Determination of substrate specificity for peptide deformylase through the screening of a combinatorial peptide library

Biochemistry

Volumn 38, Issue 2, 1999, Pages 643-650

  Hu, Yun Jin ^a   Wei, Yaoming ^a   Zhou, Ying ^a   Rajagopalan, P T R ^a   Pei, Dehua ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETIC ACID DERIVATIVE; ARYLFORMAMIDASE; ENZYME INHIBITOR; FERRIC ION; METALLOPROTEINASE; PEPTIDE LIBRARY;

AMINO ACID SEQUENCE; ARTICLE; CONSENSUS SEQUENCE; ENZYME KINETICS; ENZYME SPECIFICITY; ESCHERICHIA COLI; EUBACTERIUM; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL;

AMIDOHYDROLASES; AMINOPEPTIDASES; CONSENSUS SEQUENCE; ENZYME ACTIVATION; ESTERASES; KINETICS; OLIGOPEPTIDES; PEPTIDE LIBRARY; POLYSTYRENES; REPRODUCIBILITY OF RESULTS; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SUBSTRATE SPECIFICITY;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0033547751     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9820412     Document Type: Article

References (32)

1. Meinnel, T., Mechulam, Y., and Blanquet. S. (1993) Biochimie 75, 1061-1075.
2. Adams, J. M., and Capecchi, M. ( 1966) Proc. Natl. Acad. Sci. U.S.A. 55, 147-155.
3. Webster, R. E., Engelhardt, D. L., and Zinder, N. D. (1966) Proc. Natl. Acad. Sci. U.S.A. 55, 155-161.
4. Adams, J. M. (1968) J. Mol. Biol. 33, 571-589.
5. Takeda, M., and Webster, R. E. (1968) Proc. Natl. Acad. Sci. U.S.A. 60, 1487-1494.
6. Livingston, D. M., and Leder, P. (1968) Biochemistry 8, 435-443.
7. Ball, L. A., and Kaesberg, P. (1973) J. Mol. Biol. 79, 531-537.
8. Mazel, D., Pochet, S., and Marliere, P. (1994) EMBO J. 13, 914-923.
9. Hauschild-Rogat, P. (1968) Mol. Gen. Genet. 102, 95-101.
10. Marasco, W. A., Phan, S. H., Krutzsch, H., Showell, H. J., Feltner, D. E., Nairn, R., Becker, E. L., and Ward, P. A. (1984) J. Biol. Chem. 259, 5430-5439.
11. Milligan, D. L., and Koshland, D. E., Jr. (1990) J. Biol. Chem. 265, 4455-4460.
12. Warren, W. C., Bentle, K. A., Schlittler, M. R., Schwane, A. C., O'Neil, J. P., and Bogosian, G. (1996) Gene 174, 235-238.
13. Bogosian, G., Violand, B. N., Dorward-King, E. J., Workman, W. E., Jung, P. E., and Kane, J. F. (1989) J. Biol. Chem. 264, 531-539.
14. Hoffert, S. P. (1998) Scientist 12 (No. 8), 1-6.
15. Meinnel, T., and Blanquet, S. (1995) J. Bacteriol. 177, 1883-1887.
16. Rajagopalan, P. T. R., Datta, A., and Pei, D. (1997) Biochemistry 36, 13910-13918.
17. Rajagopalan, P. T. R., Yu, X. C., and Pei, D. (1997) J. Am. Chem. Soc. 119, 12418-12419.
18. Rajagopalan, P. T. R., and Pei, D. (1998) J. Biol. Chem. 273, 22305-22310.
19. Bodanszky, M. (1993) Principles of Peptide Synthesis, 2nd ed., Springer-Verlag, Germany.
20. Yu, Z., and Chu, Y.-H. (1997) Bioorg. Med. Chem. Lett. 7, 95-98.
21. Lam, K. S., Salmon, S. E., Hersh, E. M., Hruby, V. J., Kazmierski, W. M., and Knapp, R. J. (1991) Nature 354, 82-84.
22. Furka, A., Sebestyen, F., Asgedom, M., and Dibo, G. (1991) Int. J. Pept. Protein Res. 37, 487-493.
23. Wei, Y., and Pel, D. (1997) Anal. Biochem 250, 29-34.
24. Youngquist, R. S., Fuentes, G. R., Lacey, M. P., and Keough, T. (1995) J. Am. Chem. Soc. 117, 3900-3906.
25. Vagner, J., Barany, G., Lam, K. S., Krchnak, V., Sepetov, N. F., Ostrem, J. A., Strop, P., and Lebl, M. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 8194-8199.
26. Cheung, Y. W., Abell, C., and Balasubramanian, S. (1997) J. Am. Chem. Soc. 119, 9568-9569.
27. Meinnel, T., Blanquet, S., and Dardel, F. (1996) J. Mol. Biol. 262, 375-386.
28. Chan, M. K., Gong, W., Rajagopalan, P. T. R., Bing, H., Tsai, C. M., and Pei, D. (1997) Biochemistry 36, 13904-13909.
29. Becker, A., Schlichting, I., Kabsch, W., Schultz, S., and Wagner, A. F. V. (1998) J. Biol. Chem. 273, 11413-11416.
30. Hao, B., Gong, W., Rajagopalan, P. T. R., Zhou, Y., Pei, D., and Chan, M. K. (1998) Biochemistry (submitted for publication).
31. White, D., and Coville, N. J. (1994) Adv. Organomet. Chem. 36, 95-158.
32. Datta, D., and Majumdar, D. (1991) J. Phys. Org. Chem. 4, 611-617.