Twelve microsatellite markers for characterization of Plasmodium falciparum from finger-prick blood samples

Parasitology

Volumn 119, Issue 2, 1999, Pages 113-125

  Anderson, T J C ^a,d   Su, Xin Zhuan ^b   Bockarie, M ^c   Lagog, M ^c   Day, K P ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES   (United States)

^c PAPUA NEW GUINEA INSTITUTE OF MEDICAL RESEARCH   (Papua New Guinea)

^d SOUTHWEST FOUNDATION FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

Heterozygosity; Microsatellite; Plasmodium falciparum

Indexed keywords

DNA MARKER; DNA POLYMERASE; MICROSATELLITE DNA; PRIMER DNA; REAGENT;

ARTICLE; BLOOD SAMPLING; CLINICAL TRIAL; COMPUTER PROGRAM; CONTROLLED CLINICAL TRIAL; CONTROLLED STUDY; DEVICE; GENOTYPE; HETEROZYGOSITY; HUMAN; MAJOR CLINICAL STUDY; MALARIA; NONHUMAN; PAPUA NEW GUINEA; PARASITE IDENTIFICATION; PLASMODIUM FALCIPARUM; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; REPRODUCIBILITY;

PLASMODIUM FALCIPARUM; PLASMODIUM MALARIAE; PLASMODIUM VIVAX; PROTOZOA;

EID: 0032799007     PISSN: 00311820     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0031182099004552     Document Type: Article

References (46)

1. AL YAMAN, F., GENTON, B., ANDERS, R., TARAIKA, J., GINNY, M., MELLOR, S. & ALPERS, M. P. (1995). Assessment of the role of humoral response to Plasmodium falciparum MSP2 compared to RESA and SPf66 in protecting Papua New Guinea children from clinical malaria. Parasite Immunology 17, 493-501.
2. AL YAMAN, F., GENTON, B., ANDERS, R. F., FALK, M., TRIGLIA, T., LEWIS, D., HII, J., BECK, H. P. & ALPERS, M. P. (1994). Relationship between humoral response to Plasmodium falciparum merozoite surface antigen-2 and malaria morbidity in a highly endemic area of Papua New Guinea. American Journal of Tropical Medicine and Hygiene 51, 593-602.
3. ALANO, P., READ, D., BRUCE M., AIKAWA, M., KAIDO, T., TEGOSHI, T., BHATTI, S., SMITH, D. K., LUO, C., HANSRA, S., CARTER, R. & ELLIOTT, J. F. (1995). COS cell expression cloning of Pfg377, a Plasmodium falciparum gametocyte antigen associated with osmiophilic bodies. Molecular and Biochemical Parasitology 74, 143-156.
4. AMADOR, R. & PATARROYO, M. E. (1996). Malaria vaccines. Journal of Clinical Immunology 16, 183-189.
5. ARNHEIM, N., LI, H. & CUI, X. (1991). Genetic mapping by single sperm typing. Animal Genetics 22, 105-115.
6. BABIKER, H. A., LINES, J., HILL, W. G. & WALLIKER, D. (1997). Population structure of Plasmodium falciparum in villages with different malaria endemicity in east Africa. American Journal of Tropical Medicine and Hygiene 56, 141-147.
7. BABIKER, H. A., RANFORD-CARTWRIGHT, L. C., CURRIE, D., CHARLWOOD, J. D., BILLINGSLEY, P., TEUSCHER, T. & WALLIKER, D. (1994). Random mating in a natural population of the malaria parasite Plasmodium falciparum. Parasitology 109, 413-421.
8. BABIKER, H. A., SATTI, G. & WALLIKER, D. (1995). Genetic changes in the population of Plasmodium falciparum in a Sudanese village over a three-year period. American Journal of Tropical Medicine and Hygiene 53, 7-15.
9. BALLARD, J. W. O. & KREITMAN, M. (1995). Is mitochondrial DNA a strictly neutral marker? Trends in Ecology and Evolution 10, 485-488.
10. BROCKMAN, A., PAUL, R. E. L., ANDERSON, T. J. C., HACKFORD, I., PHAIPHUN, L., NOSTEN, F. & DAY, K. P. (1999). Application of genetic markers to the identification of recrudescent Plasmodium falciparum infections on the north western border of Thailand. American Journal of Tropical Medicine and Hygiene (in the Press).
11. DZIEGIEL, M., ROWE, P., BENNETT, S., ALLEN, S. J., OLERUP, O., GOTTSCHAU, A., BORRE, M. & RILEY, E. M. (1993). Immunoglobulin M and G antibody responses to Plasmodium falciparum glutamate-rich protein: Correlation with clinical immunity in Gambian children. Infection and Immunity 61, 103-108.
12. EGAN, A. F., MORRIS, J., BARNISH, G., ALLEN, S., GREENWOOD, B. M., KASLOW, D. C., HOLDER, A. A. & RILEY, E. M. (1996). Clinical immunity to Plasmodium falciparum malaria is associated with serum antibodies to the 19-kDa C-terminal fragment of the merozoite surface antigen, PfMSP-1. Journal of Infectious Diseases 173, 765-769.
13. EPPING, R. J., GOLDSTONE, S. D., INGRAM, L. T., UPCROFT, J. A., RAMASAMY, R., COOPER, J. A., BUSHELL, G. R. & GEYSEN, H. M. (1988). An epitope recognized by inhibitory monoclonal antibodies that react with a 51 kilodalton merozoite surface antigen in Plasmodium falciparum. Molecular and Biochemical Parasitology 28, 1-10.
14. ESCALANTE, A. A., LAL, A. A. & AYALA, F. J. (1998). Genetic polymorphism and natural selection in the malaria parasite Plasmodium falciparum. Genetics 149, 189-202.
15. ETLINGER, H. M., CASPERS, P., MATILE, H., SCHOENFELD, H. J., STUEBER, D. & TAKACS, B. (1991). Ability of recombinant or native proteins to protect monkeys against heterologous challenge with Plasmodium falciparum. Infection and Immunity 59, 3498-3503.
16. FELGER, I., MARSHAL, V. M., REEDER, J. C., HUNT, J. A., MGONE, C. S. & BECK, H. P. (1997). Sequence diversity and molecular evolution of the merozoite surface antigen 2 of Plasmodium falciparum. Journal of Molecular Evolution 45, 154-160.
17. FELGER, I., TAVUL., L., KABINTIK, S., MARSHALL, V., GENTON, D., ALPERS, M. & BECK, H. P. (1994). Plasmodium falciparum: Extensive polymorphism in merozoite surface antigen 2 alleles in an area with endemic Malaria in Papua New Guinea. Experimental Parasitology 79, 106-116.
18. FORSYTH, K. P., ANDERS, R. F., CATTANI, J. A. & ALPERS, M. P. (1989). Small area variation in prevalence of an S-antigen serotype of Plasmodium falciparum in villages of Madang, Papua New Guinea. American Journal of Tropical Medicine and Hygiene 40, 344-350.
19. FREIMER, N. B. & SLATKIN, M. (1996). Microsatellites: evolution and mutational processes. Ciba Foundation Symposium 197, 51-67.
20. GILBERT, S. C., PLEBANSKI, M., GUPTA, S., MORRIS, J., COX, M., AIDOO, M., KWIATKOWSKI, D., GREENWOOD, B. M., WHITTLE, H. C. & HILL, A. V. (1998). Association of malaria parasite population structure, HLA, and immunological antagonism. Science 279, 1173-1177.
21. GOLDSTEIN, D. B. & POLLOCK, D. D. (1997). Launching microsatellites: A review of mutation processes and methods of phylogenetic inference. Journal of Heredity 88, 335-342.
22. HASTINGS, I. M. (1996). Population genetics and the detection of immunogenic and drug-resistant loci in Plasmodium. Parasitology 112, 155-164.
23. HASTINGS, I. M. & WEDGWOOD OPPENHEIM, B. (1997). Sex, strains and virulence. Parasitology Today 13, 375-383.
24. HILL, W. G. & HABIKER, H. A. (1995). Estimation of numbers of malaria clones in blood samples. Proceedings of the Royal Society of London, Series B 262, 249-257.
25. HILL, W. G., BABIKER, H. A., RANFORD-CARTWRIGHT, L. C. & WALLIKER, D. (1995). Estimation of inbreeding coefficients from genotypic data on multiple alleles, and application to estimation of clonality in malaria parasites. Genetic Research Cambridge 65, 53-61.
26. HUGHES, A. L. (1991). Circumsporozoite protein genes of malaria parasites (Plasmodium spp.): Evidence for positive selection on immunogenic regions. Genetics 127, 345-354.
27. HUGHES, A. L. (1992). Positive selection and interallelic recombination at the merozoite surface antigen-1 (MSA-1) locus of Plasmodium falciparum. Molecular Biology and Evolution 9, 381-393.
28. HUGHES, M. K. & HUGHES, A. L. (1995). Natural selection on Plasmodium surface proteins. Molecular and Biochemical Parasitology 71, 99-113.
29. KREITMAN, M. (1996). The neutral theory is dead. Long live the neutral theory. Bioessays 18, 678-683.
30. KYES, S., HARDING, R., BLACK, G., CRAIG, A., PESHU, N., NEWBOLD, C. & MARSH, K. (1997). Limited spatial clustering of individual Plasmodium falciparum alleles in field isolates from coastal Kenya. American Journal of Tropical Medicine and Hygiene 57, 205-215.
31. MCDONALD, J. H. (1994). Detecting natural selection by comparing geographical variation in protein and DNA sequences. In Non Neutral Evolution : Theories and Molecular Data (ed. Golding, B.), pp. 88-100. Chapman and Hall, New York.
32. NEI, M. (1973). Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, USA 70, 3321-3323.
33. PAGGI, L., NASCETTI, G., CIANCHI, R., ORECCHIA, P., MATTIUCCI, S., D'AMELIO, S., BERLAND, B., BRATTEY, J., SMITH, J. W. & BULLINI, L. (1991). Genetic evidence for three species within Pseudoterranova decipiens (Nematoda, Ascaridida, Ascaridoidea) in the North Atlantic and Norwegian and Barents Seas. International Journal for Parasitology 2, 195-212.
34. PAUL, R. E. L., PACKER, M. J., WALMSLEY, M., LAGOG, M., RANFORD-CARTWRIGHT, L. C., PARU, R. & DAY, K. P. (1995). Mating patterns in malaria parasite populations of Papua New Guinea. Science 269, 1709-1711.
35. PEMBERTON, J. M., SLATE, J., BANCROFT, D. R. & BARRETT, J. A. (1995). Nonamplifying alleles at microsatellite loci: A caution for parentage and population studies. Molecular Ecology 4, 249-252.
36. RAND, D. M., DORFSMAN, M. & KANN, L. M. (1994). Neutral and non-neutral evolution of Drosophila mitochondrial DNA. Genetics 138, 741-756.
37. RANFORD CARTWRIGHT, L. C., TAYLOR, R. R., ASGARI JIRHANDEH, N., SMITH, D. B., ROBERTS, P. E., ROBINSON, V. J., BABIKER, H. A., RILEY, E. M., WALLIKER, D. & MCBRIDE, J. S. (1996). Differential antibody recognition of FC27-like Plasmodium falciparum merozoite surface protein MSP2 antigens which lack 12 amino acid repeats. Parasite Immunology 18, 411-420.
38. RICH, S. M., HUDSON, R. R. & AYALA, F. J. (1997). Plasmodium falciparum antigenic diversity: evidence of clonal population structure. Proceedings of the National Academy of Sciences, USA 94, 13040-13045.
39. SELANDER, R. K., CAUGANT, D. A., OCHMAN, H., MUSSER, J. M., GILMOUR, M. N. & WHITTAM, T. S. (1986). Methods of multilocus enzyme electrophoresis for bacterial population genetics and systematics. Applied Environmental Microbiology 51, 873-884.
40. SU, X. Z. & WELLEMS, T. E. (1996). Toward a high-resolution Plasmudium falciparum linkage map: Polymorphic markers from hundreds of simple sequence repeats. Genomics 33, 430-444.
41. SU, X. Z., KIRKMAN, L. A., EUJIOKA, H. & WELLEMS, T. E. (1997). Complex polymorphisms in an ∼ 330 kDa protein are linked to chloroquine-resistant P. falciparum in Southeast Asia and Africa. Cell 91, 593-603.
42. TAYLOR, R. T., ALLEN, S. J., GREENWOOD, B. M. & RILEY, E. M. (1998). IgG3 antibodies to Plasmodium falciparum merozoite surface protein 2 (MSP2): increasing prevalence with age and association with clinical immunity to malaria. American Journal of Tropical Medicine and Hygiene 58, 406-413.
43. WARD, R. D., SKIBINSKI, D. O. F. & WOODWARK, M. (1992). Protein heterozygosity, protein structure and taxonomic differentiation. In Evolutionary Biology, Vol. 26 (ed. Hecht, M. K., Wallace, W. & MacIntyre, R. J.), pp. 73-159. Plenum Publishing Corporation, New York.
44. WHITE, J. H., KILBEY, B. J., DE VRIES, E., GOMAN, M., ALANO, P., CHEESMAN, S., MCALEESE, S. & RIDLEY, R. G. (1993). The gene encoding DNA polymcrasc alpha from Plasmodium falciparum. Nucleic Acids Research 21, 3643-3646.
45. WOODEN, J., KYES, S. & SIBLEY, C. H. (1993). PCR and strain identification in Plasmodium falciparum. Parasitology Today 9, 303-305.
46. ZHAO, Y., KAPPES, D., YANG, J. & FRANKLIN, R. M. (1992). Molecular cloning, stage-specific expression and cellular distribution of a putative protein kinase from Plasmodium falciparum. European Journal of Biochemistry 207, 305-313.