Role of hydration water in protein unfolding

Biophysical Journal

Volumn 77, Issue 6, 1999, Pages 3311-3318

  Robinson, G Wilse ^a   Cho, C H ^a  

^a TEXAS TECH UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN; WATER;

ARTICLE; HYDRATION; HYDROGEN BOND; MOLECULAR STABILITY; PROTEIN DENATURATION; PROTEIN FOLDING; THERMODYNAMICS;

EID: 0032796426     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(99)77162-6     Document Type: Article

References (33)

1. Abseher, R., H. Schreiber, and O. Steinhauser. 1996. The influence of a protein on water dynamics in its vicinity investigated by molecular dynamics simulation. Proteins. 25:366-378.
2. Bassez, M.-P., J. Lee, and G. W. Robinson. 1987. Is liquid water really anomalous? J. Phys. Chem. 91:5818-5825.
3. Bosio, L., S.-H. Chen, and J. Teixeira. 1983. Isochoric temperature differential of the x-ray structure factor and structural rearrangements in low-temperature heavy water. Phys. Rev. A. 27:1468-1475.
4. Bryant, R. G. 1996. The dynamics of water-protein interactions. Annu. Rev. Biophys. Biomol. Struct. 25:29-53.
5. Caldwell, J., L. X. Dang, and P. A. Kollman. 1990. Implementation of nonadditive intermolecular potentials by use of molecular dynamics: development of a water-water potential and water-ion cluster interactions. J. Am. Chem. Soc. 112:9144-9147.
6. Cho, C. H., S. Singh, and G. W. Robinson. 1997. Understanding all of water's anomalies with a non-local potential. J. Chem. Phys. 107: 7979-7988.
7. Covell, D. G., and A. Wallqvist. 1997. Analysis of protein-protein interactions and the effects of amino acid mutations on their energetics. The importance of water molecules in the binding epitope. J. Mol. Biol. 269:281-297.
8. Fitter, J. 1999. The temperature dependence of internal molecular motions in hydrated and dry α-amylase: the role of hydration water in the dynamical transition of proteins. Biophys. J. 76:1034-1042.
9. Frank, H. S., and M. W. Evans. 1945. Free volume and entropy in condensed systems. III. Entropy in binary liquid mixtures; partial molal entropy in dilute solutions; structure and thermodynamics in aqueous electrolytes. J. Chem. Phys. 13:507-532.
10. Giorgione, J. R., and R. M. Epand. 1997. Role of water in protein kinase C catalysis and its binding to membranes. Biochemistry. 36:2250-2256.
11. Ibarra-Molero, B., G. I. Makhatadze, and J. M. Sanchez-Ruiz. 1999. Cold denaturation of ubiquitin. Biochim. Biophys. Acta. 1429:384-390.
12. Kamb, B. 1968. Ice polymorphism and the structure of water. In Structural Chemistry and Molecular Biology. A. Rich and N. Davidson, editors. W. H. Freeman and Co., San Francisco. 507-542.
13. Kauzmann, W. 1959. Some factors in the interpretation of protein denaturation. In Advances in Protein Chemistry. Vol. 14. C. B. Anfinsen, K. Bailey, M. L. Anson, and J. T. Edsall, editors. Academic, New York. 1-63.
14. Livingstone, J. R., R. S. Spolar, and M. T. Record, Jr. 1991. Contribution to the thermodynamics of protein folding from the reduction in water-accessible nonpolar surface area. Biochemistry. 30:4237-4244.
15. Makarov, V. A., B. K. Andrews, and B. M. Pettitt. 1998. Reconstructing the protein-water interface. Biopolymers. 45:469-478.
16. Makhatadze, G. I., and P. L. Privalov. 1995. Energetics of protein structure. In Advances in Protein Chemistry, Vol. 47. C. B. Anfinsen, F. M. Richards, J. T. Edsall, D. S. Eisenberg, editors. Academic, New York. 307-425.
17. Masterton, W. L. 1954. Partial molal volumes of hydrocarbons in water solution. J. Chem. Phys. 22:1830-1833.
18. Matouschek, A., J. M. Matthews, C. M. Johnson, and A. R. Fersht. 1994. Extrapolation to water of kinetic and equilibrium data for the unfolding of barnase in urea solutions. Protein Eng. 7:1089-1093.
19. Nagle, J. F. 1966. Lattice statistics of hydrogen bonded crystals. I. The residual entropy of ice. J. Math. Phys. 7:1484-1491.
20. Okhulkov, A. V., Y. N. Demianets, and Y. E. Gorbaty. 1994. X-ray scattering in liquid water at pressures up to 7.7 kbar: test of a fluctuation model. J. Chem. Phys. 100:1578-1587.
21. Parker, M. J., and A. R. Clarke. 1997. Amide backbone and water-related H/D isotope effects on the dynamics of a protein folding reaction. Biochemistry. 36:5786-5794.
22. Privalov, P. L. 1990. Cold denaturation of proteins. Crit. Rev. Biochem. Mol. Biol. 25:281-305.
23. Robinson, G. W., S. Singh, S.-B. Zhu, and M. W. Evans. 1996. Water in Biology, Chemistry and Physics. Experimental Overviews and Computational Methodologies. World Scientific, Singapore.
24. Robinson, O. W., C. H. Cho, S. Singh, J. Urquidi, and B. Xiao. 1998. Explicit outer bonding transformations in liquid water. The key to its understanding. Fifth Electronic Computational Chemistry Conference Internet Conference Nov. 2-30 (http://www.phys.ttu.edu/~dujcb/ ECCC5).
25. Robinson, G. W., C. H. Cho, and J. Urquidi. 1999. Isosbestic points in liquid water. Further strong evidence for the two-state mixture model. J. Chem. Phys. 111:698-702.
26. Schwabe, J. W. 1997. The role of water in protein-DNA interactions. Curr. Opin. Struct. Biol. 7:126-134.
27. Shaltiel, S., S. Cox, and S. S. Taylor. 1998. Conserved water molecules contribute to the extensive network of interactions at the active site of protein kinase A. Proc. Natl. Acad. Sci. USA. 95:484-491.
28. Spolar, R. S., J. R. Livingston, and M. T. Record, Jr. 1992. Use of liquid hydrocarbon and amide transfer data to estimate contributions to thermodynamic functions of protein folding from the removal of nonpolar and polar surface from water. Biochemistry. 31:3947-3955.
29. Urquidi, J., C. H. Cho, S. Singh, and G. W. Robinson. 1999. Temperature and pressure effects on the structure of liquid water. J. Mol. Struct. 485-486:363-371.
30. Vedamuthu, M., S. Singh, and G. W. Robinson. 1994. Properties of liquid water: origin of the density anomalies. J. Phys. Chem. 98:2222-2230.
31. Vedamuthu, M., S. Singh, and G. W. Robinson. 1995. Properties of liquid water. 4. The isothermal compressibility minimum near 50°C. J. Phys. Chem. 99:9263-9267.
32. Wiggins, P. M. 1997. Hydrophobic hydration, hydrophobic forces and protein folding. Physica A. 238:113-128.
33. Wintrode, P. L., G. I. Makhatadze, and P. L. Privalov. 1994. Thermodynamics of ubiquitin unfolding. Proteins. 18:246-253.