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Volumn 18, Issue 22, 1999, Pages 6481-6490

A factor related to pseudouridine synthases is required for chloroplast group II intron trans-splicing in Chlamydomonas reinhardtii

Author keywords

Chlamydomonas reinhardtii; Chloroplast; Group II intron; psaA; Trans splicing

Indexed keywords

CHAPERONE; MESSENGER RNA; PSEUDOURIDINE; RNA BINDING PROTEIN; SYNTHETASE;

EID: 0033571587     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1093/emboj/18.22.6481     Document Type: Article
Times cited : (92)

References (52)
  • 1
    • 0030772852 scopus 로고    scopus 로고
    • The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of pseudouridine 55 in both mitochondrial and cytoplasmic tRNAs
    • Becker, H.F., Motorin, Y., Planta, R.J. and Grosjean, H. (1997) The yeast gene YNL292w encodes a pseudouridine synthase (Pus4) catalyzing the formation of pseudouridine 55 in both mitochondrial and cytoplasmic tRNAs. Nucleic Acids Res., 25, 4493-4499.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4493-4499
    • Becker, H.F.1    Motorin, Y.2    Planta, R.J.3    Grosjean, H.4
  • 2
    • 0003144115 scopus 로고
    • Isolation of photosynthesis mutants in Chlamydomonas
    • Edelman, N., Hallick, R.B. and Chua, N.-H. (eds). Elsevier Biomedical Press, Amsterdam, The Netherlands
    • Bennoun, P. and Delepelaire, P. (1982) Isolation of photosynthesis mutants in Chlamydomonas. In Edelman, N., Hallick, R.B. and Chua, N.-H. (eds), Methods in Chloroplast Molecular Biology. Elsevier Biomedical Press, Amsterdam, The Netherlands, pp. 25-38.
    • (1982) Methods in Chloroplast Molecular Biology , pp. 25-38
    • Bennoun, P.1    Delepelaire, P.2
  • 3
    • 0023779507 scopus 로고
    • Biochemical studies on lysin, a cell wall degrading enzyme released during fertilization in Chlamydomonas
    • Buchanan, M.J. and Snell, W.J. (1988) Biochemical studies on lysin, a cell wall degrading enzyme released during fertilization in Chlamydomonas. Exp. Cell Res., 179, 181-193.
    • (1988) Exp. Cell Res. , vol.179 , pp. 181-193
    • Buchanan, M.J.1    Snell, W.J.2
  • 4
    • 0024296483 scopus 로고
    • Mutant phenotypes support a trans-splicing mechanism for expression of the tripartite psaA gene in the C.reinhardtii chloroplast
    • Choquet, Y., Goldschmidt-Clermont, M., Girard-Bascou, J., Kück, U., Bennoun, P. and Rochaix, J.D. (1988) Mutant phenotypes support a trans-splicing mechanism for expression of the tripartite psaA gene in the C.reinhardtii chloroplast. Cell, 52, 903-913.
    • (1988) Cell , vol.52 , pp. 903-913
    • Choquet, Y.1    Goldschmidt-Clermont, M.2    Girard-Bascou, J.3    Kück, U.4    Bennoun, P.5    Rochaix, J.D.6
  • 5
    • 0033053644 scopus 로고    scopus 로고
    • 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: Deletion, mutation of the conserved Asp102 residue and sequence comparison among all other pseudouridine synthases
    • Conrad, J., Niu, L., Rudd, K., Lane, B.G. and Ofengand, J. (1999) 16S ribosomal RNA pseudouridine synthase RsuA of Escherichia coli: deletion, mutation of the conserved Asp102 residue and sequence comparison among all other pseudouridine synthases. RNA, 5, 751-763.
    • (1999) RNA , vol.5 , pp. 751-763
    • Conrad, J.1    Niu, L.2    Rudd, K.3    Lane, B.G.4    Ofengand, J.5
  • 6
    • 0024278708 scopus 로고
    • Purification and properties of the major nuclease from mitochondria of Saccharomyces cerevisiae
    • Dake, E., Hofmann, T.J., McIntire, S., Hudson, A. and Zassenhaus, H. (1988) Purification and properties of the major nuclease from mitochondria of Saccharomyces cerevisiae. J. Biol. Chem., 263, 7691-7702.
    • (1988) J. Biol. Chem. , vol.263 , pp. 7691-7702
    • Dake, E.1    Hofmann, T.J.2    McIntire, S.3    Hudson, A.4    Zassenhaus, H.5
  • 7
    • 0024743663 scopus 로고
    • The argininosuccinate lyase gene of Chlamydomonas reinhardtii: An important tool for nuclear transformation and for correlating the genetic and molecular maps of the ARG7 locus
    • Debuchy, R., Purton, S. and Rochaix, J.D. (1989) The argininosuccinate lyase gene of Chlamydomonas reinhardtii: an important tool for nuclear transformation and for correlating the genetic and molecular maps of the ARG7 locus. EMBO J., 8, 2803-2809.
    • (1989) EMBO J. , vol.8 , pp. 2803-2809
    • Debuchy, R.1    Purton, S.2    Rochaix, J.D.3
  • 8
    • 0002067354 scopus 로고    scopus 로고
    • Aminoacyl tRNA synthetases involved in group I intron splicing
    • Green, R. and Schroeder, R. (eds). Landes Bioscience, Austin, TX, USA
    • Dujardin, G. and Herbert, C.J. (1997) Aminoacyl tRNA synthetases involved in group I intron splicing. In Green, R. and Schroeder, R. (eds), Ribosomal RNA and Group I Introns. Landes Bioscience, Austin, TX, USA, pp. 179-198.
    • (1997) Ribosomal RNA and Group I Introns , pp. 179-198
    • Dujardin, G.1    Herbert, C.J.2
  • 9
    • 0002192319 scopus 로고
    • Computer aided fluorescence imaging of photosynthetic systems
    • Fenton, J.M. and Crofts, A.R. (1990) Computer aided fluorescence imaging of photosynthetic systems. Photosynth. Res., 26, 59-66.
    • (1990) Photosynth. Res. , vol.26 , pp. 59-66
    • Fenton, J.M.1    Crofts, A.R.2
  • 10
    • 0003127739 scopus 로고    scopus 로고
    • Genetics of mitochondrial translation
    • Hershey, J.W.B., Matthews, M.B. and Sonenberg, N. (eds). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
    • Fox, T.D. (1996) Genetics of mitochondrial translation. In Hershey, J.W.B., Matthews, M.B. and Sonenberg, N. (eds), Translational Control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, pp. 733-758.
    • (1996) Translational Control , pp. 733-758
    • Fox, T.D.1
  • 11
    • 45149135688 scopus 로고
    • Chloroplast transit peptides from the green alga Clamydomonas reinhardtii share features with both mitochondrial and higher plant chloroplast presequences
    • Franzén, L.G., Rochaix, J.D. and von Heijne, G. (1990) Chloroplast transit peptides from the green alga Clamydomonas reinhardtii share features with both mitochondrial and higher plant chloroplast presequences. FEBS Lett., 260, 165-168.
    • (1990) FEBS Lett. , vol.260 , pp. 165-168
    • Franzén, L.G.1    Rochaix, J.D.2    Von Heijne, G.3
  • 12
    • 0033594085 scopus 로고    scopus 로고
    • Minifly, a Drosophila gene required for ribosome biogenesis
    • Giordano, E., Peluso, I., Senger, S. and Furia, M. (1999) minifly, a Drosophila gene required for ribosome biogenesis. J. Cell Biol., 144, 1123-1133.
    • (1999) J. Cell Biol. , vol.144 , pp. 1123-1133
    • Giordano, E.1    Peluso, I.2    Senger, S.3    Furia, M.4
  • 15
    • 0030832614 scopus 로고    scopus 로고
    • Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA
    • Guo, H., Zimmerly, S., Perlman, P.S. and Lambowitz, A.M. (1997) Group II intron endonucleases use both RNA and protein subunits for recognition of specific sequences in double-stranded DNA. EMBO J., 16, 6835-6848.
    • (1997) EMBO J. , vol.16 , pp. 6835-6848
    • Guo, H.1    Zimmerly, S.2    Perlman, P.S.3    Lambowitz, A.M.4
  • 16
    • 0031702847 scopus 로고    scopus 로고
    • A single nuclear locus is involved in both chloroplast RNA trans-splicing and 3′ end processing
    • Hahn, D., Nickelsen, J., Hackert, A. and Kück, U. (1998) A single nuclear locus is involved in both chloroplast RNA trans-splicing and 3′ end processing. Plant J., 15, 575-581.
    • (1998) Plant J. , vol.15 , pp. 575-581
    • Hahn, D.1    Nickelsen, J.2    Hackert, A.3    Kück, U.4
  • 18
    • 0031799895 scopus 로고    scopus 로고
    • X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions
    • Heiss, N.S., Knight, S.W., Vulliamy, T.J., Klauck, S.M., Wiemann, S., Mason, P.J., Poustka, A. and Dokal, I. (1998) X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions. Nature Genet., 19, 32-38.
    • (1998) Nature Genet. , vol.19 , pp. 32-38
    • Heiss, N.S.1    Knight, S.W.2    Vulliamy, T.J.3    Klauck, S.M.4    Wiemann, S.5    Mason, P.J.6    Poustka, A.7    Dokal, I.8
  • 19
    • 0003315578 scopus 로고    scopus 로고
    • Assembly of light-harvesting systems
    • Rochaix, J.D., Goldschmidt-Clermont, M. and Merchant, S. (eds). Kluwer Academic Publishers, Dordrecht, Germany
    • Hoober, J.K., Park, H., Wolfe, G.R., Komine, Y. and Eggink, L.L. (1998) Assembly of light-harvesting systems. In Rochaix, J.D., Goldschmidt-Clermont, M. and Merchant, S. (eds), The Molecular Biology of Chloroplasts and Mitochondria. Kluwer Academic Publishers, Dordrecht, Germany, pp. 363-376.
    • (1998) The Molecular Biology of Chloroplasts and Mitochondria , pp. 363-376
    • Hoober, J.K.1    Park, H.2    Wolfe, G.R.3    Komine, Y.4    Eggink, L.L.5
  • 20
    • 0032488657 scopus 로고    scopus 로고
    • A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst
    • Huang, L., Pookanjanatavip, M., Gu, X. and Santi, D.V. (1998) A conserved aspartate of tRNA pseudouridine synthase is essential for activity and a probable nucleophilic catalyst. Biochemistry, 37, 344-351.
    • (1998) Biochemistry , vol.37 , pp. 344-351
    • Huang, L.1    Pookanjanatavip, M.2    Gu, X.3    Santi, D.V.4
  • 21
    • 0029019481 scopus 로고
    • Identification of a plastid protein involved in vesicle fusion and/or membrane protein translocation
    • Hugueney, P.F., Bouvier, A., Badillo, A., D'Harlingue, M., Kuntz, M. and Camara, B. (1995) Identification of a plastid protein involved in vesicle fusion and/or membrane protein translocation. Proc. Natl Acad. Sci. USA, 92, 5630-5634.
    • (1995) Proc. Natl Acad. Sci. USA , vol.92 , pp. 5630-5634
    • Hugueney, P.F.1    Bouvier, A.2    Badillo, A.3    D'Harlingue, M.4    Kuntz, M.5    Camara, B.6
  • 22
    • 0031106356 scopus 로고    scopus 로고
    • Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors
    • Jenkins, B.D., Kulhanek, D.J. and Barkan, A. (1997) Nuclear mutations that block group II RNA splicing in maize chloroplasts reveal several intron classes with distinct requirements for splicing factors. Plant Cell, 9, 283-296.
    • (1997) Plant Cell , vol.9 , pp. 283-296
    • Jenkins, B.D.1    Kulhanek, D.J.2    Barkan, A.3
  • 23
    • 0000366556 scopus 로고    scopus 로고
    • The biochemical machinery of plastid envelope membranes
    • Joyard, J. et al. (1998) The biochemical machinery of plastid envelope membranes. Plant. Physiol., 118, 715-723.
    • (1998) Plant. Physiol. , vol.118 , pp. 715-723
    • Joyard, J.1
  • 24
    • 0029945504 scopus 로고    scopus 로고
    • Pseudouridine synthase: Four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases
    • Koonin, E.V. (1996) Pseudouridine synthase: four families of enzymes containing a putative uridine-binding motif also conserved in dUTPases and dCTP deaminases. Nucleic Acids Res., 24, 2411-2415.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2411-2415
    • Koonin, E.V.1
  • 25
    • 0000221783 scopus 로고
    • Structural and transcriptional analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: Evidence for in vivo trans splicing
    • Kück, U., Choquet, Y., Schneider, M., Dron, M. and Bennoun, P. (1987) Structural and transcriptional analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardtii: evidence for in vivo trans splicing. EMBO J., 6, 2185-2195.
    • (1987) EMBO J. , vol.6 , pp. 2185-2195
    • Kück, U.1    Choquet, Y.2    Schneider, M.3    Dron, M.4    Bennoun, P.5
  • 27
    • 0025001288 scopus 로고
    • Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing
    • Lambowitz, A.M. and Perlman, P.S. (1990) Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing. Trends Biochem. Sci., 15, 440-444.
    • (1990) Trends Biochem. Sci. , vol.15 , pp. 440-444
    • Lambowitz, A.M.1    Perlman, P.S.2
  • 28
    • 0000788076 scopus 로고
    • Co-immunolocalization of topoisomerase II and chloroplast DNA in developing, dividing and mature wheat chloroplasts
    • Marisson, J.L. and Leech, R.M. (1992) Co-immunolocalization of topoisomerase II and chloroplast DNA in developing, dividing and mature wheat chloroplasts. Plant J., 2, 783-790.
    • (1992) Plant J. , vol.2 , pp. 783-790
    • Marisson, J.L.1    Leech, R.M.2
  • 29
    • 0030963986 scopus 로고    scopus 로고
    • Homing of group II intron from Lactococcus lactis
    • Mills, D.A., Manias, D.A., McKay, L.L. and Dunny, G.M. (1997) Homing of group II intron from Lactococcus lactis. J. Bacteriol., 179, 6107-6111.
    • (1997) J. Bacteriol. , vol.179 , pp. 6107-6111
    • Mills, D.A.1    Manias, D.A.2    McKay, L.L.3    Dunny, G.M.4
  • 30
    • 0029258983 scopus 로고
    • Purification, cloning and properties of the tRNA pseudouridine 55 synthase from Escherichia coli
    • Nurse, K., Wrzesinski, J., Bakin, A., Lane, B.G. and Ofengand, J. (1995) Purification, cloning and properties of the tRNA pseudouridine 55 synthase from Escherichia coli. RNA, 1, 102-112.
    • (1995) RNA , vol.1 , pp. 102-112
    • Nurse, K.1    Wrzesinski, J.2    Bakin, A.3    Lane, B.G.4    Ofengand, J.5
  • 31
    • 0028618244 scopus 로고
    • Pseudouridine formation in small nuclear RNAs
    • Patton, J.R. (1994) Pseudouridine formation in small nuclear RNAs. Biochimie, 76, 1129-1132.
    • (1994) Biochimie , vol.76 , pp. 1129-1132
    • Patton, J.R.1
  • 32
    • 0028369675 scopus 로고
    • Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library
    • Purton, S. and Rochaix, J.D. (1994) Complementation of a Chlamydomonas reinhardtii mutant using a genomic cosmid library. Plant Mol. Biol., 24, 533-537.
    • (1994) Plant Mol. Biol. , vol.24 , pp. 533-537
    • Purton, S.1    Rochaix, J.D.2
  • 33
    • 0032103821 scopus 로고    scopus 로고
    • The architectural organization and mechanistic function of group II intron structural elements
    • Qin, P.Z. and Pyle, A.M. (1998) The architectural organization and mechanistic function of group II intron structural elements. Curr. Opin. Struct. Biol., 8, 301-308.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 301-308
    • Qin, P.Z.1    Pyle, A.M.2
  • 35
    • 0031787478 scopus 로고    scopus 로고
    • A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli
    • Raychaudhuri, S., Conrad, J., Hall, B.G. and Ofengand, J. (1998) A pseudouridine synthase required for the formation of two universally conserved pseudouridines in ribosomal RNA is essential for normal growth of Escherichia coli. RNA, 4, 1407-1417.
    • (1998) RNA , vol.4 , pp. 1407-1417
    • Raychaudhuri, S.1    Conrad, J.2    Hall, B.G.3    Ofengand, J.4
  • 36
    • 0033516555 scopus 로고    scopus 로고
    • Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA
    • Raychaudhuri, S., Niu, L., Conrad, J., Lane, B.G. and Ofengand, J. (1999) Functional effect of deletion and mutation of the Escherichia coli ribosomal RNA and tRNA pseudouridine synthase RluA. J. Biol. Chem., 274, 18880-18886.
    • (1999) J. Biol. Chem. , vol.274 , pp. 18880-18886
    • Raychaudhuri, S.1    Niu, L.2    Conrad, J.3    Lane, B.G.4    Ofengand, J.5
  • 38
    • 4243555414 scopus 로고    scopus 로고
    • Plant ribosome recycling factor homologue is a chloroplastic protein and is bactericidal in Escherichia coli carrying temperature-sensitive ribosome recycling factor
    • Rolland, N. et al. (1999) Plant ribosome recycling factor homologue is a chloroplastic protein and is bactericidal in Escherichia coli carrying temperature-sensitive ribosome recycling factor. Proc. Natl Acad. Sci. USA, 96, 5464-5469.
    • (1999) Proc. Natl Acad. Sci. USA , vol.96 , pp. 5464-5469
    • Rolland, N.1
  • 40
    • 0025325983 scopus 로고
    • The 'megaprimer' method of site-directed mutagenesis
    • Sarkar, G. and Sommer, S.S. (1990) The 'megaprimer' method of site-directed mutagenesis. BioTechniques, 8, 404-407.
    • (1990) BioTechniques , vol.8 , pp. 404-407
    • Sarkar, G.1    Sommer, S.S.2
  • 41
    • 0027511159 scopus 로고
    • Detection and characterization of a plastid envelope DNA-binding protein which may anchor plastid nucleoids
    • Sato, N., Albrieux, C., Joyard, J., Douce, R. and Kuroiwa, T. (1993) Detection and characterization of a plastid envelope DNA-binding protein which may anchor plastid nucleoids. EMBO J., 12, 555-561.
    • (1993) EMBO J. , vol.12 , pp. 555-561
    • Sato, N.1    Albrieux, C.2    Joyard, J.3    Douce, R.4    Kuroiwa, T.5
  • 42
    • 0026261876 scopus 로고
    • Five easy pieces
    • Sharp, P.A. (1991) Five easy pieces. Science, 254, 663.
    • (1991) Science , vol.254 , pp. 663
    • Sharp, P.A.1
  • 43
    • 0022186670 scopus 로고
    • Measurement of protein bicinchoninic acid
    • Smith, P.K. et al. (1995) Measurement of protein bicinchoninic acid. Anal. Biochem., 150, 76-85.
    • (1995) Anal. Biochem. , vol.150 , pp. 76-85
    • Smith, P.K.1
  • 44
    • 0029883758 scopus 로고    scopus 로고
    • The bacterial phleomycin resistance gene Ble as a dominant selectable marker in Chlamydomonas
    • Stevens, D.R., Rochaix, J.D. and Purton, S. (1996) The bacterial phleomycin resistance gene Ble as a dominant selectable marker in Chlamydomonas. Mol. Gen. Genet., 251, 23-30.
    • (1996) Mol. Gen. Genet. , vol.251 , pp. 23-30
    • Stevens, D.R.1    Rochaix, J.D.2    Purton, S.3
  • 46
    • 0028970305 scopus 로고
    • Phylogenetic conservation of modified nucleotides in the terminal loop1 of the spliceosomal U5 snRNA
    • Szkukalek, A., Myslinski, E., Mougin, A., Luhrmann, R. and Branlant, C. (1995) Phylogenetic conservation of modified nucleotides in the terminal loop1 of the spliceosomal U5 snRNA. Biochimie, 77, 16-21.
    • (1995) Biochimie , vol.77 , pp. 16-21
    • Szkukalek, A.1    Myslinski, E.2    Mougin, A.3    Luhrmann, R.4    Branlant, C.5
  • 47
    • 17044461720 scopus 로고    scopus 로고
    • Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: Support for matK as an essential splicing factor
    • Vogel, J., Hubschmann, T., Bornerand, T. and Hess, W.R. (1997) Splicing and intron-internal RNA editing of trnK-matK transcripts in barley plastids: support for matK as an essential splicing factor. J. Mol. Biol., 270, 179-187.
    • (1997) J. Mol. Biol. , vol.270 , pp. 179-187
    • Vogel, J.1    Hubschmann, T.2    Bornerand, T.3    Hess, W.R.4
  • 49
    • 0030943411 scopus 로고    scopus 로고
    • Pet127p, a membrane-associated protein involved in stability and processing of Saccharomyces cerevisiae mitochondrial RNAs
    • Wiesenberger, G. and Fox, T.D. (1997) Pet127p, a membrane-associated protein involved in stability and processing of Saccharomyces cerevisiae mitochondrial RNAs. Mol. Cell. Biol., 17, 2816-2824.
    • (1997) Mol. Cell. Biol. , vol.17 , pp. 2816-2824
    • Wiesenberger, G.1    Fox, T.D.2
  • 50
    • 0027759495 scopus 로고
    • Guides to the heart of the spliceosome
    • Wise, J.A. (1993) Guides to the heart of the spliceosome. Science, 262, 1978-1979.
    • (1993) Science , vol.262 , pp. 1978-1979
    • Wise, J.A.1
  • 51
    • 0032572530 scopus 로고    scopus 로고
    • Translation of the chloroplast psbA mRNA requires the nuclear-encoded poly(A)-binding protein, RB47
    • Yohn, C.B., Cohen, A., Rosch, C., Kuchka, M.R. and Mayfield, S.P. (1998) Translation of the chloroplast psbA mRNA requires the nuclear-encoded poly(A)-binding protein, RB47. J. Cell Biol., 142, 435-442.
    • (1998) J. Cell Biol. , vol.142 , pp. 435-442
    • Yohn, C.B.1    Cohen, A.2    Rosch, C.3    Kuchka, M.R.4    Mayfield, S.P.5
  • 52
    • 0031953257 scopus 로고    scopus 로고
    • Low density membranes are associated with RNA-binding proteins and thylakoids in the chloroplast of Chlamydomonas reinhardtii
    • Zerges, W. and Rochaix, J.D. (1998) Low density membranes are associated with RNA-binding proteins and thylakoids in the chloroplast of Chlamydomonas reinhardtii. J. Cell Biol., 140, 101-110.
    • (1998) J. Cell Biol. , vol.140 , pp. 101-110
    • Zerges, W.1    Rochaix, J.D.2


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