Presence of wheat retrotransposons in Gramineae species and the origin of wheat retrotransposon families

Genes and Genetic Systems

Volumn 72, Issue 6, 1997, Pages 335-343

  Matsuoka, Yoshihiro ^a   Tsunewaki, Koichiro ^a  

^a FUKUI PREFECTURAL UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA;

ARTICLE; DNA SEQUENCE; GENOME; MOLECULAR CLONING; NONHUMAN; PLANT; PLANT LEAF; RETROPOSON; SEQUENCE HOMOLOGY; SPECIES DIFFERENTIATION; WHEAT;

AMINO ACID SEQUENCE; BASE SEQUENCE; CEREALS; CONSERVED SEQUENCE; DNA, PLANT; EVOLUTION, MOLECULAR; GENOME, PLANT; GLOBULINS; MOLECULAR SEQUENCE DATA; PLANT PROTEINS; RESTRICTION MAPPING; RETROELEMENTS; SEQUENCE HOMOLOGY, AMINO ACID; TRITICUM;

POACEAE; POOIDEAE; TRITICUM AESTIVUM;

EID: 0031427358     PISSN: 13417568     EISSN: None     Source Type: Journal    
DOI: 10.1266/ggs.72.335     Document Type: Article

References (32)

1. Abbo, S., Dunford, R. P., Foote, T. N., Reader, S. M., Flavell, R. B., and Moore, G. (1995) Organization of retro-element and stem-loop repeat families in the genomes and nuclei of cereals. Chromosome Res. 3, 5-15.
2. Arumuganathan, K., and Earle, E. D. (1991) Nuclear DNA content of some important plant species. Plant Mol. Biol. Rep. 9: 208-218.
3. Covey, S. N. (1986) Amino acid sequence homology in gag region reverse transcribing elements and the coat protein gene of cauliflower mosaic virus. Nucleic Acids Res. 14, 623-633.
4. Domingo, E., and Holland, J. J. (1994) Mutation rates and rapid evolution of RNA viruses. In: The Evolutionary Biology of Viruses (ed.: Morse, S. S.), p. 161-184. Raven Press Ltd., New York.
5. Emori, Y., Shiba, T., Kanaya, S., Inouye, S., Yuki, S., and Saigo, K. (1985) The nucleotide sequences of copia and copia-related RNA in Drosophila virus-like particles. Nature 315, 773-776.
6. Flavell, A. J., Dunbar, E., Anderson, R., Pearce, S. R., Hartley, R., and Kumar, A. (1992) Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Res. 20, 3639-3644.
7. Fuerstenberg, S. I., and Johns, M. A. (1990) Distribution of Bs1 retrotransposons in Zea and related genera. Theor. Appl. Genet. 80, 680-686.
8. Gabriel, A., Willems, M., Mules, E. H., and Boeke, J. D. (1996) Replication infidelity during a single cycle of Ty1 retrotransposition. Proc. Natl. Acad. Sci. USA 93, 7767-7771.
9. Grandbastien, M. A. (1992) Retroelements in higher plants. Trends Genet. 8, 103-108.
10. Grandbastien, M. A., Spielmann, A., and Caboche, M. (1989) Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics. Nature 337, 376-380.
11. Harberd, N. P., Flavell, R. B., and Thompson, R. D. (1987) Identification of a transposon-like insertion in a Glu-1 allele of wheat. Mol. Gen. Genet. 209, 326-332.
12. Hirochika, H., and Hirochika, R. (1993) Ty1-copia group retrotransposons as ubiquitous components of plant genomes. Jpn. J. Genet. 68, 35-46.
13. Hirochika, H., Fukuchi, A., and Kikuchi, F. (1992) Retrotransposon families in rice. Mol. Gen. Genet. 233, 209-216.
14. Hu, H., Prem Das, O., and Messing, J. (1995) Zeon-1, a member of a new maize retrotransposon family. Mol. Gen. Genet. 248, 471-480.
15. Manninen, I., and Schulman, A. H. (1993) BARE-1, a copia-like retroelement in barley (Hordeum vulgare L.). Plant Mol. Biol. 22, 829-846.
16. Matsuoka, Y., and Tsunewaki, K. (1996) Wheat retrotransposon families identified by reverse transcriptase domain analysis. Mol. Biol. Evol. 13, 1384-1392.
17. Meyerowitz, E. M., and Pruitt, R. E. (1985) Arabidopsis thaliana and plant molecular genetics. Science 229, 1214-1218.
18. Monte, J. V., Flavell, R. B., and Gustafson, J. P. (1995) WIS 2-1A: an ancient retrotransposon in the Triticeae tribe. Theor. Appl. Genet. 91, 367-373.
19. Moore, G., Lucas, H., Batty, N., and Flavell, R. (1991) A family of retrotransposons and associated genomic variation in wheat. Genomics 10: 461-468.
20. Mount, S. M., and Rubin, G. M. (1985) Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins. Mol. Cell. Biol. 5, 1630-1638.
21. Murphy, G. J. P., Lucas, H., Moore, G., and Flavell, R. B. (1992) Sequence analysis of WIS-2-1A, a retrotransposon-like element from wheat. Plant Mol. Biol. 20: 991-995.
22. Murray, M. G., and Thompson, W. F. (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8, 4321-4325.
23. Nakajima, R., Noma, K., Ohtsubo, H., and Ohtsubo, E. (1996) Identification and characterization of two tandem repeat sequences (TrsB and TrsC) and a retrotransposon (RIRE1) as genome-general sequences in rice. Genes Genet. Syst. 71, 373-382.
24. Noma, K., Nakajima, R., Ohtsubo, H., and Ohtsubo, E. (1997) RIRE1, a retrotransposon from wild rice Oryza australiensis. Genes Genet. Syst. 72, 131-140.
25. Pearl, L. H., and Taylor, W. R. (1987) A structural model for the retroviral proteases. Nature 329, 351-354.
26. Prats, A. C., Sarih, L., Gabus, C., Litvak, S., Keith, G., and Darlix, J. L. (1988) Small finger protein of avian and murine retroviruses has nucleic acid annealing activity and positions the replication primer tRNA onto genomic RNA. EMBO J. 7, 1777-1783.
27. Saitou, N., and Nei, M. (1987) The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425.
28. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighing, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
29. Toh, H., Hayashida, H., and Miyata, T. (1983) Sequence homology between retroviral reverse transcriptase and putative polymerases of hepatitis B virus and cauliflower mosaic virus. Nature 305: 827-829.
30. Voytas, D. F., Cummings, M. P., Konieczny, A., Ausubel, F. M., and Rodermel, S. R. (1992) Copia-like retrotransposons are ubiquitous among plants. Proc. Natl. Acad. Sci. USA 89, 7124-7128.
31. Voytas, D. F., and Ausubel, F. M. (1988) A copia-like transposable element family in Arabidopsis thaliana. Nature 336, 242-244.
32. Xiong, Y., and Eickbush, T. H. (1990) Origin and evolution of retroelements based upon their reverse transcriptase sequences. EMBO J. 9, 3353-3362.