Modulating dipoles for structure-function correlations in the gramicidin A channel

Biochemistry

Volumn 38, Issue 29, 1999, Pages 9185-9197

  Cotten, Myriam ^a,b   Tian, Changlin ^a,b   Busath, David D ^c   Shirts, Randall B ^c   Cross, T A ^a,b  

^a FLORIDA STATE UNIVERSITY   (United States)

^b FLORIDA STATE UNIVERSITY   (United States)

^c BRIGHAM YOUNG UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DEUTERIUM; GRAMICIDIN A; INDOLE DERIVATIVE; ION CHANNEL; POTASSIUM CHANNEL; PROTON; TRYPTOPHAN;

ARTICLE; CHEMICAL INTERACTION; CONFORMATION; DIPOLE; FLUORINATION; ION CONDUCTANCE; LIPID BILAYER; NONHUMAN; PRIORITY JOURNAL; STREPTOMYCES; STRUCTURE ACTIVITY RELATION;

BACILLUS; BACTERIAL PROTEINS; DEUTERIUM; DIMYRISTOYLPHOSPHATIDYLCHOLINE; ELECTROSTATICS; GRAMICIDIN; INDOLES; ION CHANNELS; LIPID BILAYERS; MATHEMATICAL COMPUTING; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN CONFORMATION; PROTONS; STRUCTURE-ACTIVITY RELATIONSHIP; TRYPTOPHAN;

EID: 0033587644     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi982981m     Document Type: Article

References (52)

1. Doyle, D. A., Morais Cabral, J. M., Pfuentzer, R. A., Kuo, A., Gulbis, J. M., Cohen, S. L., Chait, B. T., and MacKinnon, R. (1998) Science 280, 69-77.
2. Hu, W., and Cross, T. A. (1995) Biochemistry 34, 14147-14155.
3. Cowley, E. G., and Partington, J. R. (1936) J. Chem. Soc., 47-50.
4. Janetzky, E. F. J., and Lebret, M. C. (1944) Rec. Trav. Chim. Pays-Bas 63, 123-126.
5. Weiler-Feilchenfeld, H., Pullman, A., Berthod, H., and Geissner-Prettre, C. (1970) J. Mol. Struct. 6, 297-304.
6. Lumbroso, H., and Pappalardo, G. (1961) Bull. Soc. Chim. Fr., 1131-1135.
7. Antolic, S., Kojicprodic, B., Tomic, S., Nigovic, B., Magnus, V., and Cohen, J. D. (1996) Acta Crystallogr. B 52, 651-661.
8. Pa'rka'nyi, C., Oruganti, S. R., Abdelhamid, A. O., and Szentpa'ly, L. V. (1986) THEOCHEM 135, 105-116.
9. Alagona, G., Ghio, C., and Monti, S. (1998) THEOCHEM 433, 203-216.
10. Tomic', S., van Duijneveldt, F. B., Kroon-Batenburg, L. M., and Kojic'-Prodic', B. (1995) Croat. Chem. Acta 68, 205-214.
11. Westbrook, J. D., Levy, R. M., and Krogh-Jesperson, K. (1992) J. Comput. Chem. 8, 979-989.
12. Simonson, T., Wong, C. F., and Brünger, A. T. (1997) J. Phys. Chem. A 101, 1935-1945.
13. Levine, I. N. (1991) Quantum Chemistry, 4th ed., p 476, Prentice Hall, Englewood Cliffs, NJ.
14. Reed, A. E., Curtiss, F., and Weinhold, F. (1988) Chem. Rev. 88, 889-926.
15. Breneman, C. M., and Wiberg, K. B. (1990) J. Comput. Chem. 11, 361-373.
16. Bayly, C. I., Cieplak, P., Wornell, W. D., and Kollman, P. A. (1993) J. Phys. Chem. 97, 10269-10280.
17. Gastieger, J., and Marsili, M. (1980) Tetrahedron 36, 3219-3228.
18. Rappe, A. K., and Goddard, W. A. (1991) J. Phys. Chem. 95, 3358-3363.
19. Ketchem, R., Hu, W., and Cross, T. (1993) Science 261, 1457-1460.
20. Ketchem, R. R., Roux, B., and Cross, T. A. (1997) Structure 5, 1655-1669.
21. Arseniev, A. S., Lomize, A. L., Barsukov, I. L., and Bystrov, V. F. (1985) FEBS Lett. 186, 168-174.
22. Lomize, A. L., Orekhov, V. Y., and Arseniev, A. S. (1992) Bioorg. Khim. 18, 182-200.
23. Hu, W., Lee, K.-C., and Cross, T. A. (1993) Biochemistry 32, 7035-7047.
24. Arumugam, S., Pascal, S., North, C. L., Hu, W., Lee, K. C., Cotten, M., Ketchem, R. R., Xu, F., Brenneman, M., Kovacs, F., Tian, F., Wang, A., Huo, S., and Cross, T. A. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 5872-5876.
25. O'Connell, A. M., Koeppe, R. E., II, and Andersen, O. S. (1990) Science 250, 1256-1259.
26. Durkin, J. T., Providence, L. L., Koeppe, R. E., II, and Andersen, O. S. (1992) Biophys. J. 62, 145-159.
27. Van Mau, N., Bonnet, B., Benayad, A., and Heitz, F. (1994) Eur. Biophys. J. 22, 447-452.
28. Salom, D., Bañó, M. C., Braco, L., and Abad, C. (1995) Biochem. Biophys. Res. Commun. 209, 466-473.
29. Seoh, S. A., and Busath, D. (1995) Biophys. J. 68, 2271-2279.
30. Cotten, M., Xu, F., and Cross, T. A. (1997) Biophys. J. 73, 614-623.
31. Salom, D., Perez-Paya, E., Pascal, J., and Abad, C. (1998) Biochemistry 37, 14279-14291.
32. Cotten, M., Fu, R., and Cross, T. A (1999) Biophys. J. 76, 1179-1189.
33. Killian, J. A. (1992) Biochim. Biophys. Acta 1113, 391-425.
34. Becker, M. D., Greathouse, D. V., Koeppe, R. E., II, and Andersen, O. S. (1991) Biochemistry 30, 8830-8839.
35. Busath, D., Thulin, C. D., Hendershot, R. W., Revell Phillips, L., Maughan, P., Cole, C. D., Bingham, N. C., Morrison, S., Baird, L. C., Hendershot, R. J., Cotten, M., and Cross, T. A. (1998) Biophys. J. 75, 2830-2844.
36. Koeppe, R. E., II, and Andersen, O. S. (1996) Annu. Rev. Biophys. Biomol. Struct. 25, 231-258.
37. Hu, W., Lazlo, N. D., and Cross, T. A. (1995) Biochemistry 34, 14138-14146.
38. Andersen, O. S., Greathouse, D. V., Providence, L. L., Becker, M. D., and Koeppe, R. E., II (1998) J. Am. Chem. Soc. 120, 5142-5146.
39. Fields, G. B., Fields, C. G., Petefish, J., Van Wart, H. E., and Cross, T. A. (1988) Proc. Natl. Acad. Sci. U.S.A. 85, 1384-1388.
40. Fields, C. G., Fields, G. B., Noble, R. L., and Cross, T. A. (1989) Int. J. Pept. Protein Res. 33, 298-303.
41. Subramanian, E., and Sahayamary, J. J. (1989) Int. J. Pept. Protein Res. 34, 134-138.
42. Koeppe, R. E., II, Killian, J. A., and Greathouse, D. V. (1994) Biophys. J. 66, 14-24.
43. Dorigo, A. E., Anderson, D. G., and Busath, D. D. (1999) Biophys. J. 76, 1897-1908.
44. Hinton, J. F., Wahburn-McCain, A. M., Snow, A., and Douglas, J. (1997) J. Magn. Reson. 124, 132-139.
45. Michel, H., and Deisenhofer, J. (1990) Curr. Top. Membr. Transp. 36, 53-69.
46. Steffen, M. A., Lao, K., and Boxer, S. G. (1994) Science 264, 810-816.
47. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., and Yoshikawa, S. (1996) Science 272, 1136-1144.
48. Yau, W.-M., Wimley, W. C., Gawrisch, K., and White, S. H. (1998) Biochemistry 37, 14713-14718.
49. Persson, S., Killian, J. A., and Lindblom, G. (1998) Biophys. J. 75, 1365-1371.
50. Sancho, M., and Martinez, G. (1991) Biophys. J. 60, 81-88.
51. Jordan, P. C. (1990) Biophys. J. 58, 1133-1140.
52. Tian, F., and Cross, T. A. (1998) J. Mol. Biol. 285, 1993-2003.