Identification and genetic mapping of bovine chemokine genes expressed in epithelial cells

Mammalian Genome

Volumn 10, Issue 2, 1999, Pages 128-133

  Heaton, Michael P ^b   Laegreid, William W ^b   Beattie, Craig W ^a   Smith, Timothy P L ^b   Kappes, Steven M ^b  

^a UNIVERSITY OF MINNESOTA   (United States)

^b NONE

Author keywords

[No Author keywords available]

Indexed keywords

ALBUMIN; CELL PROTEIN; CHEMOKINE; CYCLOHEXIMIDE; INTERLEUKIN 8; LIPOPOLYSACCHARIDE; VITAMIN D BINDING PROTEIN;

ALLELE; AMINO ACID SEQUENCE; ANIMAL CELL; ARTICLE; CATTLE; CELL CULTURE; CHROMOSOME 4Q; CHROMOSOME 6; EPITHELIUM CELL; GENE CLUSTER; GENE EXPRESSION; GENE MAPPING; GENETIC POLYMORPHISM; INFLAMMATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN FAMILY; RNA FINGERPRINTING;

AMINO ACID SEQUENCE; ANIMALS; CATTLE; CELL LINE; CHEMOKINES; CHROMOSOME MAPPING; CHROMOSOMES; DNA, COMPLEMENTARY; EPITHELIAL CELLS; GENE EXPRESSION; GENES; GENETIC MARKERS; INTERLEUKIN-8; KIDNEY; LIPOPOLYSACCHARIDES; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; RNA; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID;

EID: 0032788364     PISSN: 09388990     EISSN: None     Source Type: Journal    
DOI: 10.1007/s003359900957     Document Type: Article

References (51)

1. Agace W, Hedges S, Andersson U, Andersson J, Ceska M et al. (1993) Selective cytokine production by epithelial cells following exposure to Escherichia coli. Infect Immun 61, 602-609
2. Altare F, Durandy A, Lammas D, Emile IF, Lamhamedi S et al. (1998) Impairment of mycobacterial immunity in human interleukin-12 receptor deficiency. Science 280, 1432-1435
3. Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402
4. Bell BP, Goldoft M, Griffin PM, Davis MA, Gordon DC et al. (1994) A multistate outbreak of Escherichia coli O157:H7-associated bloody diarrhea and hemolytic uremic syndrome from hamburgers. The Washington experience. J Am Med Assoc 272, 1349-1353
5. Bilge SS, Vary JC, Jr., Dowell SF, Tarr PI (1996) Role of the Escherichia coli O157:H7 O side chain in adherence and analysis of an rfb locus. Infect Immun 64, 4795-4801
6. Bishop MD, Kappes SM, Keele JW, Stone RT, Sunden SL et al. (1994) A genetic linkage map for cattle. Genetics 136, 619-639
7. Cooke NE, Willard HF, David EV, George DL (1986) Direct regional assignment of the gene for vitamin D binding protein (Gc-globulin) to human chromosome 4q11-q13 and identification of an associated DNA polymorphism. Hum Genet 73, 225-229
8. Dean M, Carrington M, Winkler C, Huttley GA, Smith MW et al. (1996) Genetic restriction of HIV-1 infection and progression to AIDS by a deletion allele of the CKR5 structural gene. Hemophilia Growth and Development Study, Multicenter AIDS Cohort Study, Multicenter Hemophilia Cohort Study, San Francisco City Cohort, ALIVE Study. Science 273, 1856-1862
9. Ferretti L, Leone P, Sgaramella V (1990) Long range restriction analysis of the bovine casein genes. Nucleic Acids Res 18, 6829-6833
10. Fujiwara Y, Miwa M, Nogami M, Okumura K, Nobori T et al. (1997) Genomic organization and chromosomal localization of the human casein gene family. Hum Genet 99, 368-373
11. Glynn MK, Bopp C, Dewitt W, Dabney P, Mokhtar M et al. (1998) Emergence of multidrug-resistant Salmonella enterica serotype typhimurium DT104 infections in the United States. N Engl J Med 338, 1333-1338
12. Green P, Falls K, Crooks S (1990) Documentation for CRI-MAP version 2.4. (St. Louis, Mo: Washington University School of Medicine)
13. Harper ME, Dugaiczyk A (1983) Linkage of the evolutionarily-related serum albumin and alpha-fetoprotein genes within q11-22 of human chromosome 4. Am J Hum Genet 35, 565-572
14. Haskill S, Peace A, Morris J, Sporn SA, Anisowicz A et al. (1990) Identification of three related human GRO genes encoding cytokine functions. Proc Natl Acad Sci USA 87, 7732-7736
15. Hedges S, Agace W, Svensson M, Sjogren AC, Ceska M et al. (1994) Uroepithelial cells are part of a mucosal cytokine network. Infect Immun 62, 2315-2321
16. Jong R, Altare F, Haagen IA, Elferink DG, Boer T et al. (1998) Severe mycobacterial and Salmonella infections in interleukin-12 receptor-deficient patients. Science 280, 1435-1438
17. Kagnoff MF, Eckmann L (1997) Epithelial cells as sensors for microbial infection. J Clin Invest 100, 6-10
18. Kagnoff MF, Eckmann L, Yang S-K, Huang G, Jung HC et al. (1996) Intestinal epithelial cells: an integral component of the mucosal immune system. In Essentials of Mucosal Immunology, MF Kagnoff, H Kiyono (eds) (San Diego, Calif.: Academic Press), pp 63-71
19. Kappes SM, Bishop MD, Keele JW, Penedo MC, Hines HC et al. (1994) Linkage of bovine erythrocyte antigen loci B, C, L, S, Z, R′ and T′ and the serum protein loci post-transferrin 2 (PTF 2), vitamin D binding protein (GC) and albumin (ALB) to DNA microsatellite markers. Anim Genet 25, 133-140
20. Kappes SM, Keele JW, Stone RT, McGraw RA, Sonstegard TS et al. (1997) A second-generation linkage map of the bovine genome. Genome Res 7, 235-249
21. Karlin S, Altschul SF (1990) Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc Natl Acad Sci USA 87, 2264-2268
22. Karlin S, Altschul SF (1993) Applications and statistics for multiple high-scoring segments in molecular sequences. Proc Natl Acad Sci USA 90, 5873-5877
23. Karpman D, Connell H, Svensson M, Scheutz F, Alm P et al. (1997) The role of lipopolysaccharide and Shiga-like toxin in a mouse model of Escherichia coli O157:H7 infection. J Infect Dis 175, 611-620
24. Kruglyak L (1997) The use of a genetic map of biallelic markers in linkage studies. Nat Genet 17, 21-24
25. Laegreid W, Hoffman M, Keen J, Elder R, Kwang J (1998) Development of a blocking enzyme-linked immunosorbent assay for detection of serum antibodies to O157 antigen of Escherichia coli. Clin Diagn Lab Immunol 5, 242-246
26. Legastelois I, Greenland T, Arnaud P, Momex JF, Cordier G (1994) Sequencing of the ovine interleukin-8-encoding cDNA using the polymerase chain reaction. Gene 150, 367-369
27. Leive L, Shovlin VK, Mergenhagen SE (1968) Physical, chemical, and immunological properties of lipopolysaccharide released from Escherichia coli by ethylenediaminetetraacetate. J Biol Chem 243, 6384-6391
28. Lenstra JA, van Boxtel JA, Zwaagstra KA, Schwerin M (1993) Short interspersed nuclear element (SINE) sequences of the Bovidae. Anim Genet 24, 33-39
29. Liang P, Pardee AB (1992) Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction. Science 257, 967-971
30. Mathieu-Daude F, Cheng R, Welsh J, McClelland M (1996) Screening of differentially amplified cDNA products from RNA arbitrarily primed PCR fingerprints using single strand conformation polymorphism (SSCP) gels. Nucleic Acids Res 24, 1504-1507
31. McClelland M, Ralph D, Cheng R, Welsh J (1994) Interactions among regulators of RNA abundance characterized using RNA fingerprinting by arbitrarily primed PCR. Nucleic Acids Res 22, 4419-4431
32. Miller SA, Dykes DD, Polesky HF (1988) A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 16, 1215
33. MMWR (1997) Escherichia coli O157:H7 infections associated with eating a nationally distributed commercial brand of frozen ground beef patties and burgers - Colorado, 1997. Morb Mortal Wkly Rep 46, 777-778
34. Modi WS, Chen ZQ (1998) Localization of the human CXC chemokine subfamily on the long arm of chromosome 4 using radiation hybrids. Genomics 47, 136-139
35. Modi WS, Dean M, Seuanez HN, Mukaida N, Matsushima K et al. (1990) Monocyte-derived neutrophil chemotactic factor (MDNCF/IL-8) resides in a gene cluster along with several other members of the platelet factor 4 gene superfamily. Hum Genet 84, 185-187
36. Morsey MA, Popowych Y, Kowalski J, Gerlach G, Godson D et al. (1996) Molecular cloning and expression of bovine interleukin-8. Microb Pathog 20, 203-212
37. Ralph D, McClelland M, Welsh J (1993) RNA fingerprinting using arbitrarily primed PCR identifies differentially regulated RNAs in mink lung (Mv1Lu) cells growth arrested by transforming growth factor beta 1. Proc Natl Acad Sci USA 90, 10710-10714
38. Rowell DL, Eckmann L, Dwinell MB, Carpenter SP, Raucy JL et al. (1997) Human hepatocytes express an array of proinflammatory cytokines after agonist stimulation or bacterial invasion. Am J Physiol 273, G322-G332
39. Smith JB, Royal LE, Herschman HR (1997a) Sequence similarities of a subgroup of CXC chemokines related to murine LIX: implications for the interpretation of evolutionary relationships among chemokines. J Leukoc Biol 62, 599-603
40. Smith MW, Dean M, Carrington M, Winkler C, Huttley GA et al. (1997b) Contrasting genetic influence of CCR2 and CCR5 variants on HIV-1 infection and disease progression. Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC), ALIVE Study. Science 277, 959-965
41. Svanborg C, Agace W, Hedges S, Hedlund M, Svensson M (1996) Bacterial activation of mucosal cytokine production. In Essentials of Mucosal Immunology, MF Kagnoff, H Kiyono (eds) (San Diego, Calif.: Academic Press), pp 73-83
42. Taylor CM (1995) Verocytotoxin-producing Escherichia coli and the haemolytic uraemic syndrome. J Infect 30, 189-192
43. Tekamp-Olson P, Gallegos C, Bauer D, McClain J, Sherry B et al. (1990) Cloning and characterization of cDNAs for murine macrophage inflammatory protein 2 and its human homologues. J Exp Med 172, 911-919
44. Threadgill DW, Womack JE (1990) Genomic analysis of the major bovine milk protein genes. Nucleic Acids Res 18, 6935-6942
45. Wang DG, Fan J, Siao C, Bemo A, Young P et al. (1998) Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome. Science 280, 1077-1082
46. Welsh J, Chada K, Dalal SS, Cheng R, Ralph D et al. (1992) Arbitrarily primed PCR fingerprinting of RNA. Nucleic Acids Res 20, 4965-4970
47. Winkler C, Modi W, Smith MW, Nelson GW, Wu X et al. (1998) Genetic restriction of AIDS pathogenesis by an SDF-1 chemokine gene variant. ALIVE Study, Hemophilia Growth and Development Study (HGDS), Multicenter AIDS Cohort Study (MACS), Multicenter Hemophilia Cohort Study (MHCS), San Francisco City Cohort (SFCC). Science 279, 389-393
48. Wong KK, McClelland M (1994) Stress-inducible gene of Salmonella typhimurium identified by arbitrarily primed PCR of RNA. Proc Natl Acad Sci USA 91, 639-643
49. Yang SK, Eckmann L, Panja A, Kagnoff MF (1997) Differential and regulated expression of C-X-C, C-C, and C-chemokines by human colon epithelial cells. Gastroenterology 113, 1214-1223
50. Yoshimura T, Modi WS (1998) Isolation of novel GRO genes, and a phylogenetic analysis of the CXC chemokine subfamily in mammals. Genbank accession number U95813.
51. Zuckerman SH, Evans GF, Guthrie L (1991) Transcriptional and posttranscriptional mechanisms involved in the differential expression of LPS-induced IL-1 and TNF mRNA. Immunology 73, 460-465