Analysis of the seven-member AAD gene set demonstrates that genetic redundancy in yeast may be more apparent than real

Genetics

Volumn 153, Issue 4, 1999, Pages 1591-1600

  Delneri, Daniela ^a   Gardner, David C J ^a   Oliver, Stephen G ^a  

^a UNIVERSITY OF MANCHESTER   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL DEHYDROGENASE; DIAMIDE; FUNGAL PROTEIN; GLUTATHIONE; HYDROGEN PEROXIDE; LIGNIN; MALEIC ACID DERIVATIVE; TRANSCRIPTION FACTOR;

AMINO ACID SEQUENCE; ARTICLE; BINDING SITE; GENE DELETION; GENE DUPLICATION; GENE EXPRESSION; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OXIDATIVE STRESS; PHANEROCHAETE; PRIORITY JOURNAL; SACCHAROMYCES CEREVISIAE; STOP CODON; TELOMERE;

ALCOHOL OXIDOREDUCTASES; BASE SEQUENCE; DNA PROBES; DNA-BINDING PROTEINS; GENES, FUNGAL; OPEN READING FRAMES; OXIDATIVE STRESS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

EID: 0032736181     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (46)

1. ALTSCHUL, S. F., W. GISH, W. MILLER, E. W. MYERS and D. J. LIPMAN, 1990 Basic local alignment search tool. J. Mol. Biol. 215: 403-410.
2. BAGANZ, F., A. HAYES, D. MARREN, D. C. J. GARDNER and S. G. OLIVER, 1997 Suitability of replacement markers for functional analysis studies in Saccharomyces cerevisiae. Yeast 13: 1563-1573.
3. BLATTNER, F. R., G. PLUNKETT III, C. A. BLOCH, N. T. PERNA, V. BURLAND et al., 1997 The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1474.
4. BUSSEY, H., D. B. KABACK, W. ZHONG, D. T. VO, M. W. CLARK et al., 1995 The nucleotide sequence of chromosome 1 from Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 92: 3809-3813.
5. CARLSON, M., J. L. CELENZA and F. J. ENG, 1985 Evolution of the dispersed SUC gene family of Saccharomyces by rearrangements of chromosome telomeres. Mol. Cell. Biol. 5: 2894-2902.
6. CARY, J. W., M. WRIGHT, D. BHATNAGAR, R. LEE and F. S. CHU, 1996 Molecular characterization of an Aspergillus parasiticus dehydrogenase gene, norA, located on the aflatoxin biosynthesis gene cluster. Appl. Environ. Microbiol. 62: 360-366.
7. CHARRON, M. J., E. READ, S. R. HAUT and C. A. MICHELS, 1989 Molecular evolution of the telomere-associated MAL loci of Saccharomyces. Genetics 122: 307-316.
8. DELNERI, D., D. C. J. GARDNER, C. V. BRUSCHI and S. G. OLIVER, 1999 Disruption of seven hypothetical aryl-alcohol dehydrogenase genes from Saccharomyces cerevisiae and construction of a multiple knock-out strain. Yeast 15: 1681-1689.
9. DERISI, J. L., V. R. IYER and P. O. BROWN, 1997 Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
10. DEVEREUX, J., P. HAEBERLI and O. SMITHIES, 1984 A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12: 387-395.
11. DUJON, B., 1996 The yeast genome project: What did we learn? Trends Genet. 12: 263-270.
12. DUJON, B., D. ALEXANDRAKI, B. ANDRE, W. ANSORGE, V. BALADRON et al., 1994 Complete DNA sequence of yeast chromosome XI. Nature 369: 371-378.
13. DUTTWEILER, H. M., and D. S. GROSS, 1998 Bacterial growth medium that significantly increases the yield of recombinant plasmid. Biotechniques 24: 438-444.
14. 32P-based hybridizations. Anal. Biochem. 210: 235-244.
15. FERNANDES, L., C. RODRIGUES-POUSADA and K. STRUHL, 1997 Yap, a novel family of eight bZIP proteins in Saccharomyces cerevisiae with distinct biological functions. Mol. Cell. Biol. 17: 6982-6993.
16. GALIBERT, F., D. ALEXANDRAKI, A. BAUR, E. BOLES, N. CHALWATZIS et al., 1996 Complete nucleotide sequence of Saccharomyces cerevisiae chromosome X. EMBO J. 15: 2031-2049.
17. GOFFEAU, A., B. G. BARRELL, H. BUSSEY, R. W. DAVIS, B. DUJON et al., 1996 Life with 6000 genes. Science 274: 546-567.
18. JAMES, C. M., K. J. INDGE and S. G. OLIVER, 1995 DNA sequence analysis of a 35 kb segment from Saccharomyces cerevisiae chromosome VII reveals 19 open reading frames including RAD54, ACE1/CUP2, PMR1, RCK1, AMS1 and CAL1/CDC43. Yeast 11: 1413-1419.
19. KEOGH, R. S., C. SEOIGHE and K. H. WOLFE, 1998 Evolution of gene order and chromosome number in Saccharomyces, Kluyveromyces and related fungi. Yeast 14: 443-457.
20. KUGE, S., and N. JONES, 1994 YAP1 dependent activation of TRX2 is essential for the response of Saccharomyces cerevisiae to oxidative stress by hydroperoxides. EMBO J. 13: 655-664.
21. KUGE, S., N. JONES and A. NOMOTO, 1997 Regulation of yAP-1 nuclear localization in response to oxidative stress. EMBO J. 16: 1710-1720.
22. LALO, D., S. STETTLER, S. MANOTTE, P. P. SLONIMSKI and P. THURIAUX, 1993 Two yeast chromosomes are related by a fossil duplication of their centromeric regions. C. R. Acad. Sci. 316: 137-143.
23. LI, Z., A. G. PAULOVICH and J. L. WOOLFORD, JR., 1995 Feedback inhibition of the yeast ribosomal protein gene CRY2 is mediated by the nucleotide sequence and secondary structure of CRY2 pre-mRNA. Mol. Cell. Biol. 15: 6454-6464.
24. MAYNARD SMITH, J., 1989 Evolutionary Genetics. Oxford University Press, New York.
25. MELNICK, L., and F. J. SHERMAN, 1993 The gene clusters ARC and COR on chromosomes 5 and 10, respectively, of Saccharomyces cerevisiae share a common ancestry. Mol. Biol. 233: 372-388.
26. MEWES, H. W., K. ALBERMANN, M. BAHR, D. FRISHMAN, A. GLEISSNER et al., 1997 Overview of the yeast genome. Nature 387: 7-65.
27. MOYE-ROWLEY, W. S., K. D. HARSHMAN and C. S. PARKER, 1989 Yeast YAP1 encodes a novel form of the jun family of transcriptional activator proteins. Genes Dev. 3: 283-292.
28. MUHEIM, A., R. WALDNER, D. SANGLARD, J. REISER, H. E. SCHOEMAKER et al., 1991 Purification and properties of an aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium. Eur. J. Biochem. 195: 369-375.
29. MURAKAMI, Y., M. NAITOU, H. HAGIWARA, T. SHIBATA, M. OZAWA et al., 1995 Analysis of the nucleotide sequence of chromosome VI from Saccharomyces cerevisiae. Nat. Genet. 10: 261-268.
30. NAUMOV, G., H. TURAKAINEN, E. NAUMOVA, S. AHO and M. KORHOLA, 1990 A new family of polymorphic genes in Saccharomyces cerevisiae: alpha-galactosidase genes MEL1-MEL7. Mol. Gen. Genet. 224: 119-128.
31. OHNO, S., 1970 Evolution by Gene Duplication. Allen & Unwin, London.
32. OLIVER, S. G., 1995 Size is important, but... Nat. Genet. 10: 253-254.
33. OLIVER, S. G., 1996a From DNA sequence to biological function. Nature 379: 597-600.
34. OLIVER, S. G., 1996b From DNA sequence to biological function: the new "Voyage of the Beagle." Biochem. Soc. Trans. 24: 291-292.
35. OLIVER, S. G., Q. J. VAN DER AART, M. L. AGOSTONI-CARBONE, M. AIGLE, L. ALBERGHINA et al., 1992 The complete DNA sequence of yeast chromosome III. Nature 357: 38-46.
36. PAGE, R. D., 1996 TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12: 357-358.
37. PEARSON, W. R., and D. J. LIPMAN. 1988 Improved tools for biological sequence comparison. Proc. Natl. Acad. Sci. USA 85: 2444-2448.
38. PETES, T. D., L. M. HEREFORD and K. G. SKRYABIN, 1978 Characterisation of two types of yeast ribosomal DNA genes. J. Bacteriol. 134: 295-305.
39. REISER, J., A. MUHFIM, M. HARDEGGER, G. FRANK and A. FIECHTER, 1994 Aryl-alcohol dehydrogenase from the white-rot fungus Phanerochaete chrysosporium: gene cloning, sequence analysis, expression, and purification of the recombinant enzyme. J. Biol. Chem. 269: 28152-28159.
40. SIKORSKI, R. S., and P. HIETER, 1989 A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae. Genetics 122: 19-27.
41. STEPHEN, D. W. S., S. L. RIVERS and D. J. JAMIESON, 1995 The role of the YAP1 and YAP2 genes in the regulation of the adaptive oxidative stress responses of Saccharomyces cerevisiae. Mol. Microbiol. 16: 415-423.
42. VAN DYOK, L., A. PASCUAL-AHUIR, B. PURNELLE and A. GOFFEAU, 1995 An 8.2 kb DNA segment from chromosome XIV carries the RPD3 and PAS8 genes as well as the Saccharomyces cerevisiae homologue of the thiamine-repressed nMtl gene and a chromosome III-duplicated gene for a putative aryl-alcohol dehydrogenase. Yeast 11:987-991.
43. WARNER, J. R., 1989 Synthesis of ribosomes in Saccharomyces cerevisiae. Microbiol. Rev. 53: 256-271.
44. 2 and diamide. J. Biol. Chem. 272: 7908-7914.
45. WICKSTEED, B. L., I. COLLINS, A. DERSHOWTTZ, L. I. STATEVA, R. P. GREEN et al., 1994 A physical comparison of chromosome III in six strains of Saccharomyces cerevisiae. Yeast 10: 39-57.
46. WOLFE, K. H., and D. C. SHIELDS, 1997 Molecular evidence for an ancient duplication of the entire yeast genome. Nature 387: 708-713.