A tobamovirus genome that contains an internal ribosome entry site functional in vitro

Virology

Volumn 232, Issue 1, 1997, Pages 32-43

  Ivanov, P A ^a   Karpova, O V ^a   Skulachev, M V ^a   Tomashevskaya, O L ^a   Rodionova, N P ^a   Dorokhov, Yu L ^a   Atabekov, J G ^a  

^a MOSCOW STATE UNIVERSITY   (Russian Federation)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; GENE SEQUENCE; MOSAIC VIRUS; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; RNA TRANSLATION; VIRUS GENOME; VIRUS TRANSCRIPTION;

EID: 0030970996     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8525     Document Type: Article

References (50)

1. Agol V. I. The 5′-untranslated region of picornaviral genomes. Adv. Virus Res. 40:1991;103-180.
2. Alonso E., Garcia-Luque I., de la Cruz A., Wicke B., Avila-Rincon J., Serra M. T., Castresana C., Diaz-Ruiz J. R. Nucleotide sequence of the genomic RNA of pepper mild mosaic virus, a resistance-breaking tobamovirus in pepper. J. Gen. Virol. 72:1991;2875-2884.
3. Basso J., Dallaire P., Charest P. J., Daventier Y., Laliberte J. F. Evidence for an internal ribosome entry site within the 5′-nontranslated region of turnip mosaic potyvirus RNA. J. Gen. Virol. 75:1994;3157-3165.
4. Belsham G. J., Sonenberg N. RNA-protein interactions in regulation of picornavirus RNA translation. Microbiol. Rev. 60:1996;499-511.
5. Berlioz C., Darlix J. L. An internal ribosomal entry mechanism promotes translation of murine leukemia virusgag. J. Virol. 69:1995;2214-2222.
6. Berlioz C., Torrent C., Darlix J.-L. An internal ribosomal entry signal in the rat VL30 region of the Harwey murine sarcoma virus leader and its use in dicistronic retroviral vectors. J. Virol. 69:1995;6400-6407.
7. Dorokhov Yu. L., Ivanov P. A., Novikov V. K., Efimov V. A., Atabekov J. G. Cruciferous tobamovirus: nucleotide sequences of movement protein, coat protein gene and 3′ untranslated region. Dokl. Russian Acad. Sci. 332:1993;518-522.
8. Dorokhov Yu. L., Ivanov P. A., Novikov V. K., Agranovsky A. A., Morozov S. Yu., Efimov V. A., Casper R., Atabekov J. G. Complete nucleotide sequence and genome organization of a tobamovirus infecting cruciferae plants. FEBS Lett. 350:1994;5-8.
9. Fütterer J., Kiss-Laszlo Z., Hohn T. Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA. Cell. 73:1993;789-802.
10. Gan W., Rhoads R. E. Internal initiation directed by the 5′-untranslated region of the mRNA for eIF-4G, a factor involved in the picornavirus-induced switch from cap-dependent to internal initiation. J. Biol. Chem. 271:1996;623-626.
11. Goelet P., Lomonossoff G., Butler P. J. G., Akam M., Gait M. J., Karn J. Nucleotide sequence of tobacco mosaic virus. Proc. Natl. Acad. Sci. USA. 79:1982;5818-5822.
12. Gubler U., Hoffman B. J. A simple and very efficient method for generating cDNA libraries. Gene. 25:1983;263-269.
13. Ikeda R., Watanabe E., Watanabe Y., Okada Y. Nucleotide sequence of tobamovirus Ob which can spread systemically in N gene tobacco. J. Gen. Virol. 74:1993;1939-1944.
14. Isomura Y., Matumoto Y., Murayama, Chatani M., Inouye N., Ikegami M. Nucleotide sequence of cell-to-cell transport protein gene of odontoglossum ringspot virus. Nucleic Acids Res. 18:1990;7448.
15. Isomura Y., Matumoto Y., Murayama A., Chatani M., Inouye N., Ikegami M. Molecular cloning, sequencing and expression in Escherichia coli of the odontoglossum ringspot virus coat protein gene. J. Gen. Virol. 72:1991;2247-2249.
16. Jackson R. J. Initiation without an end. Nature. 353:1991;14-15.
17. Jackson R. J., Howell M. T., Kaminski A. The novel mechanism of initiation of picornavirus RNA translation. Trends Biochem. Sci. 15:1990;477-483.
18. Jang S. K., Krausslich H. G., Nicklin M. J. H., Duke G. M., Palmenberg A. C., Wimmer E. A segment of the 5′ untranslated region of encephalomielitis virus RNA directs internal entry of ribosomes during in vitro translation. J. Virol. 62:1988;2636-2643.
19. Kaminski A., Belsham G. J., Jackson R. J. Translation of encephalomyocarditis virus RNA: Parameters influencing the selection of the internal initiation site. EMBO J. 13:1994;1673-1681.
20. Kozak M. Regulation of protein synthesis in virus-infected animal cells. Adv. Virus Res. 31:1986;229-292.
21. Kozak M. The scanning model for translation: An update. J. Mol. Biol. 108:1989;229-241.
22. Lartey R. T., Voss T. C., Melcher U. Completion of a cDNA sequence from a tobamovirus pathogenic to crucifers. Gene. 166:1995;331-332.
23. Le S. Y., Sonenberg N., Maizel J. V. Distinct structural elements and internal entry of ribosomes in mRNA 3 encoded by infectious bronchitis virus. Virology. 198:1994;405-411.
24. Levis C., Astier-Manifacier S. The 5′ untranslated region of PVY RNA even located in an internal position, enables initiation of translation. Virus Genes. 7:1993;367-379.
25. Liu D. X., Inglis S. C. Internal entry of ribosomes on a tricistronic mRNA encoded by infectious bronchitis virus. J. Virol. 66:1992;6143-6154.
26. Macejak D., Sarnow P. Internal initiation of translation mediated by the 5′-leader of a cellular mRNA. Nature. 353:1991;90-94.
27. Meshi T., Ohno T., Iba H., Okada Y. Nucleotide sequence of a cloned cDNA copy of TMV (cowpea strain) RNA, including the assembly origin, the coat protein cistron, and the 3′ non-coding region. Mol. Gen. Genet. 184:1981;20-25.
28. Meshi T., Ohno T., Okada Y. Nucleotide sequence of the 30K protein cistron of cowpea strain of tobacco mosaic virus. Nucleic Acids Res. 10:1982;6111-6117.
29. Morozov S. Y., Miroshnichenko N. A., Zelenina D. A., Fedorkin O. N., Solovjev A. G., Lukasheva L. I., Atabekov J. G. Expression of RNA transcripts of potato virus X full-length and subgenomic RNA. Biochimie. 72:1990;677-684.
30. Oh S. K., Scott M. P., Sarnow P. Homeotic gene Antennapedia mRNA contains 5′-noncoding sequences that confer translational initiation by internal ribosome binding. Genes Dev. 6:1992;1643-1653.
31. Ohno T., Aoyagi M., Yamanashi Y., Saito H., Ikawa S., Meshi T., Okada Y. Nucleotide sequence of the tobacco mosaic virus (tomato strain) genome and comparison with common strain genome. J. Biochem. 96:1984;1915-1923.
32. Pelham H. R. B., Jackson R. J. An efficient mRNA-dependent translation system from reticulocyte lysate. Eur. J. Biochem. 67:1976;247-256.
33. Pelletier J., Sonenberg N. Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA. Nature. 334:1988;320-325.
34. Palukaitis P., Zaitlin M. Tobacco mosaic virus. Infectivity and replication. The Plant Viruses. 1986;Plenum Press. p. 105-131.
35. Reynolds J. E., Kaminski A., Kettinen H. J., Grace K., Clarke B. E., Carroll A. R., Rowlands D. J., Jackson R. J. Unique features of internal initiation of hepatitis C virus RNA translation. EMBO J. 14:1995;6010-6020.
36. Rijnbrand R., Bredenbeek P., van der Straaten T., Whetter L., Inchauspe G., Lemon S., Spaan W. Almost the entire 5′-nontranslated region of hepatitis C virus is required for cap-independent translation. FEBS Lett. 365:1995;115-119.
37. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: a Laboratory Manual. 1989;Cold Spring Harbor Laboratory.
38. Smirnyagina E. V., Morozov S. Yu., Rodionova N. P., Miroshnichenko N. A., Solovyev A. G., Fedorkin O. N., Atabekov J. G. Translational efficiency and competitive ability of mRNAs with 5′-untranslated αβ-leader of potato virus X RNA. Biochimie. 73:1991;998-1011.
39. Solis I., Garcia-Arenal F. The complete nucleotide sequence of the genomic RNA of the tobamovirus tobacco mild green mosaic virus. Virology. 177:1990;553-558.
40. Sonenberg N., Pelletier J. Poliovirus translation: a paradigm for a novel initiation mechanism. Bioessays. 11:1989;128-132.
41. Thomas A. M., ter Haar E., Wellink K., Voorma H. O. Cowpea mosaic virus middle component RNA contains sequence that allows internal binding of ribosomes and that requires eukaryotic initiation factor 4F for optimal translation. J. Virol. 65:1991;2953-2959.
42. Tomashevskaya O. L., Solovyov A. G., Karpova O. V., Fedorkin O. N., Rodionova N. P., Morozov S. Yu., Atabekov J. G. Effects of sequence elements in the potato virus X RNA 5′ non-translated αβ-leader on its translation encancing activity. J. Gen. Virol. 74:1993;2717-1724.
43. Tsukiyama-Kohara K., Iizuka N., Kohara M., Nomoto A. Internal ribosome entry site within hepatitis C virus RNA. J. Virol. 66:1992;1476-1483.
44. Ugaki M., Tomiyama M., Kakutani T., Hidaka S., Kiguchi T., Nagata R., Sato T., Motoyoshi F., Nishiguchi M. The complete nucleotide sequence of cucumber green mottle mosaic virus (SH strain) genomic RNA. J. Gen. Virol. 72:1991;1487-1495.
45. Vaerword T. C., Dekker B. M. M., Hoekema A. A small scale procedure for the rapid isolation of plant RNAs. Nucleic Acids Res. 17:1989;2106.
46. Vagner S., Gensac M.-C., Martel A., Bayard F., Amalric F., Prats H., Prats A.-C. Alternative translation of human fibroblast growth factor 2 mRNA occurs by internal entry of ribosomes. Mol. Cell. Biol. 15:1995a;35-44.
47. Vagner S., Waysbort A., Marenda M., Gensac M.-C., Amalric F., Prats A.-C. Alternative translation initiation of the Moloney murine leukemia virus mRNA controlled by internal ribosome entry involving the p57/PTB splicing factor. J. Biol. Chem. 270:1995b;20376-20383.
48. Vittorioso P., Carattoli A., Londei P., Macino C. Internal translational initiation in the mRNA from the Neurospora crassa Albino-3 gene. J. Biol. Chem. 269:1994;26650-26654.
49. Wang C., Sarnow P., Siddiqui A. Translation of human hepatitis C virus RNA is mediated by an internal ribosome binding mechanism. J. Virol. 67:1993;3338-3344.
50. Wimmer E., Hellen C. U. T., Cao X. Genetics of poliovirus. Annu. Rev. Genet. 27:1993;353-436.