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Volumn 286, Issue 4, 1999, Pages 1033-1043

E. coli rpsO mRNA decay: RNase E processing at the beginning of the coding sequence stimulates poly(A)-dependent degradation of the mRNA

Author keywords

3' 5' exoribonucleases; mRNA polyadenylation; mRNA stability; Poly(A)polymerase I; RNase E

Indexed keywords

EXONUCLEASE; MESSENGER RNA; POLYADENYLATED RNA; POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE; RIBONUCLEASE;

EID: 0344389019     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1999.2547     Document Type: Article
Times cited : (42)

References (47)
  • 1
    • 0024095739 scopus 로고
    • Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutant of Escherichia coli K 12
    • Arraiano M. C., Yancey S. D., Kushner S. R. Stabilization of discrete mRNA breakdown products in ams pnp rnb multiple mutant of Escherichia coli K 12. J. Bacteriol. 170:1988;4625-4633.
    • (1988) J. Bacteriol. , vol.170 , pp. 4625-4633
    • Arraiano, M.C.1    Yancey, S.D.2    Kushner, S.R.3
  • 2
    • 0026008229 scopus 로고
    • The ams. (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene ofEscherichia coli
    • Babitzke P., Kushner S. R. The ams. (altered mRNA stability) protein and ribonuclease E are encoded by the same structural gene ofEscherichia coli. Proc. Natl Acad. Sci. USA. 88:1991;1-5.
    • (1991) Proc. Natl Acad. Sci. USA , vol.88 , pp. 1-5
    • Babitzke, P.1    Kushner, S.R.2
  • 4
    • 0002860014 scopus 로고
    • MRNA degradation in prokaryotic cells: An overview
    • J. G. Belasco, & G. Brawerman. New York: Academic Press Inc.
    • Belasco J. G. mRNA degradation in prokaryotic cells: an overview. Belasco J. G., Brawerman G. Control of Messenger RNA Stability. 1993;3-12 Academic Press Inc. New York.
    • (1993) Control of Messenger RNA Stability , pp. 3-12
    • Belasco, J.G.1
  • 5
    • 0030779484 scopus 로고    scopus 로고
    • Polyphosphate kinase is a component of the Escherichia coli RNA degradosome
    • Blum E., Py B., Carpousis A. J., Higgins C. F. Polyphosphate kinase is a component of the Escherichia coli RNA degradosome. Mol. Microbiol. 26:1997;387-398.
    • (1997) Mol. Microbiol. , vol.26 , pp. 387-398
    • Blum, E.1    Py, B.2    Carpousis, A.J.3    Higgins, C.F.4
  • 6
    • 0029961542 scopus 로고    scopus 로고
    • Polynucleotide phosphorylase is required for the rapid degradation of the RNase E processed rpsO mRNA ofEscherichia coli devoid of its 3′ hairpin
    • Braun F., Hajnsdorf E., Régnier P. Polynucleotide phosphorylase is required for the rapid degradation of the RNase E processed rpsO mRNA ofEscherichia coli devoid of its 3′ hairpin. Mol. Microbiol. 19:1996;997-1005.
    • (1996) Mol. Microbiol. , vol.19 , pp. 997-1005
    • Braun, F.1    Hajnsdorf, E.2    Régnier, P.3
  • 7
    • 0032541436 scopus 로고    scopus 로고
    • Ribosomes inhibit an RNase E cleavage which induces the decay of rpsO mRNA of Escherichia coli
    • Braun F., Le Derout J., Régnier P. Ribosomes inhibit an RNase E cleavage which induces the decay of rpsO mRNA of Escherichia coli. EMBO J. 17:1998;4790-4797.
    • (1998) EMBO J. , vol.17 , pp. 4790-4797
    • Braun, F.1    Le, D.J.2    Régnier, P.3
  • 8
    • 0022993310 scopus 로고
    • Specific endonucleolytic cleavage sites for decay of E. coli mRNA
    • Cannistraro V. J., Subbarao M. N., Kennell D. Specific endonucleolytic cleavage sites for decay of E. coli mRNA. J. Mol. Biol. 192:1986;257-274.
    • (1986) J. Mol. Biol. , vol.192 , pp. 257-274
    • Cannistraro, V.J.1    Subbarao, M.N.2    Kennell, D.3
  • 9
    • 0028269435 scopus 로고
    • Co-purification of E. coli RNase E and PNPase: Evidence for a specific association between two enzymes important in RNA processing and degradation
    • Carpousis A. J., Van Houwe G., Ehretsmann C., Krisch H. M. Co-purification of E. coli RNase E and PNPase: evidence for a specific association between two enzymes important in RNA processing and degradation. Cell. 76:1994;889-900.
    • (1994) Cell , vol.76 , pp. 889-900
    • Carpousis, A.J.1    Van Houwe, G.2    Ehretsmann, C.3    Krisch, H.M.4
  • 10
    • 0029945427 scopus 로고    scopus 로고
    • Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3′-exonucleases dependent on oligoadenylation and RNA secondary structure
    • Coburn G. A., Mackie G. A. Differential sensitivities of portions of the mRNA for ribosomal protein S20 to 3′-exonucleases dependent on oligoadenylation and RNA secondary structure. J. Biol. Chem. 271:1996;15776-15781.
    • (1996) J. Biol. Chem. , vol.271 , pp. 15776-15781
    • Coburn, G.A.1    Mackie, G.A.2
  • 11
    • 0032569032 scopus 로고    scopus 로고
    • Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes
    • Coburn A. G., Mackie G. A. Reconstitution of the degradation of the mRNA for ribosomal protein S20 with purified enzymes. J. Mol. Biol. 279:1998;1061-1074.
    • (1998) J. Mol. Biol. , vol.279 , pp. 1061-1074
    • Coburn, A.G.1    Mackie, G.A.2
  • 12
    • 0028923019 scopus 로고
    • Surprises at the 3′ end of prokaryotic RNA
    • Cohen S. N. Surprises at the 3′ end of prokaryotic RNA. Cell. 80:1995;829-832.
    • (1995) Cell , vol.80 , pp. 829-832
    • Cohen, S.N.1
  • 13
    • 0023942305 scopus 로고
    • The metabolic role of RNases
    • Deutscher M. P. The metabolic role of RNases. Trends Biochem. Sci. 13:1988;136-139.
    • (1988) Trends Biochem. Sci. , vol.13 , pp. 136-139
    • Deutscher, M.P.1
  • 14
    • 0003395950 scopus 로고
    • Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12
    • Donovan W. P., Kushner S. R. Polynucleotide phosphorylase and ribonuclease II are required for cell viability and mRNA turnover in Escherichia coli K-12. Proc. Natl Acad. Sci. USA. 83:1986;120-124.
    • (1986) Proc. Natl Acad. Sci. USA , vol.83 , pp. 120-124
    • Donovan, W.P.1    Kushner, S.R.2
  • 15
    • 0025312772 scopus 로고
    • The ompA 5′ untranslated RNA segment functions in E. coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to transcriptional efficiency
    • Emory S. A., Belasco J. G. The ompA 5′ untranslated RNA segment functions in E. coli as a growth-rate-regulated mRNA stabilizer whose activity is unrelated to transcriptional efficiency. J. Bacteriol. 172:1990;4472-4481.
    • (1990) J. Bacteriol. , vol.172 , pp. 4472-4481
    • Emory, S.A.1    Belasco, J.G.2
  • 16
    • 0028310432 scopus 로고
    • Nucleolytic inactivation and degradation of the RNase III processed pnp message encoding polynucleotide phosphorylase of Escherichia coli
    • Hajnsdorf E., Carpousis A. J., Régnier P. Nucleolytic inactivation and degradation of the RNase III processed pnp message encoding polynucleotide phosphorylase of Escherichia coli. J. Mol. Biol. 239:1994a;439-454.
    • (1994) J. Mol. Biol. , vol.239 , pp. 439-454
    • Hajnsdorf, E.1    Carpousis, A.J.2    Régnier, P.3
  • 17
    • 0028235826 scopus 로고
    • Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcript of Escherichia coli: Stabilizing function and evidence for efficient degradation in an ams-pnp-rnb mutant
    • Hajnsdorf E., Steier O., Coscoy L., Teysset L., Régnier P. Roles of RNase E, RNase II and PNPase in the degradation of the rpsO transcript of Escherichia coli: Stabilizing function and evidence for efficient degradation in an ams-pnp-rnb mutant. EMBO J. 13:1994b;3368-3377.
    • (1994) EMBO J. , vol.13 , pp. 3368-3377
    • Hajnsdorf, E.1    Steier, O.2    Coscoy, L.3    Teysset, L.4    Régnier, P.5
  • 19
    • 0029825005 scopus 로고    scopus 로고
    • Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript
    • Hajnsdorf E., Braun F., Haugel-Nielsen J., Le Derout J., Régnier P. Multiple degradation pathways of the rpsO mRNA of Escherichia coli. RNase E interacts with the 5′ and 3′ extremities of the primary transcript. Biochimie. 78:1996;416-424.
    • (1996) Biochimie , vol.78 , pp. 416-424
    • Hajnsdorf, E.1    Braun, F.2    Haugel-Nielsen, J.3    Le, D.J.4    Régnier, P.5
  • 20
    • 0029891493 scopus 로고    scopus 로고
    • The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation
    • Haugel-Nielsen J., Hajnsdorf E., Régnier P. The rpsO mRNA of Escherichia coli is polyadenylated at multiple sites resulting from endonucleolytic processing and exonucleolytic degradation. EMBO J. 15:1996;3144-3152.
    • (1996) EMBO J. , vol.15 , pp. 3144-3152
    • Haugel-Nielsen, J.1    Hajnsdorf, E.2    Régnier, P.3
  • 21
    • 0002404647 scopus 로고
    • The role of 3′ end in mRNA stability and decay
    • J. G. Belasco, & G. Brawerman. New York: Academic PressInc.
    • Higgins C. F., Causton H. C., Dance G. S. C., Mudd E. A. The role of 3′ end in mRNA stability and decay. Belasco J. G., Brawerman G. Control of Messenger RNA Stability. 1993;13-30 Academic PressInc. New York.
    • (1993) Control of Messenger RNA Stability , pp. 13-30
    • Higgins, C.F.1    Causton, H.C.2    Dance, G.S.C.3    Mudd, E.A.4
  • 22
    • 0031952026 scopus 로고    scopus 로고
    • Poly(A) and poly(U) specific RNA 3′ tail shortening by E. coli ribonuclease E
    • Huang H., Liao J., Cohen S. N. Poly(A) and poly(U) specific RNA 3′ tail shortening by E. coli ribonuclease E. Nature. 391:1998;99-102.
    • (1998) Nature , vol.391 , pp. 99-102
    • Huang, H.1    Liao, J.2    Cohen, S.N.3
  • 23
    • 0029026714 scopus 로고
    • The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation
    • Iost I., Dreyfus M. The stability of Escherichia coli lacZ mRNA depends upon the simultaneity of its synthesis and translation. EMBO J. 14:1995;3252-3261.
    • (1995) EMBO J. , vol.14 , pp. 3252-3261
    • Iost, I.1    Dreyfus, M.2
  • 24
    • 0021759989 scopus 로고
    • Some simple computational methods to improve the folding of large RNAs
    • Jacobson A. B., Good L., Simonetti J., Zuker M. Some simple computational methods to improve the folding of large RNAs. Nucl. Acids Res. 12:1984;45-52.
    • (1984) Nucl. Acids Res. , vol.12 , pp. 45-52
    • Jacobson, A.B.1    Good, L.2    Simonetti, J.3    Zuker, M.4
  • 25
    • 0030024281 scopus 로고    scopus 로고
    • Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA
    • Keiler K. C., Waller P. R. H., Sauer R. T. Role of a peptide tagging system in degradation of proteins synthesized from damaged messenger RNA. Science. 271:1996;990-993.
    • (1996) Science , vol.271 , pp. 990-993
    • Keiler, K.C.1    Waller, P.R.H.2    Sauer, R.T.3
  • 26
    • 0024720429 scopus 로고
    • Stabilization of the 3′ one-third of E. coli ribosomal protein S20 mRNA in mutants lacking polynucleotide phosphorylase
    • Mackie G. A. Stabilization of the 3′ one-third of E. coli ribosomal protein S20 mRNA in mutants lacking polynucleotide phosphorylase. J. Bacteriol. 171:1989;4112-4120.
    • (1989) J. Bacteriol. , vol.171 , pp. 4112-4120
    • Mackie, G.A.1
  • 27
    • 0025796969 scopus 로고
    • Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro
    • Mackie G. A. Specific endonucleolytic cleavage of the mRNA for ribosomal protein S20 of Escherichia coli requires the product of the ams gene in vivo and in vitro. J. Bacteriol. 173:1991;2488-2497.
    • (1991) J. Bacteriol. , vol.173 , pp. 2488-2497
    • Mackie, G.A.1
  • 28
    • 0032531768 scopus 로고    scopus 로고
    • Ribonuclease E is a 5′-end-dependent endonuclease
    • Mackie G. A. Ribonuclease E is a 5′-end-dependent endonuclease. Nature. 395:1998;720-723.
    • (1998) Nature , vol.395 , pp. 720-723
    • Mackie, G.A.1
  • 29
    • 0024296550 scopus 로고
    • Site specific endonucleolytic cleavages and the regulation of stability of E. coli ompA mRNA
    • Melefors O., von Gabain A. Site specific endonucleolytic cleavages and the regulation of stability of E. coli ompA mRNA. Cell. 52:1988;893-901.
    • (1988) Cell , vol.52 , pp. 893-901
    • Melefors, O.1    Von Gabain, A.2
  • 30
    • 0029976430 scopus 로고    scopus 로고
    • Proteins associated with RNase E in a multicomponent ribonucleolytic complex
    • Miczak A., Kaberdin V. R., Wei C.-L., Lin-Chao S. Proteins associated with RNase E in a multicomponent ribonucleolytic complex. Proc. Natl Acad. Sci. USA. 93:1996;3865-3869.
    • (1996) Proc. Natl Acad. Sci. USA , vol.93 , pp. 3865-3869
    • Miczak, A.1    Kaberdin, V.R.2    Wei, C.-L.3    Lin-Chao, S.4
  • 31
    • 0006101303 scopus 로고    scopus 로고
    • Sok antisense RNA from plasmid R1 is functionally inactivated by RNase E and polyadenylated by poly(A) polymerase I
    • Mikkelsen N. D., Gerdes K. Sok antisense RNA from plasmid R1 is functionally inactivated by RNase E and polyadenylated by poly(A) polymerase I. Mol. Microbiol. 26:1997;311-320.
    • (1997) Mol. Microbiol. , vol.26 , pp. 311-320
    • Mikkelsen, N.D.1    Gerdes, K.2
  • 32
    • 0025361818 scopus 로고
    • E. coli RNase E has a role in the decay of bacteriophage T4 mRNA
    • Mudd E. A., Carpousis A. J., Krisch H. M. E. coli RNase E has a role in the decay of bacteriophage T4 mRNA. Genes Dev. 4:1990a;873-881.
    • (1990) Genes Dev. , vol.4 , pp. 873-881
    • Mudd, E.A.1    Carpousis, A.J.2    Krisch, H.M.3
  • 33
    • 0025688893 scopus 로고
    • RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: Evidence thatrne and ams are the same genetic locus
    • Mudd E. A., Krisch H. M., Higgins C. F. RNase E, an endoribonuclease, has a general role in the chemical decay of E. coli mRNA: evidence thatrne and ams are the same genetic locus. Mol. Microbiol. 1990b;2127-2135.
    • (1990) Mol. Microbiol. , pp. 2127-2135
    • Mudd, E.A.1    Krisch, H.M.2    Higgins, C.F.3
  • 35
    • 0018791193 scopus 로고
    • A conditional lethal mutation in an E. coli strain with longer chemical lifetime of messenger RNA
    • Ono M., Kuwano M. A conditional lethal mutation in an E. coli strain with longer chemical lifetime of messenger RNA. J. Mol. Biol. 129:1979;343-357.
    • (1979) J. Mol. Biol. , vol.129 , pp. 343-357
    • Ono, M.1    Kuwano, M.2
  • 36
    • 0003011967 scopus 로고
    • Translation and mRNA stability in bacteria: A complex relationship
    • J. G. Belasco, & G. Brawerman. New York: Academic Press
    • Petersen C. Translation and mRNA stability in bacteria: a complex relationship. Belasco J. G., Brawerman G. Control of Messenger RNA Stability. 1993;117-147 Academic Press, New York.
    • (1993) Control of Messenger RNA Stability , pp. 117-147
    • Petersen, C.1
  • 37
  • 38
    • 0021112086 scopus 로고
    • Organization of the Escherichia coli chromosome around the genes for translation initiation factor IF2 (inf2) and a transcription terminator factor (nusA)
    • Plumbridge J. A., Springer M. Organization of the Escherichia coli chromosome around the genes for translation initiation factor IF2 (inf2) and a transcription terminator factor (nusA). J. Mol. Biol. 167:1983;227-243.
    • (1983) J. Mol. Biol. , vol.167 , pp. 227-243
    • Plumbridge, J.A.1    Springer, M.2
  • 39
    • 0023370347 scopus 로고
    • The first step in the functional inactivation of the E. coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end
    • Portier C., Dondon L., Grunberg-Manago M., Régnier P. The first step in the functional inactivation of the E. coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end. EMBO J. 6:1987;2165-2170.
    • (1987) EMBO J. , vol.6 , pp. 2165-2170
    • Portier, C.1    Dondon, L.2    Grunberg-Manago, M.3    Régnier, P.4
  • 40
    • 0029922992 scopus 로고    scopus 로고
    • A DEAD-box RNA helicase in the Escherichia coli RNA degradosome
    • Py B., Higgins C. F., Krisch H. M., Carpousis A. J. A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature. 381:1996;169-172.
    • (1996) Nature , vol.381 , pp. 169-172
    • Py, B.1    Higgins, C.F.2    Krisch, H.M.3    Carpousis, A.J.4
  • 41
    • 0024851443 scopus 로고
    • Cleavage by RNase III in the transcripts of the metY-nusA-infB operon of E. coli releases the tRNA and initiates the decay of the downstream mRNA
    • Régnier P., Grunberg-Manago M. Cleavage by RNase III in the transcripts of the metY-nusA-infB operon of E. coli releases the tRNA and initiates the decay of the downstream mRNA. J. Mol. Biol. 210:1989;293-302.
    • (1989) J. Mol. Biol. , vol.210 , pp. 293-302
    • Régnier, P.1    Grunberg-Manago, M.2
  • 42
    • 0025649204 scopus 로고
    • RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression
    • Régnier P., Grunberg-Manago M. RNase III cleavages in non-coding leaders of Escherichia coli transcripts control mRNA stability and genetic expression. Biochimie. 72:1990;825-834.
    • (1990) Biochimie , vol.72 , pp. 825-834
    • Régnier, P.1    Grunberg-Manago, M.2
  • 43
    • 0025973574 scopus 로고
    • Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure
    • Régnier P., Hajnsdorf E. Decay of mRNA encoding ribosomal protein S15 of Escherichia coli is initiated by an RNase E-dependent endonucleolytic cleavage that removes the 3′ stabilizing stem and loop structure. J. Mol. Biol. 217:1991;283-292.
    • (1991) J. Mol. Biol. , vol.217 , pp. 283-292
    • Régnier, P.1    Hajnsdorf, E.2
  • 44
    • 0023041808 scopus 로고
    • Initiation, attenuation and RNase III processing of transcripts from the E. coli operon encoding ribosomal protein S15 and polynucleotide phosphorylase
    • Régnier P., Portier C. Initiation, attenuation and RNase III processing of transcripts from the E. coli operon encoding ribosomal protein S15 and polynucleotide phosphorylase. J. Mol. Biol. 187:1986;23-32.
    • (1986) J. Mol. Biol. , vol.187 , pp. 23-32
    • Régnier, P.1    Portier, C.2
  • 45
    • 0030660144 scopus 로고    scopus 로고
    • Regulation of plasmid R1 replication: PcnB and RNase E expedite the decay of the antisense RNA, copA
    • Söderbom F., Binnie U., Masters M., Wagner E. G. H. Regulation of plasmid R1 replication: PcnB and RNase E expedite the decay of the antisense RNA, copA. Mol. Microbiol. 26:1997;493-504.
    • (1997) Mol. Microbiol. , vol.26 , pp. 493-504
    • Söderbom, F.1    Binnie, U.2    Masters, M.3    Wagner, E.G.H.4
  • 46
    • 0028945837 scopus 로고
    • RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation
    • Xu F., Cohen S. RNA degradation in Escherichia coli regulated by 3′ adenylation and 5′ phosphorylation. Nature. 374:1995;180-183.
    • (1995) Nature , vol.374 , pp. 180-183
    • Xu, F.1    Cohen, S.2
  • 47
    • 0027267498 scopus 로고
    • The Escherichia coli pcnB gene promotes adenylation of antisense RNA I of ColE1-type plasmidsinvivo and degradation of RNA I decay intermediate
    • Xu F., Lin-Chao S., Cohen S. N. The Escherichia coli pcnB gene promotes adenylation of antisense RNA I of ColE1-type plasmidsinvivo and degradation of RNA I decay intermediate. Proc. Natl Acad. Sci. USA. 90:1993;6756-6760.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 6756-6760
    • Xu, F.1    Lin-Chao, S.2    Cohen, S.N.3


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