Hepatitis C virus core protein interacts with a human DEAD box protein DDX3

Virology

Volumn 257, Issue 2, 1999, Pages 330-340

  Owsianka, Ania M ^a   Patel, Arvind H ^a  

^a INSTITUTE OF VIROLOGY   (United Kingdom)

Author keywords

DDX3 DEAD box protein; HCV core protein; RNA helicase; RS domain

Indexed keywords

AMINO ACID; CORE PROTEIN; GLUTATHIONE TRANSFERASE; HOMEODOMAIN PROTEIN; HYBRID PROTEIN; RNA HELICASE; VIRUS RNA;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; DNA LIBRARY; GENE EXPRESSION; HELA CELL; HEPATITIS C; HEPATITIS C VIRUS; HUMAN; HUMAN CELL; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN INTERACTION; RNA METABOLISM; VACCINIA VIRUS; VIRUS RECOMBINANT; VIRUS REPLICATION;

HEPATITIS C VIRUS; MURINAE; RNA VIRUSES; VACCINIA; VACCINIA VIRUS;

EID: 0033541960     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1999.9659     Document Type: Article

References (69)

1. Barba G., Harper F., Harada T., Kohara M., Goulinet S., Matsuura Y., Eder G., Schaff Zs., Chapman M. J., Miyamura T., Brechot C. Hepatitis C virus core protein shows a cytoplasmic localization and associates to cellular lipid storage droplets. Proc. Natl. Acad. Sci. USA. 94:1997;1200-1205.
2. Bartel P. L., Chien C. T., Sternglaz R., Fields S. Using the two-hybrid system to detect protein-protein interactions. Cellular Interactions in Development: A Practical Approach. 1993a;Oxford University Press, Oxford. p. 153-179.
3. Bartel P. L., Chien C. T., Sternglaz R., Fields S. Elimination of false positives that arise in using the two-hybrid system. BioTechniques. 14:1993b;920-924.
4. Chen C.-M., You L.-R., Hwang L.-H., Wu Lee Y.-H. Direct interaction of hepatitis C virus core protein with the cellular lymphotoxin-β receptor modulates the signal pathway of the lymphotoxin-β receptor. J. Virol. 71:1997;9417-9426.
5. Chien C. T., Bartel P. L., Sternglaz R., Fields S. The two-hybrid system: A method to identify and clone genes for proteins that interact with a protein of interest. Proc. Natl. Acad. Sci. USA. 88:1991;9578-9582.
6. Choo Q.-L., Kuo G., Weiner A. J., Overby L. R., Bradley D. W., Houghton M. Isolation of cDNA derived from a blood-borne non-A, non-B viral hepatitis genome. Science. 244:1989;359-362.
7. Choo Q.-L., Richman K. H., Han J. H., Berger K., Lee C., Dong C., Gallegos C., Cott D., Edina-Selby A., Barr P. J., Weiner A. J., Bradley D. W., Kuo G., Houghton M. Genetic organization and diversity of the hepatitis C virus. Proc. Natl. Acad. Sci. USA. 88:1991;2451-2455.
8. Chuang R.-Y., Weaver P. L., Liu Z., Chang T.-H. Requirement of the DEAD-box protein DED1p for messenger RNA translation. Science. 275:1997;1468-1471.
9. Chung J., Lee S.-G., Song K. Identification of a human homolog of a putative RNA helicase gene (mDEAD3) expressed in mouse erythroid cells. Korean J. Biochem. 27:1995;193-197.
10. Davison A. J., Moss B. New vaccinia virus recombination plasmids incorporating a synthetic late promoter for high level expression of foreign proteins. Nucleic Acids Res. 18:1990;4285-4286.
11. De la Cruz J., Iost I., Kressler D., Linder P. The p20 and Ded1 proteins have antagonistic roles in eIF4E-dependent translation inSaccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA. 94:1997;5201-5206.
12. Fields S., Song O. A novel genetic system to detect protein-protein interactions. Nature. 340:1989;245-247.
13. Fu X.-D. The superfamily of arginine/serine-rich splicing factors. RNA. 1:1995;663-680.
14. Fuller S., Takahashi M., Hurrell G. R. Current Protocols in Molecular Biology. 1997;Wiley Interscience, New York.
15. Gee S. L., Conboy J. G. Mouse erythroid cells express multiple putative RNA helicase genes exhibiting high sequence conservation from yeast to mammals. Gene. 140:1994;171-177.
16. Geourjon C., Deleague G. SOPM: A self optimised prediction method for protein secondary structure prediction. Prot. Eng. 7:1994;157-164.
17. Geourjon C., Deleague G. SOPMA: Significant improvements in protein secondary structure prediction by prediction from multiple alignments. Comput. Appli. Biosci. 11:1995;681-684.
18. Gietz D., St. Jean A., Woods R. A., Schiest R. H. Improved method for high efficiency transformation of intact yeast cells. Nucleic Acids Res. 20:1992;1425.
19. Gorbalenya A. E., Koonin E. V. Helicases: Amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3:1993;419-429.
20. Gururajan R., Perry O. H., Melto D. A., Weeks D. L. TheXenopusAn3. Nature. 349:1991;717-719.
21. Gururajan R., Weeks D. L. An3 protein encoded by a localized maternal mRNA inXenopus laevis. Biochim. Biophys. Acta. 1350:1997;169-182.
22. Hedley M. H., Amrein H., Maniatis T. An amino acid sequence motif sufficient for subnuclear localization of an arginine/serine-rich splicing factor. Proc. Natl. Acad. Sci. USA. 92:1995;11524-11528.
23. Hijikata M., Kato N., Ootsuyama Y., Nakagawa M., Shimotohna K. Gene mapping of the putative structural region of the hepatitis C virus genome byin vitro. Proc. Natl. Acad. Sci. USA. 88:1991;5547-5551.
24. Houghton M. Hepatitis C viruses. Fields B. N., Knipe D. M., Howley P. M. Fields' Virology. 1996;1035-1058 Lippincott-Raven, Philadelphia.
25. Hsieh T.-Y., Matsumoto M., Chou H.-C., Schneider R., Hwang S. B., Lee A. S., Lai M. M. C. Hepatitis C virus core protein interacts with heterogeneous nuclear ribonucleoprotein K. J. Biol. Chem. 273:1998;17651-17659.
26. Jamieson D. J., Rahe B., Pringle J., Beggs J. D. A suppressor of a yeast splicing mutation (prp8-1. Nature. 349:1991;715-717.
27. Kim D. W., Kim J., Gwack Y., Han J. H., Choe J. Mutational analysis of the Hepatitis C virus RNA helicase. J. Virol. 71:1997;9400-9409.
28. Kohtz J. D., Jamison S. F., Will C. L., Zuo P., Luhrmann R., Garcia-Blanco M. A., Manley J. L. Protein-protein interactions and 5′-splice-site recognition in mammalian mRNA precursors. Nature. 368:1994;119-124.
29. Kolykhalov A. A., Agapov E. V., Blight K. J., Mihalik K., Feinstone S. M., Rice C. M. Transmission of hepatitis C by intrahepatic inoculation with transcribed RNA. Science. 277:1997;570-574.
30. Kuo G., Choo Q.-L., Alter H. J., Gitnick G. L., Redeker A. G., Purcell R. H., Miyamura T., Dienstag J. L., Alter M. J., Stevens C. E., Tegtmeier G. E., Bonino F., Colombo M., Lee W.-S., Kuo C., Berger K., Shuster J. R., Overby L. R., Bradley D. W., Houghton M. An assay for circulating antibodies to a major aetiologic virus of human non-A, non-B hepatitis. Science. 244:1989;362-364.
31. Lahn B. T., Page D. C. Functional coherence of the human Y chromosome. Science. 278:1997;675-680.
32. Lamond A. I., Earnshaw W. C. Structure and function in the nucleus. Science. 280:1998;547-553.
33. Leroy P., Alzari P., Sassoon D., Wolgemuth D., Fellous M. The protein encoded by a murine male germ cell-specific transcript is a putative ATP-dependent RNA helicase. Cell. 57:1989;549-559.
34. a)tra. Cell. 67:1991;335-342.
35. Linder P., Lasko P. F., Ashburner M., Leroy P., Nielsen P. J., Nishi K., Schnier J., Slonimski. P. P. Birth of the D-E-A-D box. Nature. 337:1989;121-122.
36. Liu Q., Tackney C., Bhat R. A., Prince A. M., Zhang P. Regulated processing of hepatitis C virus core protein is linked to subcellular localization. J. Virol. 71:1997;657-662.
37. Lorsch J. R., Herschlag D. The DEAD box protein eIF4A. 1. A minimal kinetic and thermodynamic framework reveals coupled binding of RNA and nucleotide. Biochemistry. 37:1998a;2180-2193.
38. Lorsch J. R., Herschlag D. The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes. Biochemistry. 37:1998b;2194-2206.
39. Matsumoto M., Hsieh T.-Y., Zhu N., VanArsdale T., Hwang S. B., Jeng K.-S., Gorbalenya A. E., Lo S.-Y., Ou J.-H., Ware C. F., Lai M. M. C. Hepatitis C virus core protein interacts with the cytoplasmic tail of lymphotoxin-β receptor. J. Virol. 71:1997;1301-1309.
40. Matsumoto M., Hwang S. B., Jeng K.-S., Zhu N., Lai M. M. C. Homotypic interaction and multimerization of hepatitis C virus core protein. Virology. 218:1996;43-51.
41. Mellor J., Holmes E. C., Jarvis L. M., Yap P. L., Simmonds P. Investigation of the pattern of hepatitis C virus sequence diversity in different geographical regions: Implications for virus classification. J. Gen. Virol. 76:1995;2493-2507.
42. Moradpour D., Wakita T., Tokushige K., Carlson R. I., Krawczynski K., Wands J. R. Characterization of three novel monoclonal antibodies against hepatitis C virus core protein. J. Med. Virol. 48:1996;234-241.
43. Moss B., Elroy-Stein O., Mizukami T., Alexander W. A., Feurst T. R. New mammalian vector. Nature. 348:1990;91-92.
44. Nolandt O., Kern V., Muller H., Pfaff E., Theilmann L., Welker R., Krausslich H.-G. Analysis of hepatitis C virus core protein interaction domains. J. Gen. Virol. 78:1997;1331-1340.
45. Park S. H., Lee S. G., Kim Y., Song K. The assignment of a human putative helicase gene, DDX3, to human X chromosome bands p11.3->p11.23. Cytogenet. Cell Genet. 81:1998;178-179.
46. Pause A., Sonenberg N. Mutational analysis of a DEAD box RNA helicase: The mammalian translation initiation factor eIF-4A. EMBO J. 11:1992;2643-2654.
47. Pause A., Sonenberg N. Helicases and unwinding in translation. Curr. Opin. Struct. Biol. 3:1993;953-959.
48. Pearson W. R., Lipman D. J. Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA. 85:1988;2444-2448.
49. Ralston R., Thudium K., Berger K., Kuo C., Gervase B., Hall J., Selby M., Kuo G., Houghton M., Choo Q.-L. Characterization of hepatitis C virus envelope glycoprotein complexes expressed by recombinant vaccinia viruses. J. Virol. 67:1993;6753-6761.
50. Ray R. B., Lagging L. M., Meyer K., Ray R. Hepatitis C virus core protein co-operates withras. J. Virol. 70:1996;4438-4443.
51. Ray R. B., Lagging L. M., Meyer K., Steele R., Ray R. Transcriptional regulation of cellular and viral promoters by the hepatitis C virus core protein. Virus Res. 37:1995;209-220.
52. WAF1/Cip/Sid1. Gene. 208:1998;331-336.
53. Rice C. M. Flaviviridae: The viruses and their replication. Fields B. N., Knipe D. M., Howley P. M. Fields Virology. 1996;931-959 Lippincott-Raven, Philadelphia.
54. Ryan M. D., Monaghan S., Flint M. Virus-encoded proteinases of the Flaviviridae. J. Gen. Virol. 79:1998;947-959.
55. Santolini E., Migliaccio G., La Monica N. Biosynthesis and biochemical properties of the hepatitis C virus core protein. J. Virol. 68:1994;3631-3641.
56. Schmid S. R., Linder P. D-E-A-D protein family of putative RNA helicases. Mol. Microbiol. 6:1992;283-292.
57. Shrivastava A., Manna S. K., Ray R., Aggarwal B. B. Ectopic expression of hepatitis C virus core protein differentially regulates nuclear transcription factors. J. Virol. 72:1998;9722-9728.
58. Spector D. L., Fu X.-D., Maniatis T. Associations between distinct pre-mRNA splicing components and the cell nucleus. EMBO J. 10:1991;3467-3481.
59. Srinivas R., Ray R. B., Meyer K., Steele R., Ray R. Hepatitis C virus core protein inhibits human immunodeficiency virus type 1 replication. Virus Res. 45:1996;87-92.
60. Staley J. P., Guthrie C. Mechanical Devices of the Spliceosome: Motors, Clocks, Springs, and Things. 1998;. p. 315-326.
61. Stevenson R. J., Hamilton S. J., MacCallum D. E., Hall P. A., Fuller-Pace F. V. Expression of the 'DEAD box' RNA helicase p68 is developmentally and growth regulated and correlates with organ differentiation/maturation in the fetus. J. Pathol. 184:1997;351-359.
62. Suzuki R., Matsuura Y., Suzuki T., Ando A., Chiba J., Harada S., Saito I., Miyamura T. Nuclear localization of the truncated hepatitis C virus core protein with its hydrophobic C terminus deleted. J. Gen. Virol. 76:1995;53-61.
63. Takahishi K., Kishimoto S., Yoshizawa H., Okamoto H., Yoshikawa A., Mishiro A. p26 protein and 33-nm particle associated with nucleocapsid of hepatitis C virus recovered from the circulation of infected hosts. Virology. 191:1992;431-434.
64. Tokita H., Okamoto H., Iizuka H., Kishimoto J., Tsuda F., Miyakawa Y., Mayumi M. The entire nucleotide sequence of three hepatitis C virus isolates in genetic groups 7-9 and comparison with those in the other eight genetic groups. J. Gen. Virol. 79:1998;1847-1857.
65. Wu J. Y., Maniatis T. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell. 75:1993;1061-1070.
66. Yanagi M., Purcell R. H., Emerson S. U., Bukh J. Transcripts from a single full-length cDNA clone of hepatitis C virus are infectious when directly transferred into the liver of a chimpanzee. Proc. Natl. Acad. Sci. USA. 94:1997;8738-8743.
67. Yasui K., Wakita T., Tsukiyama-Kohara K., Funahashi S-I., Ichikawa M., Kajita T., Moradpour D., Wands J. R., Kohara M. The native form and maturation process of hepatitis C virus core protein. J. Virol. 72:1998;6048-6055.
68. Zhu N., Khoshnan A., Schneider R., Matsumoto M., Dennert G., Ware C., Lai M. C. M. Hepatitis C virus core protein binds to the cytoplasmic domain of tumour necrosis factor (TNF) receptor 1 and enhances TNF-induced apoptosis. J. Virol. 72:1998;3691-3697.
69. Zweig M., Helman C. J. Jr., Rabin H., Hampar B. Shared antigenic determinants between two distinct classes of proteins in cells infected with herpes simplex virus. J. Virol. 35:1980;644-652.