Cation transport: An example of structural based selectivity

Journal of Molecular Biology

Volumn 285, Issue 5, 1999, Pages 1993-2003

  Tian, F ^a   Cross, T A ^a  

^a FLORIDA STATE UNIVERSITY   (United States)

Author keywords

Channel selectivity; Gramicidin A; Ion peptide interaction; Membrane protein; Orientational constraints

Indexed keywords

CATION; GRAMICIDIN A; ION CHANNEL; LIPID;

ARTICLE; ENTROPY; ION TRANSPORT; PRIORITY JOURNAL;

EID: 0033525064     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2434     Document Type: Article

References (54)

1. Andersen O. S. Gramicidin channels. Annu. Rev. Physiol. 46:1984;531-548.
2. +by gramicidin A. Biophys. J. 56:1989;171-182.
3. Badger J., Kapulsky A., Gursky O., Bhyravbhatla B., Caspar L. D. Structure and selectivity of a monovalent cation binding site in cubic insulin crystals. Biophys. J. 66:1994;286-292.
4. Becker M. D., Koeppe R. E. II, Andersen O. S. Amino acid substitutions and ion channel function: model-dependent conclusions. Biophys. J. 62:1992;25-27.
5. ++gas phase ion chemistry. J. Chem. Phys. 92:1990;5900-5906.
6. Brünger A. T. X-PLOR Manual Version 3.1. 1993;Yale University, New Haven.
7. Busath D. D. The use of physical methods in determining gramicidin channel structure and function. Annu. Rev. Physiol. 55:1993;473-501.
8. Carrell C. J., Carrell H. L., Erlebacher J., Glusker J. P. Structural aspects of metal ion-carboxylate interactions. J. Am. Chem. Soc. 110:1988;8651-8656.
9. Christensen J. J., Eatough D. J., Izatt R. M. Handbook of Metal Ligand Heats and Related Thermodynamic Quantities. 1975;Marcel Dekker Inc. New York.
10. Cotton F. A., Wilkinson G. Advanced Inorganic Chemistry. 1980;Wiley.
11. Cox B. G., Schneider H. Coordination and Transport Properties of Macrocyclic Compounds in Solution. Studies in Physical and Theoretical Chemistry. 1992;Elsevier, Amsterdam.
12. Cross T. A. Structural biology of peptides and proteins in synthetic membrane environments by solid-state NMR spectroscopy. Annu. Rep. NMR Spectros. 29:1994;124-158.
13. Cross T. A., Opella S. J. Solid-state NMR structural studies of peptides and proteins in membrane. Curr. Opin. Struct. Biol. 4:1994;574-581.
14. Diebler H., Eigen M., Ilgenfritz G., Maab G., Winkler R. Kinetics and mechanism of reactions of main group metal ions with biological carriers. Pure Appl. Chem. 20:1969;93-115.
15. Dorman V., Partenskii M. B., Jordan P. C. A semi-microscopic Monte Carlo study of permeation energetics in gramicidin-like channel: the origin of cation selectivity. Biophys. J. 70:1996;121-134.
16. +conduction and selectivity. Science. 280:1998;69-77.
17. n. J. Phys. Chem. 74:1970;1466-1474.
18. Eisenman G. Cation selective glass electrodes and their mode of operation. Biophys. J. 2:1962;259-323.
19. 1]gramicidin A. Proc. Natl Acad. Sci. USA. 85:1988;1384-1388.
20. Golovanov A. P., Barsukov I. L., Arseniev A. S., Bystrov V. F., Sukhanov S. V., Barsukov L. I. The divalent cation-binding sites of gramicidin A transmembrane ion-channel. Biopolymers. 31:1991;425-434.
21. Hille B. Ionic Channels of Excitable Membranes. 1992;Sinauer Associates, Sunderland.
22. Hinton J. F., Whaley W. L., Shungu D., Koppe R. E., Millett F. S. Equilibrium binding constants for the group I metal cations with gramicidin A determined by competition studies and Tl-205 nuclear magnetic resonance spectroscopy. Biophys. J. 50:1986;539-544.
23. Hinton J. F., Fernandez J. Q., Shungu D., Millett F. S. Thermodynamic parameters for the binding of divalent cations to gramicidins A incorporated into a lipid environment by Tl-205 nuclear magnetic resonance. Biophys. J. 55:1989;327-330.
24. 23Na-NMR. Biochim. Biophys. Acta. 1238:1995;1-11.
25. Jordan P. C. Ion-water and ion-polypeptide correlations in a gramicidin-like channel. A molecular dynamics study. Biophys. J. 58:1990;1133-1156.
26. Ketchem R. R., Roux B., Cross T. A. High-resolution polypeptide structure in a lamellar phase lipid environment from solid state NMR derived orientational constraints. Structure. 5:1997;1655-1669.
27. Kim Y., Valentine K., Opella S. J., Schendel S. L., Cramer W. A. Solid-state NMR-studies of the membrane-bound closed state of the Colicin E1 channel domain in lipid bilayers. Protein Sci. 7:1998;342-348.
28. Lazo N. D., Hu W., Lee K. C., Cross T. A. Rapidly-frozen polypeptide samples for characterization of high definition dynamics by solid-state NMR spectroscopy. Biochem. Biophys. Res. Commun. 197:1993;904-909.
29. 15N NMR characterization of polypeptide backbone librations. J. Magn. Reson. ser. B. 107:1995;43-50.
30. Lehn J. M. Design of organic complexing agents: strategies towards properties. Struct. Bonding (Berlin). 1973;1-70.
31. Lehn J. M., Sauvage J. P. [2]-Cryptates: stability and selectivity of alkali and alkaline-earth macrobicyclic complexes. J. Am. Chem. Soc. 97:1975;6700-6707.
32. Mackay D. H., Berens P. H., Wilson K. R., Hagler A. T. Structure and dynamics of ion transport through gramicidin A. Biophys. J. 56:1984;229-248.
33. 15N-labeled membrane protein in phospholipid bilayers. Proc. Natl Acad. Sci. USA. 94:1997;1739-1744.
34. Myers V. B., Haydon D. A. Ion transfer across lipid membranes in the presence of gramicidin II. The ion selectivity. Biochim. Biophys. Acta. 274:1972;313-322.
35. North C. L., Cross T. A. Correlations between function and dynamics: time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone. Biochemistry. 34:1995;5883-5895.
36. Olah G. A., Huang H. W., Liu W. H., Wu Y. L. Location of ion-binding sites in the grainicidin channel by X-ray diffraction. J. Mol. Biol. 218:1991;847-858.
37. Opella S. J. NMR and membrane proteins. Nature Struct. Biol. 4:1997;845-848.
38. Roux B. Valence selectivity of the gramicidin channel: a molecular dynamics free energy perturbation study. Biophys. J. 71:1996;3177-3185.
39. Roux B., Karplus M. Ion transport in a model gramicidin channel: structure and thermodynamics. Biophys. J. 59:1991;961-981.
40. Roux B., Karplus M. Ion transport in the gramicidin channel: free energy of the solvated right-handed dimer in a model membrane. J. Am. Chem. Soc. 115:1993;3250-3262.
41. Schirmer T., Keller T. A., Wang Y. F., Rosenbusch J. P. Structural basis for sugar translocation through maltoporin channels at 3.1 Å resolution. Science. 267:1995;512-514.
42. Separovic F., Gehrmann J., Milne T., Cornell B. A., Lin S. Y., Smith R. Sodium ion binding in the gramicidin A channel: solid-state NMR studies of the tryptophan residues. Biophys. J. 67:1994;1495-1500.
43. Simon W., Morf W. E., Meier P. C. Specificity for alkali and alkaline earth cations of synthetic and natural organic complexing agents in membranes. Struct. Bonding (Berlin). 16:1973;113-160.
44. 13C-NMR studies of the effects of sodium ions on the gramicidin A ion channel. Biochim. Biophys. Acta. 1026:1990;161-166.
45. Sung S., Jordan P. C. Why is gramicidin valence selective? Biophys. J. 51:1987;661-672.
46. 15N CSA in a membrane bound polypeptide. J. Magn. Reson. 1999.
47. Tian F., Lee K.-C., Hu W., Cross T. A. Monovalent cations transport: lack of structural deformation upon cation binding. Biochemistry. 35:1996;11959-11966.
48. Urry D. W. NMR relaxation studies of alkali metal ion interaction with the gramicidin A transmembrane channel. Bull. Magn. Reson. 9:1987;109-131.
49. Urry D. W., Prasad K. U., Trapane T. L. Location of monovalent cation binding sites in the gramicidin channel. Proc. Natl Acad. Sci. USA. 79:1982;390-394.
50. Urry D. W., Trapane T. L., Venkatachalam C. M., Prasad K. U. Characterization of lithium binding to the malonyl gramicidin A transmembrane channel: Li-7 NMR study. J. Phys. Chem. 87:1983;2918-2923.
51. Venkatatachalam C. M., Urry D. W. Theoretical conformational analysis of the gramicidin A transmembrane channel. II. Energetics of helical librational states of the channel. J. Comput. Chem. 5:1984;64-71.
52. Vogtle F., Weber E. Crown ethers-complexes and selectivity. Patai P. The Chemistry of Functional Groups. 1980;59-156 John Wiley & Sons, Chichester.
53. 13C solid state nuclear magnetic resonance. J. Am. Chem. Soc. 113:1991;9675-9676.
54. Winkler R. Kinetics and mechanism of alkali ion complex formation in solution. Struct. Bonding (Berlin). 10:1972;1-24.