Isolated transmembrane helices arranged across a membrane: Computational studies

Protein Engineering

Volumn 12, Issue 4, 1999, Pages 305-311

  Tseitin, Vladimir M ^a   Nikiforovich, Gregory V ^a  

^a WASHINGTON UNIVERSITY   (United States)

Author keywords

Energy calculations; Helix membrane interaction; Transmembrane proteins; helix

Indexed keywords

BACTERIORHODOPSIN; CYTOCHROME C OXIDASE; MEMBRANE PROTEIN; OCTANOL; WATER;

ACCURACY; ARTICLE; BLASTOCHLORIS VIRIDIS; CALCULATION; CONTROLLED STUDY; ENERGY; PARACOCCUS DENITRIFICANS; PHOTOSYNTHESIS; PRIORITY JOURNAL; SOLVATION; STATISTICAL ANALYSIS;

BLASTOCHLORIS VIRIDIS; NEGIBACTERIA; PARACOCCUS DENITRIFICANS; RHODOPSEUDOMONAS;

EID: 0032925194     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/12.4.305     Document Type: Article

References (32)

1. Baldwin, J.M. (1993) EMBO J., 12, 1693-1703.
2. Baldwin, J.M., Schertler, G.F.X. and Unger, V.M. (1997) J. Mol. Biol., 272, 144-164.
3. Cserzö, M., Bernassau, J.-M., Simon, I. and Maigret, B. (1994) J. Mol. Biol., 243, 388-396.
4. Deisenhofer, J., Epp, O., Sinning, I. and Michel, H. (1995) J. Mol. Biol., 246, 429-457.
5. Deisenhofer, J. and Michel, H. (1989) Science, 245, 1463-1473.
6. Donnelly, D. and Findlay, J.B.C. (1994) Curr. Opin. Struct. Biol., 4, 582-589.
7. Faranbakhsh, Z.T., Ridge, K.D., Khorana, H.G. and Hubbel, W.L. (1995) Biochemistry, 34, 8812-8819.
8. Galaktionov, S.G. and Marshall, G.R. (1993) Biophys. J., 65, 608-617.
9. Grice, A.L., Kerr, I.D. and Sansom, M.S.P. (1997) FEBS Lett., 405, 299-304.
10. Henderson, R., Baldwin, J. M., Ceska, T.A., Zemlin, F., Beckmann, E. and Downing, K.H. (1990) J. Mol. Biol., 213, 899-929.
11. Hopfinger, A.J. (1973) Conformational Properties of Macromolecules. Academic Press, New York.
12. Hopfinger, A.J. and Battershell, R.D. (1976) J. Med. Chem., 19, 569-573.
13. Iwata, S., Ostermeier, C., Ludwig, B. and Michel, H. (1995) Nature, 376, 660-669.
14. Juffer, A.H., Eisenhaber, F., Hubbard, S.J., Walther, D. and Argos, P. (1995) Protein Sci., 4, 2499-2509.
15. Manoil, C. and Beckwith, J. (1986) Science, 233, 1403-1408.
16. Nikiforovich, G.V. (1998) Protein Engng, 11, 279-283.
17. Nikiforovich, G.V., Hruby, V.J., Prakash, O. and Gehrig, C.A. (1991) Biopolymers, 31, 941-955.
18. Nikiforovich, G.V., Galaktionov, S., Tseitin, V.M., Lowis, D.R., Shenderovich, M.D. and Marshall, G.R. (1998) Lett. Pept. Sci., 5, 413-415.
19. Nolde, D.E., Arseniev, A.S., Vergoten, G. and Efremov, R.G. (1997) J. Biomol. Struct. Dyn., 15, 1-18.
20. Pebay-Peyroula, E., Rummel, G., Rosenbush, J.P. and Landau, E.M. (1997) Science, 277, 1676-1681.
21. Reithmeier, R.A.F. (1995) Curr. Opin. Struct. Biol., 5, 491-500.
22. Riley, M.L., Wallace, B.A., Flitsch, S.L. and Booth, P.J. (1997) Biochemistry, 36, 192-196.
23. Rost, B., Casadio, R., Fariselli, P. and Sander, C. (1995) Protein Sci., 4, 521-533.
24. Schertler, G.F., Villa, C. and Henderson, R. (1993) Nature, 362, 770-772.
25. Shen, L., Bassolino, D. and Stouch, T. (1997) Biophys. J., 73, 3-20.
26. Sonar, S., Lee, C.-P., Coleman, M., Patel, N., Liu, X., Marti, T., Khorana, G.G., RajBhandary, U.L. and Rothschild, K.J. (1994) Struct. Biol., 1, 512-517.
27. Tuffery, P., Etchebest, C., Popot, J.L. and Lavery, R. (1994) J. Mol. Biol., 236, 1093-1104.
28. Turcatti, G., Vogel, H. and Chollet, A. (1995) Biochemistry, 34, 3972-3980.
29. von Heijne, G. (1994) Annu. Rev. Biophys. Biomol. Struct., 23, 167-192.
30. Xia, D., Yu, C.-A., Kim, H., Xia, J.-Z., Kachurin, A.M., Zhang, L., Yu, L. and Deisenhofer, J. (1997) Science, 277, 60-66.
31. Yamaguchi, S., Tuzi, S., Seki, T., Tanio, M., Needleman, R., Lanyi, J.K., Naito, A. and Saito, H. (1998) J. Biochem., 123, 78-86.
32. Yanagihara, N., Suwa, M. and Mitaku, S. (1989) Biophys. Chem., 34, 69-77.