-
1
-
-
0000217485
-
Self-consistent parameterization of biomolecules for molecular modeling and condensed phase simulations
-
Mackerell, A.D., Jr., et al., & Karplus, M. (1992). Self-consistent parameterization of biomolecules for molecular modeling and condensed phase simulations. Biophys. J. 61, A 143.
-
(1992)
Biophys. J.
, vol.61
-
-
Mackerell Jr., A.D.1
Karplus, M.2
-
2
-
-
0024281641
-
Three-dimensional structure at 0.86 Å of the uncomplexed form of the transmembrane ion channel peptide gramicidin A
-
Langs, D.A. (1988). Three-dimensional structure at 0.86 Å of the uncomplexed form of the transmembrane ion channel peptide gramicidin A. Science 241, 188-191.
-
(1988)
Science
, vol.241
, pp. 188-191
-
-
Langs, D.A.1
-
3
-
-
0026079920
-
Monoclinic uncomplexed double-stranded, antiparallel, left-handed beta 5.6-helix structure of gramicidin A
-
Langs, D.A., Smith, G.D., Courseille, C., Precigoux, G. & Hospital, M. (1991). Monoclinic uncomplexed double-stranded, antiparallel, left-handed beta 5.6-helix structure of gramicidin A. Proc. Natl. Acad. Sci. USA 88, 5345-5349.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 5345-5349
-
-
Langs, D.A.1
Smith, G.D.2
Courseille, C.3
Precigoux, G.4
Hospital, M.5
-
4
-
-
0024281633
-
The gramicidin pore: Crystal structure of a cesium complex
-
Wallace, B.A. & Ravikumar, K. (1988). The gramicidin pore: crystal structure of a cesium complex. Science 241, 182-187.
-
(1988)
Science
, vol.241
, pp. 182-187
-
-
Wallace, B.A.1
Ravikumar, K.2
-
5
-
-
0026480686
-
Structure of an isolated gramicidin A double helical species by high resolution nuclear magnetic resonance
-
Pascal, S.M. & Cross, T.A. (1992). Structure of an isolated gramicidin A double helical species by high resolution nuclear magnetic resonance. J. Mol. Biol. 226, 1101-1109.
-
(1992)
J. Mol. Biol.
, vol.226
, pp. 1101-1109
-
-
Pascal, S.M.1
Cross, T.A.2
-
6
-
-
0027666089
-
High-resolution structure and dynamic implications for a double-helical gramicidin A conformer
-
Pascal, S.M. & Cross, T.A. (1993). High-resolution structure and dynamic implications for a double-helical gramicidin A conformer. J. Biomol. NMR 3, 495-513.
-
(1993)
J. Biomol. NMR
, vol.3
, pp. 495-513
-
-
Pascal, S.M.1
Cross, T.A.2
-
7
-
-
0001798288
-
2D NMR of single and double stranded helices of gramicidin A in micelles and solutions
-
Bystrov, V.F., Arseniev, A.S., Barsukov, I.L. & Lomize, A.L. (1987). 2D NMR of single and double stranded helices of gramicidin A in micelles and solutions. Bull. Magn. Reson. 8, 84-94.
-
(1987)
Bull. Magn. Reson.
, vol.8
, pp. 84-94
-
-
Bystrov, V.F.1
Arseniev, A.S.2
Barsukov, I.L.3
Lomize, A.L.4
-
8
-
-
0003059397
-
NMR solution conformation of gramicidin A double helix
-
Arseniev, A.S., Bystrov, V.F., Ivnov, V.T. & Ovchinnikov, Y.A. (1984). NMR solution conformation of gramicidin A double helix. FEBS Lett. 165, 51-56.
-
(1984)
FEBS Lett.
, vol.165
, pp. 51-56
-
-
Arseniev, A.S.1
Bystrov, V.F.2
Ivnov, V.T.3
Ovchinnikov, Y.A.4
-
9
-
-
0026813599
-
Refinement of the spatial structure of the gramicidin A ion channel
-
Lomize, A.L., Orekhov, V. & Arseniev, A.S. (1992). Refinement of the spatial structure of the gramicidin A ion channel. Bioorg. Khim. 18, 182-200.
-
(1992)
Bioorg. Khim.
, vol.18
, pp. 182-200
-
-
Lomize, A.L.1
Orekhov, V.2
Arseniev, A.S.3
-
10
-
-
77956819892
-
Structural biology of peptides and proteins in synthetic membrane environments by solid-state NMR spectroscopy
-
Cross, T.A. (1994). Structural biology of peptides and proteins in synthetic membrane environments by solid-state NMR spectroscopy. Annu. Rep. NMR Spectroscopy 29, 124-158.
-
(1994)
Annu. Rep. NMR Spectroscopy
, vol.29
, pp. 124-158
-
-
Cross, T.A.1
-
11
-
-
0028025665
-
Solid-state NMR structural studies of peptides and proteins in membranes
-
Cross, T.A. & Opella, S.J. (1994). Solid-state NMR structural studies of peptides and proteins in membranes. Curr. Opin. Struct. Biol. 4, 574-581.
-
(1994)
Curr. Opin. Struct. Biol.
, vol.4
, pp. 574-581
-
-
Cross, T.A.1
Opella, S.J.2
-
12
-
-
0000481074
-
NMR order parameter analysis of a peptide plane aligned in a lyotropic liquid crystal
-
Separovic, F., Pax, R. & Cornell, B.A. (1993). NMR order parameter analysis of a peptide plane aligned in a lyotropic liquid crystal. Mol. Phys. 78, 357-369.
-
(1993)
Mol. Phys.
, vol.78
, pp. 357-369
-
-
Separovic, F.1
Pax, R.2
Cornell, B.A.3
-
13
-
-
0028045061
-
Orientation of the tryptophan 9 and 11 side chains of the gramicidin channel based on deuterium nuclear magnetic resonance spectroscopy
-
Koeppe, II R.E., Killian, J.A., Greathouse, D.V. (1994). Orientation of the tryptophan 9 and 11 side chains of the gramicidin channel based on deuterium nuclear magnetic resonance spectroscopy. Biophys. J. 66, 14-24.
-
(1994)
Biophys. J.
, vol.66
, pp. 14-24
-
-
Koeppe II, R.E.1
Killian, J.A.2
Greathouse, D.V.3
-
14
-
-
0027219740
-
15N]Ala3-gramicidin A in multilamellar dimyristoylphosphatidylcholine dispersions
-
15N]Ala3-gramicidin A in multilamellar dimyristoylphosphatidylcholine dispersions. Biochemistry 32, 7593-7604.
-
(1993)
Biochemistry
, vol.32
, pp. 7593-7604
-
-
Hing, A.W.1
Schaefer, J.2
-
16
-
-
0027360175
-
High-resolution conformation of gramicidin A in a lipid-bilayer by solid-state NMR
-
Ketchem, R.R., Hu, W. & Cross, T.A. (1993). High-resolution conformation of gramicidin A in a lipid-bilayer by solid-state NMR. Science 261, 1457-1460.
-
(1993)
Science
, vol.261
, pp. 1457-1460
-
-
Ketchem, R.R.1
Hu, W.2
Cross, T.A.3
-
17
-
-
0002398076
-
Computational refinement through solid state NMR and energy constraints of a membrane bound polypeptide
-
(Merz, K.M., Jr. & Roux, B., eds), Birkhauser, Boston, USA
-
Ketchem, R.R., Roux, B. & Cross, T.A. (1966). Computational refinement through solid state NMR and energy constraints of a membrane bound polypeptide. In Biological Membranes: a Molecular Perspective From Computation and Experiment. (Merz, K.M., Jr. & Roux, B., eds), pp. 299-322, Birkhauser, Boston, USA.
-
(1966)
Biological Membranes: A Molecular Perspective from Computation and Experiment
, pp. 299-322
-
-
Ketchem, R.R.1
Roux, B.2
Cross, T.A.3
-
18
-
-
0025000888
-
Ion-water and ion-polypeptide correlations in a gramicidin-like channel: A molecular dynamics study
-
Jordan, P.C. (1990). Ion-water and ion-polypeptide correlations in a gramicidin-like channel: a molecular dynamics study. Biophys. J. 58, 1133-1156.
-
(1990)
Biophys. J.
, vol.58
, pp. 1133-1156
-
-
Jordan, P.C.1
-
19
-
-
0027232024
-
Ion transport in the gramicidin channel: Free energy of the solvated right-handed dimer in a model membrane
-
Roux, B. & Karplus, M. (1993). Ion transport in the gramicidin channel: free energy of the solvated right-handed dimer in a model membrane. J. Am. Chem. Soc. 115, 3250-3260.
-
(1993)
J. Am. Chem. Soc.
, vol.115
, pp. 3250-3260
-
-
Roux, B.1
Karplus, M.2
-
20
-
-
0028321565
-
Molecular dynamics simulations of the gramicidin channel
-
Roux, B. & Karplus, M. (1994). Molecular dynamics simulations of the gramicidin channel. Annu. Rev. Biomol. Struct. Dyn. 23, 731-761.
-
(1994)
Annu. Rev. Biomol. Struct. Dyn.
, vol.23
, pp. 731-761
-
-
Roux, B.1
Karplus, M.2
-
21
-
-
0021472805
-
Structure and dynamics of ion transport through gramicidin A
-
Mackay, D.H., Berens, P.H., Wilson, K.R. & Hagler, A.T. (1984). Structure and dynamics of ion transport through gramicidin A. Biophys. J. 56, 229-248.
-
(1984)
Biophys. J.
, vol.56
, pp. 229-248
-
-
Mackay, D.H.1
Berens, P.H.2
Wilson, K.R.3
Hagler, A.T.4
-
22
-
-
0028901238
-
Sodium in gramicidin: An example of a permion
-
Elber, R., Chen, D.P., Rojewska, D. & Eisenberg, R. (1995). Sodium in gramicidin: an example of a permion. Biophys. J. 68, 906-924.
-
(1995)
Biophys. J.
, vol.68
, pp. 906-924
-
-
Elber, R.1
Chen, D.P.2
Rojewska, D.3
Eisenberg, R.4
-
23
-
-
0024375490
-
Water and polypeptide conformations in the gramicidin channel: A molecular dynamics study
-
Chiu, S.-W., Subramanian, S., Jakobsson, E. & McCammon, J.A. (1989). Water and polypeptide conformations in the gramicidin channel: a molecular dynamics study. Biophys. J. 56, 253-261.
-
(1989)
Biophys. J.
, vol.56
, pp. 253-261
-
-
Chiu, S.-W.1
Subramanian, S.2
Jakobsson, E.3
McCammon, J.A.4
-
24
-
-
0028020035
-
Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer
-
Woolf, T.B. & Roux, B. (1994). Molecular dynamics simulation of the gramicidin channel in a phospholipid bilayer. Proc. Natl. Acad. Sci. USA 91, 11631-11635.
-
(1994)
Proc. Natl. Acad. Sci. USA
, vol.91
, pp. 11631-11635
-
-
Woolf, T.B.1
Roux, B.2
-
25
-
-
0030038849
-
Structure, energetics and dynamics of lipid-protein interactions: A molecular dynamics study of the gramicidin A channel in a dmpc bilayer
-
Woolf, T.B. & Roux, B. (1996). Structure, energetics and dynamics of lipid-protein interactions: a molecular dynamics study of the gramicidin A channel in a dmpc bilayer. Proteins 24, 92.
-
(1996)
Proteins
, vol.24
, pp. 92
-
-
Woolf, T.B.1
Roux, B.2
-
26
-
-
0026471029
-
Molecular determinants of channel function
-
Anderson, O.S. & Koeppe, R.E., II (1992). Molecular determinants of channel function. Physiol. Rev. 72, S89-S158.
-
(1992)
Physiol. Rev.
, vol.72
-
-
Anderson, O.S.1
Koeppe II, R.E.2
-
27
-
-
0025768749
-
How can the aromatic sidechains modulate the conductance of the gramicidin channel? A new approach using non-coded amino acids
-
Daumas, P., et al., Pullman, A. (1991). How can the aromatic sidechains modulate the conductance of the gramicidin channel? A new approach using non-coded amino acids. Int. J. Pept. Protein Res. 38, 218-228.
-
(1991)
Int. J. Pept. Protein Res.
, vol.38
, pp. 218-228
-
-
Daumas, P.1
Pullman, A.2
-
28
-
-
0027533833
-
The use of physical methods in determining gramicidin channel structure and function
-
Busath, D.D. (1993). The use of physical methods in determining gramicidin channel structure and function. Annu. Rev. Physiol. 55, 473-501.
-
(1993)
Annu. Rev. Physiol.
, vol.55
, pp. 473-501
-
-
Busath, D.D.1
-
29
-
-
0025721931
-
Amino acid sequence modulation of gramicidin channel function: Effects of tryptophan-to-phenylalanine substitutions on single-channel conductance and duration
-
Becker, M.D., Greathouse, D.V., Koeppe, R.E., II. & Andersen, O.S. (1991). Amino acid sequence modulation of gramicidin channel function: effects of tryptophan-to-phenylalanine substitutions on single-channel conductance and duration. Biochemistry 30, 8830-8839.
-
(1991)
Biochemistry
, vol.30
, pp. 8830-8839
-
-
Becker, M.D.1
Greathouse, D.V.2
Koeppe II, R.E.3
Andersen, O.S.4
-
30
-
-
0022534474
-
Analysis of the ion transfer through the channel of 9, 11, 13, 15-phenylalanine gramicidin A
-
Heitz, F., Gavach, C., Spach, G. & Trudelle, Y. (1986). Analysis of the ion transfer through the channel of 9, 11, 13, 15-phenylalanine gramicidin A. Biophys. Chem. 24, 143-148.
-
(1986)
Biophys. Chem.
, vol.24
, pp. 143-148
-
-
Heitz, F.1
Gavach, C.2
Spach, G.3
Trudelle, Y.4
-
31
-
-
0028931417
-
Voltage-dependent gating of an asymmetric gramicidin channel
-
Oiki, S., Koeppe, R.E., II. & Andersen, O.S. (1995). Voltage-dependent gating of an asymmetric gramicidin channel. Proc. Natl. Acad. Sci. USA 92, 2121-2125.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 2121-2125
-
-
Oiki, S.1
Koeppe II, R.E.2
Andersen, O.S.3
-
32
-
-
45149145322
-
Rotational-echo double-resonance NMR
-
Gullion, T. & Schaefer, J. (1989). Rotational-echo double-resonance NMR. J. Magn. Reson. 81, 196-200.
-
(1989)
J. Magn. Reson.
, vol.81
, pp. 196-200
-
-
Gullion, T.1
Schaefer, J.2
-
34
-
-
0027517644
-
Magic angle sinning NMR methods for internuclear distance measurements
-
Smith, S.O. (1993). Magic angle sinning NMR methods for internuclear distance measurements. Curr. Opin. Struct. Biol. 3, 755-759.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 755-759
-
-
Smith, S.O.1
-
35
-
-
0002693985
-
Rotational resonance in solid-state NMR
-
Raleigh, D.P., Levitt, M.H. & Griffin, R.G. (1988). Rotational resonance in solid-state NMR. Chem. Phys. Lett. 146, 71-76.
-
(1988)
Chem. Phys. Lett.
, vol.146
, pp. 71-76
-
-
Raleigh, D.P.1
Levitt, M.H.2
Griffin, R.G.3
-
36
-
-
0030183359
-
Macromolecular structural elucidation with solid-state NMR-derived orientational constraints
-
Ketchem, R.R., Lee, K.-C., Huo, S. & Cross, T.A. (1996). Macromolecular structural elucidation with solid-state NMR-derived orientational constraints. J. Biomol. NMR 8, 1-14.
-
(1996)
J. Biomol. NMR
, vol.8
, pp. 1-14
-
-
Ketchem, R.R.1
Lee, K.-C.2
Huo, S.3
Cross, T.A.4
-
37
-
-
0030933015
-
Protein structural analysis from solid-state NMR derived orientational constraints
-
Quine, J.R., Brenneman, M. & Cross, T.A. (1997). Protein structural analysis from solid-state NMR derived orientational constraints. Biophys. J. 72, 2342-2348.
-
(1997)
Biophys. J.
, vol.72
, pp. 2342-2348
-
-
Quine, J.R.1
Brenneman, M.2
Cross, T.A.3
-
38
-
-
0025822318
-
Experimental determination of torsion angles in the polypeptide backbone of the gramicidin A channel by solid-state nuclear magnetic resonance
-
Teng, Q., Nichoson, L.K. & Cross, T.A. (1991). Experimental determination of torsion angles in the polypeptide backbone of the gramicidin A channel by solid-state nuclear magnetic resonance. J. Mol. Biol. 218, 607-619.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 607-619
-
-
Teng, Q.1
Nichoson, L.K.2
Cross, T.A.3
-
39
-
-
0028955318
-
Lipid-peptide interface: Valine conformation and dynamics in the gramicidin channel
-
Lee, K.-C., Huo, S. & Cross, T.A. (1995). Lipid-peptide interface: valine conformation and dynamics in the gramicidin channel. Biochemistry 34, 857-867.
-
(1995)
Biochemistry
, vol.34
, pp. 857-867
-
-
Lee, K.-C.1
Huo, S.2
Cross, T.A.3
-
40
-
-
0028882402
-
Tryptophan dynamics and structural refinement in a lipid bilayer environment: Solid-state NMR of the gramicidin channel
-
Hu, W., Lazo, N.D. & Cross, T.A. (1995). Tryptophan dynamics and structural refinement in a lipid bilayer environment: solid-state NMR of the gramicidin channel. Biochemistry 34, 14138-14146.
-
(1995)
Biochemistry
, vol.34
, pp. 14138-14146
-
-
Hu, W.1
Lazo, N.D.2
Cross, T.A.3
-
41
-
-
0028787147
-
Tryptophan hydrogen bonding and electric dipole moments: Functional roles in gramicidin channel and implications for membrane proteins
-
Hu, W. & Cross, T.A. (1995). Tryptophan hydrogen bonding and electric dipole moments: functional roles in gramicidin channel and implications for membrane proteins. Biochemistry 34, 14147-14155.
-
(1995)
Biochemistry
, vol.34
, pp. 14147-14155
-
-
Hu, W.1
Cross, T.A.2
-
42
-
-
0030827053
-
Water accessibility to the tryptophan indole N-H sites of gramicidin A transmembrane channel: Detection of positional shifts of tryptophan 11 and 13 along the channel axis upon cation binding
-
Maruyama, T. & Takeuchi, H. (1997). Water accessibility to the tryptophan indole N-H sites of gramicidin A transmembrane channel: detection of positional shifts of tryptophan 11 and 13 along the channel axis upon cation binding. Biochemistry 36, 10993-11001.
-
(1997)
Biochemistry
, vol.36
, pp. 10993-11001
-
-
Maruyama, T.1
Takeuchi, H.2
-
43
-
-
77952490184
-
Tertiary structure of proteins. I. Representation and computation of the conformations
-
Nishikawa, K., Ooi, T., Isogai, Y. & Saito, N. (1972). Tertiary structure of proteins. I. Representation and computation of the conformations. J. Phys. Soc. Jpn. 32, 1331-1337.
-
(1972)
J. Phys. Soc. Jpn.
, vol.32
, pp. 1331-1337
-
-
Nishikawa, K.1
Ooi, T.2
Isogai, Y.3
Saito, N.4
-
45
-
-
0347640048
-
High-resolution polypeptide structure and dynamics in anisotropic environments: The gramicidin channel
-
(Trewhella, J., Cross, T.A. & Unkefer, C.J., eds), Los Alamos National Lab, Los Alamos
-
Cross, T.A., et al., Huo, S. (1994). High-resolution polypeptide structure and dynamics in anisotropic environments: the gramicidin channel. In Stable Isotope Applications in Biomolecular Structure and Mechanisms. (Trewhella, J., Cross, T.A. & Unkefer, C.J., eds), pp. 59-71, Los Alamos National Lab, Los Alamos.
-
(1994)
Stable Isotope Applications in Biomolecular Structure and Mechanisms
, pp. 59-71
-
-
Cross, T.A.1
Huo, S.2
-
46
-
-
5744249209
-
Equation of state calculations by fast computing machines
-
Metropolis, N., Rosenbluth, A.W., Rosenbluth, M.N., Teller, A.H. & Teller, E. (1953). Equation of state calculations by fast computing machines. J. Phys. Chem. 21, 1087-1092.
-
(1953)
J. Phys. Chem.
, vol.21
, pp. 1087-1092
-
-
Metropolis, N.1
Rosenbluth, A.W.2
Rosenbluth, M.N.3
Teller, A.H.4
Teller, E.5
-
47
-
-
26444479778
-
Optimization by simulated annealing
-
Kirkpatrick, S., Gelatt, C.D., Jr. & Vecchi, M.P. (1983). Optimization by simulated annealing. Science 220, 671-680.
-
(1983)
Science
, vol.220
, pp. 671-680
-
-
Kirkpatrick, S.1
Gelatt Jr., C.D.2
Vecchi, M.P.3
-
48
-
-
0000243829
-
PROCHECK: A program to check the stereochemical quality of protein structures
-
Laskowski, R.A., MacArthur, M.W., Moss, D.S. & Thornton, J.M. (1993). PROCHECK: a program to check the stereochemical quality of protein structures. J. Appl. Cryst. 26, 283-291.
-
(1993)
J. Appl. Cryst.
, vol.26
, pp. 283-291
-
-
Laskowski, R.A.1
MacArthur, M.W.2
Moss, D.S.3
Thornton, J.M.4
-
49
-
-
79952608525
-
Accurate bond and angle parameters for X-ray protein structure refinement
-
Engh, R.A. & Huber, R. (1991). Accurate bond and angle parameters for X-ray protein structure refinement. Acta Cryst. A 47, 392-400.
-
(1991)
Acta Cryst. A
, vol.47
, pp. 392-400
-
-
Engh, R.A.1
Huber, R.2
-
51
-
-
0028890031
-
Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans
-
Iwata, S., Ostermeier, C., Ludwig, B. & Michel, H. (1995). Structure at 2.8 Å resolution of cytochrome c oxidase from Paracoccus denitrificans. Nature 376, 660-669.
-
(1995)
Nature
, vol.376
, pp. 660-669
-
-
Iwata, S.1
Ostermeier, C.2
Ludwig, B.3
Michel, H.4
-
52
-
-
0030009893
-
Three-dimensional structure of bovine cytochrome bc complex by electron cryomicroscopy and helical image reconstruction
-
Akiba, T., et al., & Matsubara, H. (1996). Three-dimensional structure of bovine cytochrome bc complex by electron cryomicroscopy and helical image reconstruction. Nat. Struct. Biol. 3, 553-561.
-
(1996)
Nat. Struct. Biol.
, vol.3
, pp. 553-561
-
-
Akiba, T.1
Matsubara, H.2
-
53
-
-
0028147508
-
Atomic model of plant light-harvesting complex by electron crystallography
-
Kuhlbrandt, W., Wang, D.N. & Fujiyoshi, Y. (1994). Atomic model of plant light-harvesting complex by electron crystallography. Nature 367, 614-621.
-
(1994)
Nature
, vol.367
, pp. 614-621
-
-
Kuhlbrandt, W.1
Wang, D.N.2
Fujiyoshi, Y.3
-
54
-
-
0030864048
-
X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases
-
Pebay-Peyroula, E., Rummel, G., Rosenbusch, J.P. & Landau, E.M. (1997). X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. Science 277, 1676-1681.
-
(1997)
Science
, vol.277
, pp. 1676-1681
-
-
Pebay-Peyroula, E.1
Rummel, G.2
Rosenbusch, J.P.3
Landau, E.M.4
-
55
-
-
0027503130
-
Orientational constraints as three-dimensional structural constraints from chemical shift anisotropy: The polypeptide backbone of gramicidin A in a lipid bilayer
-
Mai, W., Hu, W., Wang, C. & Cross, T.A. (1993). Orientational constraints as three-dimensional structural constraints from chemical shift anisotropy: the polypeptide backbone of gramicidin A in a lipid bilayer. Protein Sci. 2, 532-542.
-
(1993)
Protein Sci.
, vol.2
, pp. 532-542
-
-
Mai, W.1
Hu, W.2
Wang, C.3
Cross, T.A.4
-
56
-
-
0003528359
-
Structure and dynamics of a membrane bound polypeptide
-
Cross, T.A., Ketchem, R.R., Hu, W., Lee, K.-C., Lazo, N.D. & North, C.L. (1992). Structure and dynamics of a membrane bound polypeptide. Bull. Magn. Reson. 14, 96-101.
-
(1992)
Bull. Magn. Reson.
, vol.14
, pp. 96-101
-
-
Cross, T.A.1
Ketchem, R.R.2
Hu, W.3
Lee, K.-C.4
Lazo, N.D.5
North, C.L.6
-
57
-
-
0029283171
-
15N NMR characterization of polypeptide samples for characterization of high definition dynamics by solid-state NMR spectroscopy
-
15N NMR characterization of polypeptide samples for characterization of high definition dynamics by solid-state NMR spectroscopy. J. Magn. Reson. 107 B, 43-50.
-
(1995)
J. Magn. Reson.
, vol.107 B
, pp. 43-50
-
-
Lazo, N.D.1
Hu, W.2
Cross, T.A.3
-
58
-
-
15844412299
-
Conformational trapping in a membrane environment: A regulatory mechanism for protein activity?
-
Arumugam, S., et al., & Cross, T.A. (1996). Conformational trapping in a membrane environment: a regulatory mechanism for protein activity? Proc. Natl. Acad. Sci. USA 93, 5872-5876.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5872-5876
-
-
Arumugam, S.1
Cross, T.A.2
-
59
-
-
0030748570
-
Protein stability and conformational rearrangements in lipid bilayers: Linear gramicidin, a model system
-
Cotten, M., Xu, F. & Cross, T.A. (1997). Protein stability and conformational rearrangements in lipid bilayers: linear gramicidin, a model system. Biophys. J. 73, 614-623.
-
(1997)
Biophys. J.
, vol.73
, pp. 614-623
-
-
Cotten, M.1
Xu, F.2
Cross, T.A.3
-
60
-
-
0028916495
-
HPLC demonstration that an all Trp to Phe replacement in gramicidin A results in a conformational rearrangement from β-helical monomer to double-stranded dimer in model membranes
-
Salom, D., Bano, M.C., Braco, L. & Abad, C. (1995). HPLC demonstration that an all Trp to Phe replacement in gramicidin A results in a conformational rearrangement from β-helical monomer to double-stranded dimer in model membranes. Biochem. Biophys. Res. Commun. 209, 466-473.
-
(1995)
Biochem. Biophys. Res. Commun.
, vol.209
, pp. 466-473
-
-
Salom, D.1
Bano, M.C.2
Braco, L.3
Abad, C.4
-
61
-
-
0026502808
-
On the helix sense of gramicidin A single channels
-
Koeppe, R.E., II., et al., & Andersen, O.S. (1992). On the helix sense of gramicidin A single channels. Proteins 12, 49-62.
-
(1992)
Proteins
, vol.12
, pp. 49-62
-
-
Koeppe II, R.E.1
Andersen, O.S.2
-
62
-
-
33748583013
-
Ion transport in a gramicidin-like channel: Dynamics and mobility
-
Roux, B. & Karplus, M. (1991). Ion transport in a gramicidin-like channel: dynamics and mobility. J. Phys. Chem. 95, 4856-4868.
-
(1991)
J. Phys. Chem.
, vol.95
, pp. 4856-4868
-
-
Roux, B.1
Karplus, M.2
-
63
-
-
0029787815
-
Monovalent cation transport: Lack of structural deformation upon cation binding
-
Tian, F., Lee, K.-C., Hu, W. & Cross, T.A. (1996). Monovalent cation transport: lack of structural deformation upon cation binding. Biochemistry 35, 11959-11966.
-
(1996)
Biochemistry
, vol.35
, pp. 11959-11966
-
-
Tian, F.1
Lee, K.-C.2
Hu, W.3
Cross, T.A.4
-
64
-
-
0001641907
-
Gramicidin, tyrocidine and tyrothricin
-
Hotchkiss, R.D. (1944). Gramicidin, tyrocidine and tyrothricin. Adv. Enzymol. 4, 111-119.
-
(1944)
Adv. Enzymol.
, vol.4
, pp. 111-119
-
-
Hotchkiss, R.D.1
-
65
-
-
0014109846
-
Gramicidin, valinomycin and cation permeability of Streptococcus faecalis
-
Harold, F.M. & Baarda, J.R. (1967). Gramicidin, valinomycin and cation permeability of Streptococcus faecalis. J. Bact. 94, 53-60.
-
(1967)
J. Bact.
, vol.94
, pp. 53-60
-
-
Harold, F.M.1
Baarda, J.R.2
-
66
-
-
33845282559
-
Microscopic approaches to ion transport through transmembrane channels: The model system gramicidin
-
Jordan, P.C. (1987). Microscopic approaches to ion transport through transmembrane channels: the model system gramicidin. J. Phys. Chem. 91, 6582-6591.
-
(1987)
J. Phys. Chem.
, vol.91
, pp. 6582-6591
-
-
Jordan, P.C.1
-
67
-
-
0025882246
-
Ion transport in a model gramicidin channel: Structure and thermodynamics
-
Roux, B. & Karplus, M. (1991). Ion transport in a model gramicidin channel: structure and thermodynamics Biophys. J. 59, 961-981.
-
(1991)
Biophys. J.
, vol.59
, pp. 961-981
-
-
Roux, B.1
Karplus, M.2
-
68
-
-
0023863112
-
The normal modes of the gramicidin A dimer channel
-
Roux, B. & Karplus, M. (1988). The normal modes of the gramicidin A dimer channel. Biophys. J. 53, 297-309.
-
(1988)
Biophys. J.
, vol.53
, pp. 297-309
-
-
Roux, B.1
Karplus, M.2
-
69
-
-
0026747636
-
Gramicidin channel selectivity: Molecular mechanics calculations for formamidinium, guanidinium and acetamidinium
-
Turano, B., Pear, M. & Busath, D. (1992). Gramicidin channel selectivity: molecular mechanics calculations for formamidinium, guanidinium and acetamidinium. Biophys. J. 63, 152-161.
-
(1992)
Biophys. J.
, vol.63
, pp. 152-161
-
-
Turano, B.1
Pear, M.2
Busath, D.3
-
71
-
-
0025878348
-
Location of ion-binding sites in the gramicidin channel by X-ray diffraction
-
Olah, G.A., Huang, H.W., Liu, W. & Wu, Y. (1991). Location of ion-binding sites in the gramicidin channel by X-ray diffraction. J. Mol. Biol. 218, 847-858.
-
(1991)
J. Mol. Biol.
, vol.218
, pp. 847-858
-
-
Olah, G.A.1
Huang, H.W.2
Liu, W.3
Wu, Y.4
-
72
-
-
0030995981
-
The binding site in the gramicidin A channel: Comparison of molecular dynamics with solid-state NMR data
-
Woolf, T.B. & Roux, B. (1997). The binding site in the gramicidin A channel: comparison of molecular dynamics with solid-state NMR data. Biophys. J. 72, 1930-1945.
-
(1997)
Biophys. J.
, vol.72
, pp. 1930-1945
-
-
Woolf, T.B.1
Roux, B.2
-
73
-
-
0030300089
-
Hydrogen exchange in the lipid bilayer-bound gramicidin channel
-
Huo, S., Arumugam, S. & Cross, T.A. (1996). Hydrogen exchange in the lipid bilayer-bound gramicidin channel. Biophys. J. 7, 177-183.
-
(1996)
Biophys. J.
, vol.7
, pp. 177-183
-
-
Huo, S.1
Arumugam, S.2
Cross, T.A.3
-
74
-
-
0028774036
-
Structure and dynamics from solid state NMR spectroscopy
-
Ketchem, R.R., Hu, W., Tian, F. & Cross, T.A. (1994). Structure and dynamics from solid state NMR spectroscopy. Structure 2, 699-701.
-
(1994)
Structure
, vol.2
, pp. 699-701
-
-
Ketchem, R.R.1
Hu, W.2
Tian, F.3
Cross, T.A.4
-
75
-
-
0029024518
-
Correlations between function and dynamics: Time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone
-
North, C.L. & Cross, T.A. (1995). Correlations between function and dynamics: time scale coincidence for ion translocation and molecular dynamics in the gramicidin channel backbone. Biochemistry 34, 5883-5895.
-
(1995)
Biochemistry
, vol.34
, pp. 5883-5895
-
-
North, C.L.1
Cross, T.A.2
-
76
-
-
0026778201
-
Amino acid substitutions and ion channel function: Model-dependent conclusions
-
Becker, M.D., Koeppe, R.E., II & Andersen, O.S. (1992). Amino acid substitutions and ion channel function: model-dependent conclusions. Biophys. J. 62, 25-27.
-
(1992)
Biophys. J.
, vol.62
, pp. 25-27
-
-
Becker, M.D.1
Koeppe II, R.E.2
Andersen, O.S.3
-
77
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization and dynamics calculations
-
Brooks, B.R., Bruccoleri, R.E., Olafson, B.D., States, D.J., Swaminathan, S. & Karplus, M. (1983). CHARMM: a program for macromolecular energy, minimization and dynamics calculations. J. Comput. Chem. 4, 187-217.
-
(1983)
J. Comput. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
78
-
-
84985730475
-
Transformation of the φ-ψ plot for proteins to a new representation with local helicity and peptide torsion angles as variables
-
Peticolas, W.L. & Kurtz, B. (1980). Transformation of the φ-ψ plot for proteins to a new representation with local helicity and peptide torsion angles as variables. Biopolymers 19, 1153-1166.
-
(1980)
Biopolymers
, vol.19
, pp. 1153-1166
-
-
Peticolas, W.L.1
Kurtz, B.2
-
79
-
-
0029920419
-
Simulated annealing with restrained molecular dynamics using CONGEN: Energy refinement of the NMR solution structures of epidermal and type-α transforming growth factors
-
Tejero, R., Bassolino-Klimas, D., Bruccoleri, R.E. & Montelione, G.T. (1996). Simulated annealing with restrained molecular dynamics using CONGEN: energy refinement of the NMR solution structures of epidermal and type-α transforming growth factors. Protein Sci. 5, 578-592.
-
(1996)
Protein Sci.
, vol.5
, pp. 578-592
-
-
Tejero, R.1
Bassolino-Klimas, D.2
Bruccoleri, R.E.3
Montelione, G.T.4
-
81
-
-
0346155274
-
Determination of high-resolution NMR structures of proteins
-
(Clore, G.M. & Gronenborn, A.M., eds), CRC Press, Boca Raton, USA
-
Case, D.A. & Wright, P.E. (1993). Determination of high-resolution NMR structures of proteins. In NMR of Proteins. (Clore, G.M. & Gronenborn, A.M., eds), pp. 53-91, CRC Press, Boca Raton, USA.
-
(1993)
NMR of Proteins
, pp. 53-91
-
-
Case, D.A.1
Wright, P.E.2
-
82
-
-
0027999064
-
Solution structure of a low molecular weight protein tyrosine phosphatase
-
Logan, T.M., Zhou, M-M., Nettesheim, D.G., Meadows, R.P., Van Etten, R.L. & Fesik, S.W. (1994). Solution structure of a low molecular weight protein tyrosine phosphatase. Biochemistry 33, 11087-11096.
-
(1994)
Biochemistry
, vol.33
, pp. 11087-11096
-
-
Logan, T.M.1
Zhou, M.-M.2
Nettesheim, D.G.3
Meadows, R.P.4
Van Etten, R.L.5
Fesik, S.W.6
|