Cytochrome-c-binding site on cytochrome oxidase in Paracoccus denitrificans

European Journal of Biochemistry

Volumn 251, Issue 1-2, 1998, Pages 367-373

  Witt, Heike ^a   Malatesta, Francesco ^b   Nicoletti, Flavia ^c   Brunori, Maurizio ^c   Ludwig, Bernd ^a  

^a Institute of Biochemistry   (Germany)

^b UNIVERSITY OF L'AQUILA   (Italy)

^c SAPIENZA UNIVERSITY OF ROME   (Italy)

Author keywords

Cytochrome c oxidase; Docking; Electron transfer; Electrostatic interaction; Ionic strength dependence

Indexed keywords

CYTOCHROME C; CYTOCHROME C OXIDASE;

ARTICLE; BINDING SITE; ELECTRON TRANSPORT; ENZYME STRUCTURE; ENZYME SUBSTRATE COMPLEX; IONIC STRENGTH; KINETICS; NONHUMAN; PARACOCCUS DENITRIFICANS; PRIORITY JOURNAL;

BINDING SITES; CYTOCHROME C GROUP; ELECTRON TRANSPORT COMPLEX IV; KINETICS; MUTAGENESIS, SITE-DIRECTED; MUTATION; OSMOLAR CONCENTRATION; PARACOCCUS DENITRIFICANS;

EID: 0032518436     PISSN: 00142956     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1432-1327.1998.2510367.x     Document Type: Article

References (39)

1. 3 complexes, J. Biol. Chem. 260, 2458-2467.
2. Bisson, R., Steffens, G. C. M., Capaldi, R. A. & Buse, G. (1982) Mapping of the cytochrome c binding site on cytochrome c oxidase, FEBS Lett. 144, 359-363.
3. Bolgiano, B., Smith, L. & Davies, H. C. (1987) Kinetics of the interaction of the cytochrome c oxidase of Paracoccus denitrificans with its own and bovine cytochrome c, Biochim. Biophys. Acta 933, 341-350.
4. Brezinski, P. & Malmström, B. G. (1986) Electron-transport-driven proton pumps display nonhyperbolic kinetics: simulation of the steady-state kinetics of cytochrome c oxidase, Proc. Natl Acad. Sci. USA 83, 4282-4286.
5. Brunori, M., Giuffré, A., D'Itri, E. & Sarti, P. (1997) Internal electron transfer in Cu-heme oxidases:thermodynamic or kinetic control? J. Biol. Chem. 272, 19870-19874.
6. Capaldi, R. A. (1990) Structure and function of cytochrome c oxidase, Annu. Rev. Biochem. 59, 569-596.
7. Errede, B., Haight, G. P. & Kamen, M. D. (1976) Oxidation of ferrocytochrome c by mitochondrial cytochrome c oxidase, Proc. Natl Acad. Sci. USA 73, 113-117.
8. Ferguson-Miller, S., Brautigan, D. & Margoliash, E. (1976) Correlation of the kinetics of electron transfer activity of various eukaryotic cytochromes c with binding to mitochondrial cytochrome c oxidase, J. Biol. Chem. 251, 1104-1115.
9. Ferguson-Miller, S., Brautigan, D. & Margoliash, E. (1978) Definition of cytochrome c binding domains by chemical modification, J. Biol. Chem. 253, 149-159.
10. Garber, E. A. E. & Margoliash, E. (1990) Interaction of cytochrome c with cytochrome c oxidase: an understanding of the high- to low-affinity transition, Biochim. Biophys. Acta 1015, 279-287.
11. Gennis, R. B. & Trumpower, B. L. (1994) Energy transduction by cytochrome complexes in mitochondrial and bacterial respiration: the enzymology of coupling electron transfer reactions to transmembrane proton translocation, Annu. Rev. Biochem. 63, 675-716.
12. Gerhus, E., Steinrücke, P. & Ludwig, B. (1990) Paracoccus denitrificans cytochrome c, gene replacement mutants, J. Bacteriol. 172, 2392-2400.
13. de Gier, J.-W. L., Lübben, M., Reijnders, W. N. M., Tipker, C. A., Slotboom, D.-J., van Spanning, R. J. M., Stouthamer, A. H. & van der Oost, J. (1994) The terminal oxidases of Paracoccus denitrificans, Mol. Microbiol. 13, 183-196.
14. 551: evidence of conformationally coupled electron transfer, Biochemistry 33, 12600-12608.
15. Hazzard, J. T., Rong, S.-Y. & Tollin, G. (1991) Ionic strength dependence of the kinetics of electron transfer from bovine mitochondrial cytochrome c to bovine mitochondrial cytochrome c oxidase, Biochemistry 30, 213-222.
16. 3 from Paracoccus denitrificans and the 13-subunit beef heart enzyme, Biophys. J. 60, 415-423.
17. Iwata, S., Ostermeier, C., Ludwig, B. & Michel, H. (1995) Structure at 2.8 Å (resolution of cytochrome c oxidase from Paracoccus denitrificans, Nature 376, 660-669.
18. A domain: identification of substrate-binding residues in cytochrome c oxidase, Biochemistry 34, 5824-5830.
19. Ludwig, B. (1986) Cytochrome c oxidase from Paracoccus denitrificans, Methods Enzymol. 126, 153-159.
20. Malatesta, F., Sarti, P., Antonini, G., Vallone, B. & Brunori, M. (1990) Electron delivery to the binuclear centre in cytochrome oxidase: catalytic significance and evidence for an additional intermediate, Proc. Natl Acad. Sci. USA 87, 7410-7413.
21. Meyer, T. E., Zhao, Z. G., Cusanovich, M. A. & Tollin, G. (1993) Transient kinetics of electron transfer from a variety of c-type cytochromes to plastocyanin, Biochemistry 32, 4552-4559.
22. Millett, F., de Jong, C., Paulson, L. & Capaldi, R. A. (1983) Identification of specific carboxylate groups on cytochrome c oxidase that are involved in binding cytochrome c, Biochemistry 22, 546-552.
23. 3) from Paracoccus denitrificans: analysis of mutations in putative proton channels of subunit I, J. Bioenerg. Biomembr., in the press.
24. 1, J. Biol. Chem. 255, 4732-4739.
25. Sinjorgo, K. M., Steinebach, O. M., Dekker, H. L. & Muijsers, A. O. (1986) The effects of pH and ionic strength on cytochrome c oxidase steady-state kinetics reveal a catalytic and a non-catalytic interaction domain for cytochrome c, Biochim. Biophys. Acta 850, 108-115.
26. Speck, S. H., Dye, D. & Margoliash, E. (1984) Single catalytic site model for the oxidation of ferrocytochrome c by mitochondrial cytochrome c oxidase, Proc. Natl Acad. Sci. USA 81, 347-351.
27. Staudenmayer, N., Ng, S., Smith, M. B. & Millet, F. (1977) Effects of specific trifluoroacetylation of individual cytochrome c lysines on the reaction with cytochrome oxidase, Biochemistry 16, 600-604.
28. Steinrücke, P., Gerhus, E. & Ludwig, B. (1991) Paracoccus denitrificans mutants deleted in the gene for subunit II of cytochrome c oxidase also lack subunit I, J. Biol. Chem. 266, 7676-7681.
29. Tiede, D. M., Vashishta, A.-C. & Gunner, M. R. (1993) Electron-transfer kinetics and electrostatic properties of the Rhodobacter sphaeroides reaction center and soluble c-cytochromes, Biochemistry 32, 4515-4531.
30. 550, J. Biol. Chem. 251, 4033-4036.
31. Tollin, G. & Hazzard, J. T. (1991) Intra- and intermolecular electron transfer processes in redox proteins, Arch. Biochem. Biophys. 287, 1-7.
32. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1995) Structures of metal sites of oxidized bovine heart cytochrome c oxidase at 2.8 Å, Science 269, 1069-1074.
33. Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R. & Yoshikawa, S. (1996) The whole structure of the 13-subunit oxidized cytochrome c oxidase at 2.8 Å, Science 272, 1136-1144.
34. 552 and sequence analysis of the gene, Eur. J. Biochem. 231, 259-265.
35. Watkins, J. A., Cusanovich, M. A., Meyer, T. E. & Tollin, G. (1994) A 'parallel plate' electrostatic model for bimolecular rate constants applied to electron transfer proteins, Protein Sci. 3, 2104-2114.
36. 1 nitrite reductase, Nat. Struct. Biol. 2, 975-982.
37. Witt, H., Zickermann, V. & Ludwig, B. (1995) Site-directed mutagenesis of cytochrome c oxidase reveals two acidic residues involved in the binding of cytochrome c, Biochim. Biophys. Acta 1230, 74-76.
38. Witt, H. & Ludwig, B. (1997) Isolation, analysis, and deletion of the gene coding for subunit IV of cytochrome c oxidase in Paracoccus denitrificans, J. Biol. Chem. 272, 5514-5517.
39. 2+-binding of Paracoccus denitrificans cytochrome c oxidase, FEBS Lett. 409, 128-130.