyping, IS200 typing and PFGE. Microbiology 143, 1471-1479.
19. Olsen, J.E., Skov, M.N., Threlfall, E.J. and Brown, D.J. (1994) Clonal lines of Salmonella enterica serotype Enteritidis documented by IS200-, ribo-, pulsed-field gel electrophoresis and RFLP typing. Journal of Medical Microbiology 40, 15-22.
20. Popoff, M.Y. and Le Minor, L. (1997) Antigenic Formulas of the Salmonella Serotypes. WHO Collaborating Centre for Reference and Research on Salmonella. Paris: Institut Pasteur.
21. Riflard, S., Presti, F.L., Normand, P., Forey, F., Reyrolle, M., Etienne, J. and Vendenesch, F. (1998) Species identification of Legionella via intergenic 16S-23S ribosomal spacer PCR analysis. Internal Journal of Systematic Bacteriology 48, 723-730.
22. Rönner, S.G.E. and Stackebrandt, E. (1994) Development of 23S rDNA-oligonucleotide probes for the identification of Salmonella species. Systematic and Applied Microbiology 17, 257-264.
23. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989). Molecular Cloning. A Laboratory Manual 2nd edn. New York, NY: Cold Spring Harbor Laboratory Press.
24. Sanderson, K., Hessel, A. and Rudd, K.E. (1995) Genetic Map of Salmonella typhimurium, Edition VIII. Microbiological Reviews 59, 241-303.
25. Selander, R.K., Li, J. and Nelson, K. (1996) Evolutionary genetics of Salmonella enterica. In Escherichia coli and Salmonella. Cellular and Molecular Biology 2nd edn. ed. Neidhardt, F.C. pp. 2691-2707. Washington D.C.: American Society for Microbiology.
26. Vaneechoutte, M., Boerlin, P., Tichy, H.-V., Bannerman, E., Jäger, B. and Bille, J. (1998) Comparison of PCR-based DNA fingerprinting techniques for the identification of Listeria species and their use for atypical Listeria isolates. International Journal of Systematic Bacteriology 48, 127-139.
27. Vogel, B.F., Jørgensen, K., Christensen, H., Olsen, J.E. and Gram, L. (1997) Differentiation of Shewanella putrefaciens and Shewanella alga using whole-cell protein profiles, ribotyping, phenotypic characterization and 16S rRNA gene sequence analysis. Applied and Environmental Microbiology 63, 2189-2199.