-
1
-
-
0001022017
-
On weighting and congruence
-
ALLARD, M. W., AND J. M. CARPENTER. 1996. On weighting and congruence. Cladistics 12:183-198.
-
(1996)
Cladistics
, vol.12
, pp. 183-198
-
-
Allard, M.W.1
Carpenter, J.M.2
-
2
-
-
0019983804
-
Complete sequences of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome
-
ANDERSON S., M. H. DE BRUIJN, A. R. COULSON, I. C. EPERON, F. SANGER, AND I. G. YOUNG. 1982. Complete sequences of bovine mitochondrial DNA: Conserved features of the mammalian mitochondrial genome. J. Mol. Biol. 156:683-717.
-
(1982)
J. Mol. Biol.
, vol.156
, pp. 683-717
-
-
Anderson, S.1
De Bruijn, M.H.2
Coulson, A.R.3
Eperon, I.C.4
Sanger, F.5
Young, I.G.6
-
3
-
-
0027367015
-
Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature
-
ARNASON, U., AND A. GULLBERG. 1993. Comparison between the complete mtDNA sequences of the blue and the fin whale, two species that can hybridize in nature. J. Mol. Evol. 37:312-322.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 312-322
-
-
Arnason, U.1
Gullberg, A.2
-
4
-
-
0027360057
-
The nucleotide sequence of the mitochondrial DNA molecule of the grey seal, Halichoerus grypus, and a comparison with mitochondrial sequences of other true seals
-
ARNASON, U., A. GULLBERG, E. JOHNSSON, AND C. LEDJE. 1993. The nucleotide sequence of the mitochondrial DNA molecule of the grey seal, Halichoerus grypus, and a comparison with mitochondrial sequences of other true seals. J. Mol. Evol. 37:323-330.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 323-330
-
-
Arnason, U.1
Gullberg, A.2
Johnsson, E.3
Ledje, C.4
-
5
-
-
0026332751
-
The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus
-
ARNASON, U., A. GULLBERG, AND B. WIDEGREN. 1991. The complete nucleotide sequence of the mitochondrial DNA of the fin whale, Balaenoptera physalus. J. Mol. Evol. 33:556-568.
-
(1991)
J. Mol. Evol.
, vol.33
, pp. 556-568
-
-
Arnason, U.1
Gullberg, A.2
Widegren, B.3
-
6
-
-
0026717198
-
The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina
-
ARNASON, U., AND E. JOHNSSON. 1992. The complete mitochondrial DNA sequence of the harbor seal, Phoca vitulina. J. Mol. Evol. 34:493-505.
-
(1992)
J. Mol. Evol.
, vol.34
, pp. 493-505
-
-
Arnason, U.1
Johnsson, E.2
-
7
-
-
0019837699
-
Sequence and gene organization of mouse mitochondrial DNA
-
BIBB, M. J., R. A. VAN ETTEN, C. T. WRIGHT, M. W. WALBERG, AND D. A. CLAYTON. 1981. Sequence and gene organization of mouse mitochondrial DNA. Cell 26:167-180.
-
(1981)
Cell
, vol.26
, pp. 167-180
-
-
Bibb, M.J.1
Van Etten, R.A.2
Wright, C.T.3
Walberg, M.W.4
Clayton, D.A.5
-
8
-
-
12044257391
-
Partitioning and combining data in phylogenetic analysis
-
BULL, J. J., J. P. HUELSENBECK, C. W. CUNNINGHAM, D. L. SWOFFORD, AND P. J. WADDELL. 1993. Partitioning and combining data in phylogenetic analysis. Syst. Biol. 42:384-397.
-
(1993)
Syst. Biol.
, vol.42
, pp. 384-397
-
-
Bull, J.J.1
Huelsenbeck, J.P.2
Cunningham, C.W.3
Swofford, D.L.4
Waddell, P.J.5
-
9
-
-
0029096506
-
Sampling properties of DNA sequence data in phylogenetic analysis
-
CUMMINGS, M. P., S. P. OTTO, AND J. WAKELEY. 1995. Sampling properties of DNA sequence data in phylogenetic analysis. Mol. Biol. Evol. 12:814-822.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 814-822
-
-
Cummings, M.P.1
Otto, S.P.2
Wakeley, J.3
-
10
-
-
0031224810
-
Is congruence between partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods
-
CUNNINGHAM, C. W. 1997. Is congruence between partitions a reliable predictor of phylogenetic accuracy? Empirically testing an iterative procedure for choosing among phylogenetic methods. Syst. Biol. 46:464-478.
-
(1997)
Syst. Biol.
, vol.46
, pp. 464-478
-
-
Cunningham, C.W.1
-
11
-
-
0028963294
-
The relationship between parsimony and maximum likelihood analyses: Tree scores and confidence estimates
-
DEBRY, R. W., AND L. G. ABELE. 1995. The relationship between parsimony and maximum likelihood analyses: Tree scores and confidence estimates. Mol. Biol. Evol. 12:291-297.
-
(1995)
Mol. Biol. Evol.
, vol.12
, pp. 291-297
-
-
Debry, R.W.1
Abele, L.G.2
-
12
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
13
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
FELSENSTEIN, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39:783-791.
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
14
-
-
0024352214
-
The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: Cryptic signals revealed by comparative analysis between vertebrates
-
GADALETA, G., G. PEPE, G. DE CANDIA, C. QUAGLIARIELLO, E. SBISA, AND C. SACCONE. 1989. The complete nucleotide sequence of the Rattus norvegicus mitochondrial genome: Cryptic signals revealed by comparative analysis between vertebrates. J. Mol. Evol. 28:497-516.
-
(1989)
J. Mol. Evol.
, vol.28
, pp. 497-516
-
-
Gadaleta, G.1
Pepe, G.2
De Candia, G.3
Quagliariello, C.4
Sbisa, E.5
Saccone, C.6
-
15
-
-
0021003230
-
Estimates of DNA and protein sequence divergence: An examination of some assumptions
-
GOLDING, G. B. 1983. Estimates of DNA and protein sequence divergence: An examination of some assumptions. Mol. Biol. Evol. 1:125-142.
-
(1983)
Mol. Biol. Evol.
, vol.1
, pp. 125-142
-
-
Golding, G.B.1
-
16
-
-
0027526039
-
Statistical tests of models of DNA substitution
-
GOLDMAN, N. 1993. Statistical tests of models of DNA substitution. J. Mol. Evol. 36:182-198.
-
(1993)
J. Mol. Evol.
, vol.36
, pp. 182-198
-
-
Goldman, N.1
-
17
-
-
0031157173
-
Correlation of functional domains and rates of nucleotide substitution in cytochrome b
-
GRIFFITHS, C. S. 1997. Correlation of functional domains and rates of nucleotide substitution in cytochrome b. Mol. Phylogenet. Evol. 7:352-365.
-
(1997)
Mol. Phylogenet. Evol.
, vol.7
, pp. 352-365
-
-
Griffiths, C.S.1
-
18
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., H. KISHINO, AND T. YANO. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
19
-
-
0021017159
-
The spatial distribution of fixed mutations within genes coding for proteins
-
HOLMQUIST, R., M. GOODMAN, T. CONROY, AND J. CZELUSNIAK. 1983. The spatial distribution of fixed mutations within genes coding for proteins. J. Mol. Evol. 19:137-148.
-
(1983)
J. Mol. Evol.
, vol.19
, pp. 137-148
-
-
Holmquist, R.1
Goodman, M.2
Conroy, T.3
Czelusniak, J.4
-
20
-
-
0028894410
-
Recent african origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs
-
HORAI, S., K. HAYASAKA, R. KONDO, K. TSUGANE, AND N. TAKAHATA. 1995. Recent African origin of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc. Natl. Acad. Sci. USA 92:532-536.
-
(1995)
Proc. Natl. Acad. Sci. USA
, vol.92
, pp. 532-536
-
-
Horai, S.1
Hayasaka, K.2
Kondo, R.3
Tsugane, K.4
Takahata, N.5
-
21
-
-
0028270434
-
The marsupial mitochondrial genome and the evolution of placental mammals
-
JANKE, A., G. FELDMAIER-FUCHS, W. K. THOMAS, A. VON HAESELER, AND S. PÄÄBO. 1994. The marsupial mitochondrial genome and the evolution of placental mammals. Genetics 137:243-256.
-
(1994)
Genetics
, vol.137
, pp. 243-256
-
-
Janke, A.1
Feldmaier-Fuchs, G.2
Thomas, W.K.3
Von Haeseler, A.4
Pääbo, S.5
-
22
-
-
0031026266
-
The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria
-
JANKE, A., X. XU, AND U. ARNASON. 1997. The complete mitochondrial genome of the wallaroo (Macropus robustus) and the phylogenetic relationship among Monotremata, Marsupialia, and Eutheria. Proc. Natl. Acad. Sci. USA 94:1276-1281.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 1276-1281
-
-
Janke, A.1
Xu, X.2
Arnason, U.3
-
23
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
24
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
-
KISHINO, H., AND HASEGAWA, M. 1989. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:170-179.
-
(1989)
J. Mol. Evol.
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
25
-
-
0029960344
-
Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates
-
KUMAR, S. 1996. Patterns of nucleotide substitution in mitochondrial protein coding genes of vertebrates. Genetics 143:537-548.
-
(1996)
Genetics
, vol.143
, pp. 537-548
-
-
Kumar, S.1
-
26
-
-
0030001769
-
Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome
-
LOPEZ, J. V., S. CEVARIO, AND S. J. O'BRIEN. 1996. Complete nucleotide sequences of the domestic cat (Felis catus) mitochondrial genome and a transposed mtDNA tandem repeat (Numt) in the nuclear genome. Genomics 33:229-246.
-
(1996)
Genomics
, vol.33
, pp. 229-246
-
-
Lopez, J.V.1
Cevario, S.2
O'Brien, S.J.3
-
27
-
-
12044256641
-
A congruence test of reliability using linked mitochondrial DNA sequences
-
MIYAMOTO, M. M., M. W. ALLARD, R. M. ADKINS, L. L. JANECEK, AND R. L. HONEYCUTT. 1994. A congruence test of reliability using linked mitochondrial DNA sequences. Syst. Biol. 43:236-249.
-
(1994)
Syst. Biol.
, vol.43
, pp. 236-249
-
-
Miyamoto, M.M.1
Allard, M.W.2
Adkins, R.M.3
Janecek, L.L.4
Honeycutt, R.L.5
-
28
-
-
11944269526
-
Testing species phylogenies and phylogenetic methods with congruence
-
MIYAMOTO, M. M., AND W. M. FITCH. 1995. Testing species phylogenies and phylogenetic methods with congruence. Syst. Biol. 44:64-76.
-
(1995)
Syst. Biol.
, vol.44
, pp. 64-76
-
-
Miyamoto, M.M.1
Fitch, W.M.2
-
29
-
-
0030762484
-
Structural biology and phylogenetic estimation
-
NAYLOR, G. J. P., AND W. M. BROWN. 1997. Structural biology and phylogenetic estimation. Nature 388:527-528.
-
(1997)
Nature
, vol.388
, pp. 527-528
-
-
Naylor, G.J.P.1
Brown, W.M.2
-
30
-
-
0026557719
-
Mammalian phylogeny: Shaking the tree
-
NOVACEK, M. 1992. Mammalian phylogeny: Shaking the tree. Nature 356:121-125.
-
(1992)
Nature
, vol.356
, pp. 121-125
-
-
Novacek, M.1
-
31
-
-
0030076123
-
Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene
-
PORTER, C. A., M. GOODMAN, AND M. J. STANHOPE. 1996. Evidence on mammalian phylogeny from sequences of exon 28 of the von Willebrand factor gene. Mol. Phylogenet. Evol. 5:89-101.
-
(1996)
Mol. Phylogenet. Evol.
, vol.5
, pp. 89-101
-
-
Porter, C.A.1
Goodman, M.2
Stanhope, M.J.3
-
32
-
-
0002015259
-
The principles of classification and a classification of the mammals
-
SIMPSON, G. G. 1945. The principles of classification and a classification of the mammals. Bull. Am. Mus. Nat. Hist. 85:1-350.
-
(1945)
Bull. Am. Mus. Nat. Hist.
, vol.85
, pp. 1-350
-
-
Simpson, G.G.1
-
33
-
-
0032087258
-
Highly congruent molecular support for a diverse superordinal clade of endemic African mammals
-
STANHOPE, M. J., O. MADSEN, V. G. WADDELL, G. C. CLEVEN, W. W. DE JONG, AND M. S. SPRINGER. 1998. Highly congruent molecular support for a diverse superordinal clade of endemic African mammals. Mol. Phylogenet. Evol. 9:501-508.
-
(1998)
Mol. Phylogenet. Evol.
, vol.9
, pp. 501-508
-
-
Stanhope, M.J.1
Madsen, O.2
Waddell, V.G.3
Cleven, G.C.4
De Jong, W.W.5
Springer, M.S.6
-
34
-
-
0029785077
-
Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: Convincing evidence for several superordinal clades
-
STANHOPE, M. J., M. R. SMITH, V. G. WADDELL, C. A. PORTER, M. S. SHIVJI, AND M. GOODMAN, 1996. Mammalian evolution and the interphotoreceptor retinoid binding protein (IRBP) gene: Convincing evidence for several superordinal clades. J. Mol. Evol. 43:83-92.
-
(1996)
J. Mol. Evol.
, vol.43
, pp. 83-92
-
-
Stanhope, M.J.1
Smith, M.R.2
Waddell, V.G.3
Porter, C.A.4
Shivji, M.S.5
Goodman, M.6
-
35
-
-
0029880314
-
The effect of topology on estimates of among-site rate variation
-
SULLIVAN, J., K. E. HOLSINGER, AND C. SIMON. 1996. The effect of topology on estimates of among-site rate variation. J. Mol. Evol. 42:308-312.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 308-312
-
-
Sullivan, J.1
Holsinger, K.E.2
Simon, C.3
-
37
-
-
0029985399
-
Combining protein evolution and secondary structure
-
THORNE, J. L., N. GOLDMAN, AND D. T. JONES. 1996. Combining protein evolution and secondary structure. Mol. Biol. Evol. 13:666-673.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 666-673
-
-
Thorne, J.L.1
Goldman, N.2
Jones, D.T.3
-
38
-
-
0015219691
-
Fitting discrete probability distributions to evolutionary events
-
UZZEL, T., AND K. W. CORBIN. 1971. Fitting discrete probability distributions to evolutionary events. Science 172:1089-1096.
-
(1971)
Science
, vol.172
, pp. 1089-1096
-
-
Uzzel, T.1
Corbin, K.W.2
-
39
-
-
0031297695
-
General time-reversable distances with unequal rates across sites: Mixing F and inverse Gaussian distributions with invariant sites
-
WADDELL, P. J., AND M. A. STEEL. 1997. General time-reversable distances with unequal rates across sites: Mixing F and inverse Gaussian distributions with invariant sites. Mol. Phylogenet. Evol. 8:398-414.
-
(1997)
Mol. Phylogenet. Evol.
, vol.8
, pp. 398-414
-
-
Waddell, P.J.1
Steel, M.A.2
-
40
-
-
0027496790
-
Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA
-
WAKELEY, J. 1993. Substitution rate variation among sites in hypervariable region I of human mitochondrial DNA. J. Mol. Evol. 37:613-623.
-
(1993)
J. Mol. Evol.
, vol.37
, pp. 613-623
-
-
Wakeley, J.1
-
41
-
-
0028132144
-
The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region
-
XU, X., AND U. ARNASON. 1994. The complete mitochondrial DNA sequence of the horse, Equus caballus: Extensive heteroplasmy of the control region. Gene 148:357-362.
-
(1994)
Gene
, vol.148
, pp. 357-362
-
-
Xu, X.1
Arnason, U.2
-
42
-
-
0031110217
-
The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis
-
XU, X., AND U. ARNASON. 1997. The complete mitochondrial DNA sequence of the white rhinoceros, Ceratotherium simum, and comparison with the mtDNA sequence of the Indian rhinoceros, Rhinoceros unicornis. Mol. Phylogenet. Evol. 7:189-194.
-
(1997)
Mol. Phylogenet. Evol.
, vol.7
, pp. 189-194
-
-
Xu, X.1
Arnason, U.2
-
43
-
-
0029907541
-
The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea)
-
XU, X., A. JANKE, AND U. ARNASON. 1996. The complete mitochondrial DNA sequence of the greater Indian rhinoceros, Rhinoceros unicornis, and the phylogenetic relationship among Carnivora, Perissodactyla, and Artiodactyla (+ Cetacea). Mol. Biol. Evol. 13:1167-1173.
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 1167-1173
-
-
Xu, X.1
Janke, A.2
Arnason, U.3
-
44
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
YANG, Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods. J. Mol. Evol. 39:306-314.
-
(1994)
J. Mol. Evol.
, vol.39
, pp. 306-314
-
-
Yang, Z.1
-
45
-
-
0029970097
-
Maximum likelihood models for combined analyses of multiple sequence data
-
YANG, Z. 1996. Maximum likelihood models for combined analyses of multiple sequence data. J. Mol. Evol. 42:587-596.
-
(1996)
J. Mol. Evol.
, vol.42
, pp. 587-596
-
-
Yang, Z.1
-
47
-
-
0028267146
-
Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation
-
YANG, Z., N. GOLDMAN, AND A. E. FRIDAY. 1994. Comparison of models for nucleotide substitution used in maximum likelihood phylogenetic estimation. Mol. Biol. Evol. 11:316-324.
-
(1994)
Mol. Biol. Evol.
, vol.11
, pp. 316-324
-
-
Yang, Z.1
Goldman, N.2
Friday, A.E.3
|