-
1
-
-
0023660681
-
Topological unwinding of strong and weak promoters by RNA polymerase. a comparison between the lac wild-type and the UV5 sites of Escherichia coli
-
Amouyal M., Buc H. Topological unwinding of strong and weak promoters by RNA polymerase. A comparison between the lac wild-type and the UV5 sites of Escherichia coli. J. Mol. Biol. 195:1987;795-808
-
(1987)
J. Mol. Biol.
, vol.195
, pp. 795-808
-
-
Amouyal, M.1
Buc, H.2
-
2
-
-
0029618936
-
Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA
-
Bednar J., Furrer P., Katritch V., Stasiak A.Z., Dubochet J., Stasiak A. Determination of DNA persistence length by cryo-electron microscopy. Separation of the static and dynamic contributions to the apparent persistence length of DNA. J. Mol. Biol. 254:1995;579-594
-
(1995)
J. Mol. Biol.
, vol.254
, pp. 579-594
-
-
Bednar, J.1
Furrer, P.2
Katritch, V.3
Stasiak, A.Z.4
Dubochet, J.5
Stasiak, A.6
-
3
-
-
0029252016
-
Adsorption of DNA to mica, silylated mica, and minerals: Characterization by atomic force microscopy
-
Bezanilla M., Manne S., Laney D.E., Lyubchenko Y.L., Hansma H.G. Adsorption of DNA to mica, silylated mica, and minerals characterization by atomic force microscopy. Langmuir. 11:1995;655-659
-
(1995)
Langmuir
, vol.11
, pp. 655-659
-
-
Bezanilla, M.1
Manne, S.2
Laney, D.E.3
Lyubchenko, Y.L.4
Hansma, H.G.5
-
4
-
-
0029970157
-
Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope
-
Bustamante C., Rivetti C. Visualizing protein-nucleic acid interactions on a large scale with the scanning force microscope. Annu. Rev. Biophys. Biomol. Struct. 25:1996;395-429
-
(1996)
Annu. Rev. Biophys. Biomol. Struct.
, vol.25
, pp. 395-429
-
-
Bustamante, C.1
Rivetti, C.2
-
6
-
-
0026003072
-
Control site location and transcriptional regulation in Escherichia coli
-
Collado-Vides J., Magasanik B., Gralla J.D. Control site location and transcriptional regulation in Escherichia coli. Microbiol. Rev. 55:1991;371-394
-
(1991)
Microbiol. Rev.
, vol.55
, pp. 371-394
-
-
Collado-Vides, J.1
Magasanik, B.2
Gralla, J.D.3
-
7
-
-
0024828094
-
Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter
-
Cowing D.W., Mecsas J., Record M.T. Jr, Gross C.A. Intermediates in the formation of the open complex by RNA polymerase holoenzyme containing the sigma factor sigma 32 at the groE promoter. J. Mol. Biol. 210:1989;521-530
-
(1989)
J. Mol. Biol.
, vol.210
, pp. 521-530
-
-
Cowing, D.W.1
Mecsas, J.2
Record Jr., M.T.3
Gross, C.A.4
-
8
-
-
0024342908
-
Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron microscopy
-
Darst S.A., Kubalek E.W., Kornberg R.D. Three-dimensional structure of Escherichia coli RNA polymerase holoenzyme determined by electron microscopy. Nature. 340:1989;730-732
-
(1989)
Nature
, vol.340
, pp. 730-732
-
-
Darst, S.A.1
Kubalek, E.W.2
Kornberg, R.D.3
-
9
-
-
0017817680
-
Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA: Differences in the binding behavior of core and holoenzyme
-
deHaseth P.L., Lohman T.M., Burgess R.R., Record M.T. Jr. Nonspecific interactions of Escherichia coli RNA polymerase with native and denatured DNA differences in the binding behavior of core and holoenzyme. Biochemistry. 17:1978;1612-1622
-
(1978)
Biochemistry
, vol.17
, pp. 1612-1622
-
-
Dehaseth, P.L.1
Lohman, T.M.2
Burgess, R.R.3
Record Jr., M.T.4
-
10
-
-
0026728955
-
The single-nucleotide addition cycle in transcription: A biophysical and biochemical perspective
-
Erie D.A., Yager T.D., von Hippel P.H. The single-nucleotide addition cycle in transcription a biophysical and biochemical perspective. Annu. Rev. Biophys. Biomol. Struct. 21:1992;379-415
-
(1992)
Annu. Rev. Biophys. Biomol. Struct.
, vol.21
, pp. 379-415
-
-
Erie, D.A.1
Yager, T.D.2
Von Hippel, P.H.3
-
11
-
-
0030825269
-
RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box
-
Forget D., Robert F., Grondin G., Burton Z.F., Greenblatt J., Coulombe B. RAP74 induces promoter contacts by RNA polymerase II upstream and downstream of a DNA bend centered on the TATA box. Proc. Natl Acad. Sci. USA. 94:1997;7150-7155
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 7150-7155
-
-
Forget, D.1
Robert, F.2
Grondin, G.3
Burton, Z.F.4
Greenblatt, J.5
Coulombe, B.6
-
12
-
-
0028559915
-
Following the assembly of RNA-polymerase-DNA complexes in aqueous solutions with the scanning force microscope
-
Guthold M., Bezanilla M., Erie D.A., Jenkins B., Hansma H.G., Bustamante C. Following the assembly of RNA-polymerase-DNA complexes in aqueous solutions with the scanning force microscope. Proc. Natl Acad. Sci. USA. 91:1994;12927-12931
-
(1994)
Proc. Natl Acad. Sci. USA
, vol.91
, pp. 12927-12931
-
-
Guthold, M.1
Bezanilla, M.2
Erie, D.A.3
Jenkins, B.4
Hansma, H.G.5
Bustamante, C.6
-
15
-
-
0029863919
-
DNA binding to mica correlates with cationic radius: Assay by atomic force microscopy
-
Hansma H.G., Laney D.E. DNA binding to mica correlates with cationic radius assay by atomic force microscopy. Biophys. J. 70:1996;1933-1939
-
(1996)
Biophys. J.
, vol.70
, pp. 1933-1939
-
-
Hansma, H.G.1
Laney, D.E.2
-
16
-
-
0031193978
-
Properties of biomolecules measured from atomic force microscope images: A review
-
Hansma H.G., Kim K.J., Laney D.E., Garcia R.A., Argaman M., Allen M.J., Parsons S.M. Properties of biomolecules measured from atomic force microscope images a review. J. Struct. Biol. 119:1997;99-108
-
(1997)
J. Struct. Biol.
, vol.119
, pp. 99-108
-
-
Hansma, H.G.1
Kim, K.J.2
Laney, D.E.3
Garcia, R.A.4
Argaman, M.5
Allen, M.J.6
Parsons, S.M.7
-
17
-
-
0032406321
-
Left-handed conformation of histidine-tagged RNA polymerase complexes imaged by atomic force microscopy
-
Hansma H.G., Bezanilla M., Nudler E., Hansma P.K., Hoh J., Kashlev M., Firouz N., Smith B. Left-handed conformation of histidine-tagged RNA polymerase complexes imaged by atomic force microscopy. Probe Microsc. 1:1998;117-125
-
(1998)
Probe Microsc.
, vol.1
, pp. 117-125
-
-
Hansma, H.G.1
Bezanilla, M.2
Nudler, E.3
Hansma, P.K.4
Hoh, J.5
Kashlev, M.6
Firouz, N.7
Smith, B.8
-
18
-
-
0024278602
-
Spatial arrangement of DNA-dependent RNA polymerase of Escherichia coli and DNA in the specific complex. a neutron small angle scattering study
-
Heumann H., Lederer H., Baer G., May R.P., Kjems J.K., Crespi H.L. Spatial arrangement of DNA-dependent RNA polymerase of Escherichia coli and DNA in the specific complex. A neutron small angle scattering study. J. Mol. Biol. 201:1988;115-125
-
(1988)
J. Mol. Biol.
, vol.201
, pp. 115-125
-
-
Heumann, H.1
Lederer, H.2
Baer, G.3
May, R.P.4
Kjems, J.K.5
Crespi, H.L.6
-
19
-
-
0027749617
-
Visualization of single molecules of RNA polymerase sliding along DNA
-
Kabata H., Kurosawa O., Arai I., Washizu M., Margarson S.A., Glass R.E., Shimamoto N. Visualization of single molecules of RNA polymerase sliding along DNA. Science. 262:1993;1561-1563
-
(1993)
Science
, vol.262
, pp. 1561-1563
-
-
Kabata, H.1
Kurosawa, O.2
Arai, I.3
Washizu, M.4
Margarson, S.A.5
Glass, R.E.6
Shimamoto, N.7
-
20
-
-
0031028425
-
Escherichia coli RNA polymerase activity observed using atomic force microscopy
-
Kasas S., Thomson N.H., Smith B.L., Hansma H.G., Zhu X., Guthold M., Bustamante C., Kool E.T., Kashlev M., Hansma P.K. Escherichia coli RNA polymerase activity observed using atomic force microscopy. Biochemistry. 36:1997;461-468
-
(1997)
Biochemistry
, vol.36
, pp. 461-468
-
-
Kasas, S.1
Thomson, N.H.2
Smith, B.L.3
Hansma, H.G.4
Zhu, X.5
Guthold, M.6
Bustamante, C.7
Kool, E.T.8
Kashlev, M.9
Hansma, P.K.10
-
21
-
-
0030730281
-
Trajectory of DNA in the RNA polymerase II transcription preinitiation complex
-
Kim T.K., Lagrange T., Wang Y.H., Griffith J.D., Reinberg D., Ebright R.H. Trajectory of DNA in the RNA polymerase II transcription preinitiation complex. Proc. Natl Acad. Sci. USA. 94:1997;12268-12273
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 12268-12273
-
-
Kim, T.K.1
Lagrange, T.2
Wang, Y.H.3
Griffith, J.D.4
Reinberg, D.5
Ebright, R.H.6
-
22
-
-
0027162310
-
Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein
-
Klose K.E., Weiss D.S., Kustu S. Glutamate at the site of phosphorylation of nitrogen-regulatory protein NTRC mimics aspartyl-phosphate and activates the protein. J. Mol. Biol. 232:1993;67-78
-
(1993)
J. Mol. Biol.
, vol.232
, pp. 67-78
-
-
Klose, K.E.1
Weiss, D.S.2
Kustu, S.3
-
23
-
-
0027979464
-
Conformational analysis of a 139 base-pair DNA fragment containing a single-stranded break and its interaction with human poly(ADP-ribose) polymerase
-
Le Cam E., Fack F., Menissier-de, Murcia J., Cognet J.A., Barbin A., Sarantoglou V., Révet B., Delain E., de Murcia G. Conformational analysis of a 139 base-pair DNA fragment containing a single-stranded break and its interaction with human poly(ADP-ribose) polymerase. J. Mol. Biol. 235:1994;1062-1071
-
(1994)
J. Mol. Biol.
, vol.235
, pp. 1062-1071
-
-
Le Cam, E.1
Fack, F.2
Menissier-De3
Murcia, J.4
Cognet, J.A.5
Barbin, A.6
Sarantoglou, V.7
Révet, B.8
Delain, E.9
De Murcia, G.10
-
26
-
-
0020365692
-
Nitrocellulose filter binding studies of the interactions of Escherichia coli RNA polymerase holoenzyme with deoxyribonucleic acid restriction fragments: Evidence for multiple classes of nonpromoter interactions, some of which display promoter-like properties
-
Melancon P., Burgess R.R., Record M.T. Jr. Nitrocellulose filter binding studies of the interactions of Escherichia coli RNA polymerase holoenzyme with deoxyribonucleic acid restriction fragments evidence for multiple classes of nonpromoter interactions, some of which display promoter-like properties. Biochemistry. 21:1982;4318-4331
-
(1982)
Biochemistry
, vol.21
, pp. 4318-4331
-
-
Melancon, P.1
Burgess, R.R.2
Record Jr., M.T.3
-
27
-
-
0021112630
-
Direct evidence for the preferential binding of Escherichia coli RNA polymerase holoenzyme to the ends of deoxyribonucleic acid restriction fragments
-
Melancon P., Burgess R.R., Record M.T. Jr. Direct evidence for the preferential binding of Escherichia coli RNA polymerase holoenzyme to the ends of deoxyribonucleic acid restriction fragments. Biochemistry. 22:1983;5169-5176
-
(1983)
Biochemistry
, vol.22
, pp. 5169-5176
-
-
Melancon, P.1
Burgess, R.R.2
Record Jr., M.T.3
-
28
-
-
0019878041
-
Effect of several metal ions on misincorporation during transcription
-
Niyogi S.K., Feldman R.P. Effect of several metal ions on misincorporation during transcription. Nucl. Acids Res. 9:1981;2615-2627
-
(1981)
Nucl. Acids Res.
, vol.9
, pp. 2615-2627
-
-
Niyogi, S.K.1
Feldman, R.P.2
-
29
-
-
0027248437
-
Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity: The puzzle of nitrogen regulatory protein C
-
North A.K., Klose K.E., Stedman K.M., Kustu S. Prokaryotic enhancer-binding proteins reflect eukaryote-like modularity the puzzle of nitrogen regulatory protein C. J. Bacteriol. 175:1993;4267-4273
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4267-4273
-
-
North, A.K.1
Klose, K.E.2
Stedman, K.M.3
Kustu, S.4
-
30
-
-
0030783769
-
Tumor suppressor protein p53 binds preferentially to supercoiled DNA
-
Palecek E., Vlk D., Stankova V., Brazda V., Vojtesek B., Hupp T.R., Schaper A., Jovin T.M. Tumor suppressor protein p53 binds preferentially to supercoiled DNA. Oncogene. 15:1997;2201-2209
-
(1997)
Oncogene
, vol.15
, pp. 2201-2209
-
-
Palecek, E.1
Vlk, D.2
Stankova, V.3
Brazda, V.4
Vojtesek, B.5
Hupp, T.R.6
Schaper, A.7
Jovin, T.M.8
-
31
-
-
0028875725
-
Three-dimensional structure of E. coli core RNA polymerase: Promoter binding and elongation conformations of the enzyme
-
Polyakov A., Severinova E., Darst S.A. Three-dimensional structure of E. coli core RNA polymerase promoter binding and elongation conformations of the enzyme. Cell. 83:1995;365-373
-
(1995)
Cell
, vol.83
, pp. 365-373
-
-
Polyakov, A.1
Severinova, E.2
Darst, S.A.3
-
32
-
-
0024598928
-
Function of a bacterial activator protein that binds to transcriptional enhancers
-
Popham D.L., Szeto D., Keener J., Kustu S. Function of a bacterial activator protein that binds to transcriptional enhancers. Science. 243:1989;629-635
-
(1989)
Science
, vol.243
, pp. 629-635
-
-
Popham, D.L.1
Szeto, D.2
Keener, J.3
Kustu, S.4
-
33
-
-
0028031337
-
Direct observation of enzyme activity with the atomic force microscope
-
Radmacher M., Fritz M., Hansma H.G., Hansma P.K. Direct observation of enzyme activity with the atomic force microscope. Science. 265:1994;1577-1579
-
(1994)
Science
, vol.265
, pp. 1577-1579
-
-
Radmacher, M.1
Fritz, M.2
Hansma, H.G.3
Hansma, P.K.4
-
34
-
-
0027244844
-
Evidence of DNA bending in transcription complexes imaged by scanning force microscopy
-
Rees W.A., Keller R.W., Vesenka G.Y., Bustamante C. Evidence of DNA bending in transcription complexes imaged by scanning force microscopy. Science. 260:1993;1646-1649
-
(1993)
Science
, vol.260
, pp. 1646-1649
-
-
Rees, W.A.1
Keller, R.W.2
Vesenka, G.Y.3
Bustamante, C.4
-
35
-
-
0022446209
-
Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter
-
Reitzer L.J., Magasanik B. Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoter. Cell. 45:1986;785-792
-
(1986)
Cell
, vol.45
, pp. 785-792
-
-
Reitzer, L.J.1
Magasanik, B.2
-
36
-
-
0024040338
-
One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase: A mechanism to facilitate promoter location
-
Ricchetti M., Metzger W., Heumann H. One-dimensional diffusion of Escherichia coli DNA-dependent RNA polymerase a mechanism to facilitate promoter location. Proc. Natl Acad. Sci. USA. 85:1988;4610-4614
-
(1988)
Proc. Natl Acad. Sci. USA
, vol.85
, pp. 4610-4614
-
-
Ricchetti, M.1
Metzger, W.2
Heumann, H.3
-
38
-
-
0344839891
-
Molecules in motion: Imaging DNA with the scanning force microscope in aqueous solutions
-
Rippe K., Mücke N., Langowski J. Molecules in motion imaging DNA with the scanning force microscope in aqueous solutions. Bioforum Int. 1:1997;42-44
-
(1997)
Bioforum Int.
, vol.1
, pp. 42-44
-
-
Rippe, K.1
Mücke, N.2
Langowski, J.3
-
39
-
-
1842289164
-
Superhelix dimensions of a 1868 base-pair plasmid determined by scanning force microscopy in air and in aqueous solution
-
Rippe K., Mücke N., Langowski J. Superhelix dimensions of a 1868 base-pair plasmid determined by scanning force microscopy in air and in aqueous solution. Nucl. Acids Res. 25:1997;1736-1744
-
(1997)
Nucl. Acids Res.
, vol.25
, pp. 1736-1744
-
-
Rippe, K.1
Mücke, N.2
Langowski, J.3
-
40
-
-
0032557498
-
Association states of E. coli NtrC protein determined by analytical ultracentrifugation
-
Rippe K., Mücke N., Schulz A. Association states of E. coli NtrC protein determined by analytical ultracentrifugation. J. Mol. Biol. 278:1998;915-933
-
(1998)
J. Mol. Biol.
, vol.278
, pp. 915-933
-
-
Rippe, K.1
Mücke, N.2
Schulz, A.3
-
41
-
-
0030596081
-
Scanning force microscopy of DNA deposited onto mica: Equilibration versus molecular kinetic trapping studied by statistical polymer chain analysis
-
Rivetti C., Guthold M., Bustamante C. Scanning force microscopy of DNA deposited onto mica equilibration versus molecular kinetic trapping studied by statistical polymer chain analysis. J. Mol. Biol. 264:1996;919-932
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 919-932
-
-
Rivetti, C.1
Guthold, M.2
Bustamante, C.3
-
42
-
-
0030297735
-
Striving for atomic resolution in biomolecular topography: The scanning force microscope (SFM)
-
Schaper A., Jovin T.M. Striving for atomic resolution in biomolecular topography the scanning force microscope (SFM). Bioessays. 18:1996;925-935
-
(1996)
Bioessays
, vol.18
, pp. 925-935
-
-
Schaper, A.1
Jovin, T.M.2
-
43
-
-
0025369026
-
Topography of intermediates in transcription initiation of E. coli
-
Schickor P., Metzger W., Werel W., Lederer H., Heumann H. Topography of intermediates in transcription initiation of E. coli. EMBO J. 9:1990;2215-2220
-
(1990)
EMBO J.
, vol.9
, pp. 2215-2220
-
-
Schickor, P.1
Metzger, W.2
Werel, W.3
Lederer, H.4
Heumann, H.5
-
44
-
-
0023656405
-
Promoter search by Escherichia coli RNA polymerase on a circular DNA template
-
Singer P., Wu C.W. Promoter search by Escherichia coli RNA polymerase on a circular DNA template. J. Biol. Chem. 262:1987;14178-14189
-
(1987)
J. Biol. Chem.
, vol.262
, pp. 14178-14189
-
-
Singer, P.1
Wu, C.W.2
-
45
-
-
0023934239
-
Kinetics of promoter search by Escherichia coli RNA polymerase. Effects of monovalent and divalent cations and temperature
-
Singer P.T., Wu C.W. Kinetics of promoter search by Escherichia coli RNA polymerase. Effects of monovalent and divalent cations and temperature. J. Biol. Chem. 263:1988;4208-4214
-
(1988)
J. Biol. Chem.
, vol.263
, pp. 4208-4214
-
-
Singer, P.T.1
Wu, C.W.2
-
46
-
-
0001874501
-
DNA sequence and structure
-
W.K. Olson, M.H. Sarma, R.H. Sarma, Sundaralingam M. Schenectady, NY: Adenine Press
-
Théveny B., Coulaud D., Le, Bret M., Révet B. DNA sequence and structure. Olson W.K., Sarma M.H., Sarma R.H., Sundaralingam M. Structure & Expression, DNA Bending and Curvature. vol. 3:1988;39-55 Adenine Press, Schenectady, NY
-
(1988)
Structure & Expression, DNA Bending and Curvature
, vol.3
, pp. 39-55
-
-
Théveny, B.1
Coulaud, D.2
Le, B.M.3
Révet, B.4
-
48
-
-
0030894489
-
Unusual oligomerization required for activity of a bacterial enhancer-binding protein
-
Wyman C., Rombel I., North A.K., Bustamante C., Kustu S. Unusual oligomerization required for activity of a bacterial enhancer-binding protein. Science. 275:1997;1658-1661
-
(1997)
Science
, vol.275
, pp. 1658-1661
-
-
Wyman, C.1
Rombel, I.2
North, A.K.3
Bustamante, C.4
Kustu, S.5
|