Role of Escherichia coli histone-like nucleoid-structuring protein in bacterial metabolism and stress response - Identification of targets by two-dimensional electrophoresis

European Journal of Biochemistry

Volumn 244, Issue 3, 1997, Pages 767-773

  Laurent Winter, Christine ^a   Ngo, Saravuth ^a   Danchin, Antoine ^a   Bertin, Philippe ^a  

^a INSTITUT PASTEUR   (France)

Author keywords

Histone like nucleoid structuring protein; Metabolism regulator; Molecular chaperone; Stress response; Two dimensional electrophoresis

Indexed keywords

CHAPERONE; HEAT SHOCK PROTEIN; HISTONE;

ARTICLE; BACTERIAL METABOLISM; BACTERIAL VIRULENCE; ESCHERICHIA COLI; GENE EXPRESSION; GENE MUTATION; NONHUMAN; PLEIOTROPY; PRIORITY JOURNAL; PROTEIN SYNTHESIS; STRESS; TWO DIMENSIONAL ELECTROPHORESIS;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI;

EID: 0030983671     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1432-1033.1997.00767.x     Document Type: Article

References (55)

1. Altschul, W., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) Basic local alignment search tool, J. Mol. Biol. 215, 403-410.
2. Appel, R. D., Bairoch, A., Sanchez, J. C., Vargas, J. R., Golaz, O., Pasquali, C. & Hochstrasser, D. F. (1996) Federated two-dimensional electrophoresis database: a simple means of publishing two-dimensional electrophoresis data, Electrophoresis 17, 540-546.
3. Barron, A., May, G., Bremer, E. & Villarejo, M. (1986) Regulation of envelope protein composition during adaptation to osmotic stress in Escherichia coli, J. Bacteriol. 167, 433-438.
4. Barron, A., Jung, J. U. & Villarejo, M. (1987) Purification and characterization of a glycine betaine binding protein from Escherichia coli, J. Biol. Chem. 262, 11841-11846.
5. s-dependent genes in Escherichia coli, J. Bacteriol. 177, 3455-3464.
6. Bertin, P., Lejeune, P., Laurent-Winter, C. & Danchin, A. (1990) Mutations in bglY, the structural gene for the DNA-binding protein H1, affect expression of several Escherichia coli genes, Biochimie (Paris) 72, 889-891.
7. Bertin, P., Terao, E., Lee, E. H., Lejeune, P., Colson, C., Danchin, A. & Collatz, E. (1994) The H-NS protein is involved in the biogenesis of flagella in Escherichia coli, J. Bacteriol. 176, 5537-5540.
8. Biville, F., Laurent-Winter, C. & Danchin, A. (1996) In vivo positive effects of exogenous pyrophosphate on Escherichia coli cell growth and stationary phase survival, Res. Microbiol. 147, 597-608.
9. Bradford, M. M. (1976) A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding, Anal. Biochem. 72, 248-254.
10. Bruni, C. B., Colantuoni, V., Sbordone, L., Cortese, R. & Blasi, F. (1977) Biochemical and regulatory properties of Escherichia coli K-12 HisT mutants, J. Bacteriol. 130, 4-10.
11. Calvo, J. M. & Matthews, R. (1994) The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli, Microbiol. Rev. 58, 466-490.
12. Colonna, B., Casalino, M., Fradiani, P. A., Zagaglia, C., Naitza, S., Leoni, L., Prosseda, G., Coppo, A., Ghelardini, P. & Nicoletti, M. (1995) H-NS regulation of virulence gene expression in enteroinvasive Escherichia coli harboring the virulence plasmid integrated into the host chromosome, J. Bacteriol. 177, 4703-4712.
13. Deretic, V., Philipp, W., Dhandayuthapani, S., Mudd, M. H., Curcic, R., Garbe, T., Heym, B., Via, L. E. & Cole, S. T. (1995) Mycobacterium tuberculosis is a natural mutant with an inactivated oxydative-stress regulatory gene: implications for sensitivity to isoniazid, Mol. Microbiol. 17, 889-900.
14. Dorman, C. J., Ni Bhriain, N. & Higgins, C. F. (1990) DNA supercoiling and environmental regulation of virulence gene expression in Shigella flexneri, Nature 344, 789-792.
15. Ernsting, B. R., Atkinson, M. R., Ninfa, A. J. & Matthews, R. G. (1992) Characterization of the regulon controlled by the leucine-responsive regulatory protein in Escherichia coli, J. Bacteriol. 174, 1109-1118.
16. Garrels, J. I. (1983) Qantitative two-dimensional gel electrophoresis of proteins, Methods Enzymol. 100, 411-423.
17. Georgopoulos, C., Liberek, K., Zylicz, M. & Ang, D. (1994) Properties of the heat shock proteins of Escherichia coli and the autoregulation of the heat shock response, in The biology of heat shock proteins and molecular chaperones (Morimoto, R. I., Tissières, A. & Georgopoulos, C., eds) pp. 209-250, Cold Spring Harbor Laboratory Press, Cold Spring Harbor NY.
18. Gonzalez-Gil, G., Bringmann, P. & Kahmann, R. (1996) FIS is a regulator of metabolism in Escherichia coli, Mol. Microbiol. 22, 21-29.
19. Graeme-Cook, K. A., May, G., Bremer, E. & Higgins, C. F. (1989) Osmotic regulation of porin expression: a role for DNA supercoiling, Mol. Microbiol. 3, 1287-1294.
20. Harrison, J. A., Pickard, D., Higgins, C. F., Khan, A., Chatfield, S. N., Ali, T., Dorman, C. J., Hormaeche, C. E. & Dougan, G. (1994) Role of hns in the virulence phenotype of pathogenic salmonellae, Mol. Microbiol. 13, 133-140.
21. Hecker, M., Schumann, W. & Völker, U. (1996) Heat-shock and general stress response in Bacillus subtilis, Mol. Microbiol. 19, 417-428.
22. Higgins, C. F., Dorman, C. J., Stirling, D. A., Waddell, L., Booth, I. R., May, G. & Bremer, E. (1988) A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli, Cell 52, 569-584.
23. Hinton, J. C. D., Santos, D. S., Seirafi, A., Hulton, C. S. J., Pavitt, G. D. & Higgins, C. F. (1992) Expression and mutational analysis of the nucleoid-associated protein H-NS of Salmonella typhimurium, Mol. Microbiol. 6, 2327-2337.
24. Hultgren, S. J., Abraham, S., Caparon, M., Falk, P., Geme, J. W. St III & Normark, S. (1993) Pilus and nonpilus bacterial adhesins: assembly and function in cell recognition, Cell 73, 887-901.
25. Jacquet, M., Cukier-Kahn, R., Pla, J. & Gros, F. (1971) A thermostable protein factor acting on in vitro DNA transcription, Biochem. Biophys. Res. Commun. 45, 1597-1607.
26. Jenkins, D. E., Auger, E. A. & Matin, A. (1991) Role of RpoH, a heat shock regulator protein, in Escherichia coli carbon starvation protein synthesis and survival, J. Bacteriol. 173, 1992-1996.
27. Karow, M. & Georgopoulos, C. (1991) Sequencing, mutational analysis, and transcriptional regulation of the Escherichia coli htrB gene, Mol. Microbiol. 5, 2285-2292.
28. Kawula, T. H. & Lelivelt, M. J. (1994) Mutations in a gene encoding a new hsp70 suppress rapid DNA inversion and bgl activation, but not proU derepression, in hns-1 mutant Escherichia coli, J. Bacteriol. 176, 610-619.
29. Laurent-Winter, C., Lejeune, P. & Danchin, A. (1995) The Escherichia coli DNA-binding protein H-NS is one of the first proteins to be synthesized after a nutritional upshift, Res. Microbiol. 146, 5-16.
30. Levinthal, M., Lejeune, P. & Danchin, A. (1994) The H-NS protein modulates the activation of the ilvIH operon of Escherichia coli K12 by Lrp, the leucine regulatory protein, Mol. Gen. Genet. 242, 736-743.
31. McCleary, W. R. & Stock, J. B. (1994) Acetyl phosphate and the activation of two-component response regulators, J. Biol. Chem. 269, 31567-31572.
32. May, G., Dersch, P., Haardt, M., Middendorf, A. & Bremer, E. (1990) The osmZ (bglY) gene encodes the DNA-binding protein H-NS (H1a), a component of the Escherichia coli K12 nucleoid, Mol. Gen. Genet. 224, 81-90.
33. Miller, J. F. (1972) Experiments in molecular genetics, Cold Spring Harbor Laboratory, Cold Spring Harbor NY.
34. Nyström, T. (1994) Role of guanosine tetraphosphate in gene expression and the survival of glucose or seryl-tRNA starved cells of Escherichia coli K12, Mol. Gen. Genet. 245, 355-362.
35. Nyström, T. (1995) Glucose starvation stimulon of Escherichia coli: role of integration host factor in starvation survival and growth phase-dependent protein synthesis, J. Bacteriol. 177, 5707-5710.
36. Nyström, T. & Neidhardt, F. C. (1996) Effects of overproducing the universal stress protein, UspA, in Escherichia coli K-12, J. Bacteriol. 178, 927-930.
37. Oshima, T., Ito, K., Kabayama, H. & Nakamura, Y. (1995) Regulation of lrp gene expression by H-NS and Lrp proteins in Escherichia coli: dominant negative mutations in lrp, Mol. Gen. Genet. 247, 521-528.
38. Pasquali, C., Frutiger, S., Wilkins, M. R., Hughes, G. J., Appel, R. D., Bairoch, A., Schaller, D., Sanchez, J. C. & Hochstrasser, D. E. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: The Escherichia coli SWISS-2DPAGE database, Electrophoresis 17, 547-555.
39. Prüss, B. M. & Wolfe, A. J. (1994) Regulation of acetyl phosphate synthesis and degradation, and the control of flagellar expression in Escherichia coli, Mol. Microbiol. 12, 973-984.
40. Qi, S. Y., Li, Y., Szyroki, A., Giles, I. G., Moir, A. & O'Connor, C. D. (1995) Salmonella typhimurium responses to a bactericidal protein from human neutrophils, Mol. Microbiol. 17, 523-531.
41. Quadroni, M., Staudenmann, W., Kertesz, M. & James, P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli, Eur. J. Biochem. 239, 773-781.
42. Saier, M. H. Jr, Straud, H., Massman, L. S., Judice, J. J., Newman, M. J. & Feucht, B. U. (1978) Permease-specific mutations in Salmonella typhymurium and Escherichia coli that release the glycerol, maltose, melibiose, and lactose transport systems from regulation by the phosphoenolpyruvate:sugar phosphotransferase system, J. Bacteriol. 133, 1358-1367.
43. Shin, S. & Park, C. (1995) Modulation of flagellar expression in Escherichia coli by acetyl phosphate and the osmoregulator OmpR, J. Bacteriol. 177, 4696-4702.
44. Spassky, A., Rimsky, S., Garreau, H. & Buc, H. (1984) H1a, an E. coli DNA-binding protein which accumulates in stationary phase, strongly compacts DNA in vitro, Nucleic. Acids. Res. 12, 5321-5340.
45. Throup, J. P., Camara, M., Briggs, G. S., Winson, M. K., Chhabra, S. R., Bycroft, B. W., Williams, P. & Stewart, G. S. A. B. (1995) Characterisation of the yenI/yenR locus from Yersinia enterocolitica mediating the synthesis of two N-acylhomoserine lactone signal molecules, Mol. Microbiol. 17, 345-356.
46. Touati, E., Laurent-Winter, C., Quillardet, P. & Hoffnung, M. (1996) Global response of Escherichia coli cells to a treatment with 7-metoxy-2-nitronaphto [2, 1b] furan (R7000), an extremely potent mutagen, Mutation Res. 349, 193-200.
47. Ussery, D. W., Hinton, J. C. D., Jordi, B. J. A. M., Granum, P. E., Seirafi, A., Stephen, R. J., Tupper, A. E., Berridge, G., Sidebotham, J. M. & Higgins, C. F. (1994) The chromatin-associated protein H-NS, Biochimie (Paris) 76, 968-980.
48. Van Bogelen, R. A., Abshire, K. Z., Pertsemlidis, A., Clark, R. L. & Neidhardt, F. C. (1996) Gene-protein database of Escherichia coli K-12, edition 6, in Escherichia coli and Salmonella: cellular and molecular biology (Neidhardt, F. C., Curtis, R. III, Ingraham, J. L., Lin, E. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. & Umbarger, H. E., eds) pp. 2067-2117, 2nd edn, ASM Press, Washington DC.
49. Walkup, L. K. B. & Kogoma, T. (1989) Escherichia coli proteins inducible by oxydative stress mediated by the superoxyde radical, J. Bacteriol. 171, 1476-1484.
50. Welch, T. J., Farewell, A., Neidhardt, F. C. & Bartlett, D. H. (1993) Stress response of Escherichia coli to elevated hydrostatic pressure, J. Bacteriol. 175, 7170-7177.
51. Yamada, H., Muramatsu, S. & Mizuno, T. (1990) An Escherichia coli protein that preferentially binds to sharply curved DNA, J. Biochem. (Tokyo) 108, 420-425.
52. Yamada, H., Yoshida, T., Tanaka, K., Sasakawa, C. & Mizuno, T. (1991) Molecular analysis of the Escherichia coli hns gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences, Mol. Gen. Genet. 230, 332-336.
53. s, in Escherichia coli: involvement of the nucleoid protein H-NS, EMBO J. 14, 594-602.
54. Yoshida, T., Yamashino, T., Ueguchi, C. & Mizuno, T. (1993) Expression of the Escherichia coli dimorphic glutamic acid decarboxylases is regulated by the nucleoid protein H-NS, Biosci. Biotechnol. Biochem. 57, 1568-1569.
55. Zhang, A., Rimsky, S., Reaban, M. E., Buc, H. & Belfort, M. (1996) Escherichia coli protein analogs StpA and H-NS: regulatory loops, similar and disparate effects on nucleic acid dynamics, EMBO J. 15, 1340-1349.