Evolution of the cycloidea gene family in Antirrhinum and Misopates

Molecular Biology and Evolution

Volumn 16, Issue 11, 1999, Pages 1474-1483

  Vieira, Cristina P ^a   Vieira, Jorge ^a   Charlesworth, Deborah ^a  

^a UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

Antirrhinum; Cycloidea; DNA sequence variation; Gene family

Indexed keywords

ARTICLE; DNA SEQUENCE; EVOLUTION; GENE AMPLIFICATION; GENETIC ANALYSIS; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PLANT; POLYMERASE CHAIN REACTION; TRANSPOSON;

ANTIRRHINUM; CYMBALARIA; DIGITALIS; LINARIA; MISOPATES;

EID: 0032733828     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a026059     Document Type: Article

References (50)

1. ALTSCHUL, S. F., T. L. MADDEN, A. A. SCHÄFFER, J. ZHANG, Z. ZHANG, W. MILLER, and D. J. LIPMAN. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
2. AWADALLA, P., and K. RITLAND. 1997. Microsatellite variation and evolution in the Mimulus guttatus species complex with contrasting mating systems. Mol. Biol. Evol. 14:1023-1034.
3. BEGUN, D. J., and C. F. AQUADRO. 1992. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature 356:519-520.
4. BOYES, D. C., M. E. NASRALLAH, J. VREBALOV, and J. B. NASRALLAH. 1997. The self-incompatibility (S) haplotypes of Brassica contain highly divergent and rearranged sequences of ancient origin. Plant Cell 9:237-247.
5. CARPENTER, R., and E. S. COEN. 1990. Floral homeotic mutations produced by transposon-mutagenesis in Antirrhinum majus. Genes Dev. 4:1483-1493.
6. CHARLESWORTH, B., M. NORDBORG, and D. CHARLESWORTH. 1997. The effects of local selection, balanced polymorphism and background selection on equilibrium patterns of genetic diversity in subdivided populations. Genet. Res. 70:155-174.
7. CHARLESWORTH, D., and P. AWADALLA. 1998. The molecular population genetics of flowering plant self-incompatibility polymorphisms. Heredity 81:1-9.
8. CHARLESWORTH, D., and B. CHARLESWORTH. 1998. Sequence variation: looking for effects of genetic linkage. Curr. Biol. 8:R658-R661.
9. CHARLESWORTH, D., and Z. YANG. 1998. Allozyme diversity in Leavenworthia populations with different inbreeding levels. Heredity 81:453-461.
10. CHASE, M. W., D. E. SOLTIS, R. G. OLMSTEAD et al. (42 coauthors). 1993. Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann. Mo. Bot. Gard. 80:528-580.
11. COLEMAN, C. A., and T.-H. KAO. 1992. The flanking regions of Petunia inflata S alleles are heterogeneous and contain repetitive sequences. Plant Mol. Biol. 18:725-737.
12. CRANE, P. R., E. M. FRIIS, and K. R. PEDERSEN. 1995. The origin and early diversification of angiosperms. Nature 374: 27-33.
13. CUMMINGS, M. P., and M. T. CLEGG. 1998. Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): an evaluation of the background selection hypothesis. Proc. Natl. Acad. Sci. USA 95:5637-5642.
14. DOAIGEY, A. R., and K. J. HARKISS. 1991. Application of epidermal characters to the taxonomy of European species of Antirrhinum (Schrophulariaceae). Nord. J. Bot. 11:513-524.
15. FRANCO, J. A. 1971. Nova Flora de Portugal (Continente e Açores): 1. Asa Editores. Lisboa, Portugal.
16. GALLOWAY, G. L., R. L. MALMBERG, and R. A. PRICE. 1998. Phylogenetic utility of the nuclear gene Arginine decarboxylase: an example from Brassicaceae. Mol. Biol. Evol. 15: 1312-1320.
17. GAUT, B. S., B. R. MORTON, B. C. MCCAIG, and M. T. CLEGG. 1996. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc. Natl. Acad. Sci. USA 93:10274-10279.
18. GILBERT, D. G. 1995. Seqpup version 0.6f: a biosequence editor and analysis application. http://sunsite.sut.ac.jp/pub/ academic/biology/molbio/seqp up/.
19. GOREMYKIN, V. V., S. HANSMANN, and W. F. MARTIN. 1997. Evolutionary analysis of 58 proteins encoded in six completely sequenced chloroplast genomes: revised molecular estimates of two seed plant divergence times. Plant Syst. Evol. 206:337-351.
20. HALLIDAY, G. and M. BEADLE. 1983. Flora Europaea. Cambridge University Press, Cambridge, England.
21. HAMRICK, J. L., and M. J. GODT. 1996. Effects of life history traits on genetic diversity in plant species. Philos. Trans. R. Soc. Lond. B Biol. Sci. 351:1291-1298.
22. HARRISON, B. J., and L. A. DARBY. 1955. Uninateral hybridization. Nature 176:982.
23. HERRMANN, V. H. 1973. Selbst-und kreuzungsinkompatibilitat verschiedener Antirrhinum-arten. Biol. Zentralbl. 92:773-777.
24. HEYWOOD, V. H. 1985. Flowering plants of the world. Croom Helm Publishers, Oxford, England.
25. HUGHES, A., and M. YEAGER. 1998. Natural selection and the evolutionary history of the major histocompatibility complex loci. Front. Biosci. 3:510-516.
26. HUTTLEY, G. A., M. L. DURBIN, D. E. GLOVER, and M. T. CLEGG. 1997. Nucleotide polymorphism in the chalcone synthase-A locus and evolution of the chalcone synthase multigene family of common morning glory Ipomoea purpurea. Mol. Ecol. 6:549-558.
27. INGRAM, G. C., S. DOYLE, R. CARPENTER, E. A. SCHULTZ, R. SIMON, and E. S. COEN. 1997. Dual role for fimbriata in regulating floral homeotic genes and cell division in Antirrhinum.. EMBO J. 16:6521-6534.
28. KRAMER, E. M., R. L. DORIT, and V. F. IRISH. 1998. Molecular evolution of genes controlling petal and stamen development: duplication and divergence within the APETALA3 and PISTILLATA MADS-box gene lineages. Genetics 149: 765-783.
29. KUMAR, S., K. TAMURA, and M. NEI. 1994. MEGA - molecular evolutionary genetics analysis software for microcomputers. Comput. Appl. Biosci. 10:189-191.
30. LI, W.-H. 1997. Molecular evolution. Sinauer, Sunderland, Mass.
31. LIU, F-L., D. CHARLESWORTH, and M. KREITMAN. 1998. Joint influence of mating system and selection on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia. Genetics 151:343-357.
32. LIU, F-L., L. ZHANG, and D. CHARLESWORTH. 1998. Genetic diversity in Leavenworthia populations with different inbreeding levels. Proc. R. Soc. Lond. B Biol. Sci. 265:293-301.
33. LUO, D., R. CARPENTER, C. VINCENT, L. COPSEY, and E. COEN. 1995. Origin of floral asymmetry in Antirrhinum. Nature 383:794-799.
34. MATHER, K. 1947. Species crosses in Antirrhinum. I. genetic isolation of the species majus, glutinosum, and orontium. Heredity 1:175-186.
35. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
36. REEVES, P. A., and R. G. OLMSTEAD. 1998. Evolution of novel morphological and reproductive traits in a clade containing Antirrhinum majus (Scrophulariaceae). Am. J. Bot. 85: 1047-1056.
37. ROZAS, J., and R. ROZAS. 1997. DnaSP version 2.0: a novel software package for extensive molecular population genetics analysis. Comput. Appl. Biosci. 13:307-311.
38. ROTHMALER, W. 1956. Taxonomische monographie der gattung Antirrhinum. Feddes Rep. 136:1-134.
39. SANMIGUEL, P., A. TIKHONOV, Y. K. JIN et al. (11 co-authors). 1997. Nested retrotransposons in the intergenic regions of the maize genome. Science 274:765-768.
40. SCHOEN, D. J., and A. H. D. BROWN. 1991. Intraspecific variation in population gene diversity and effective population size correlates with the mating system in plants. Proc. Natl. Acad. Sci. USA 88:4494-4497.
41. SMALL, R. L., J. A. RYBURN, and J. F. WENDEL. 1999. Low levels of nucleotide diversity at homoeologous Adh loci in allotretraploid cotton (Gossypium L.). Mol. Biol. Evol. 16: 491-501.
42. STEPHAN, W., and C. H. LANGLEY. 1998. DNA polymorphism in Lycopersicon and crossing-over per physical length. Genetics 150:1585-1593.
43. SUN, G., D. L. DILCHER, S. ZHENG, and Z. ZHOU. 1998. In search of the first flower: a Jurassic angiosperm, Archaefructus, from northeast China. Science 282:1692-1695.
44. SUTTON, D. A. 1988. A revision of the tribe Antirrhineae. Oxford University Press, London.
45. THOMPSON, J. T., J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, and D. G. HIGGINS. 1997. The ClustalX window interface: flexible stategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:4876-4882.
46. VON WETTSTEIN, R. 1891. Antirrhinum. Pp. 3b, 37 in H. G. A. ENGLER and K. E. PRANTL, eds. Die naturlichen pflanzenfamilien. Vol. 4. Verlag W. Engelmann, Leipzig.
47. WANG, R. L., A. STEC, J. HEY, L. LUKENS, and J. DOEBLEY. 1999. The limits of selection during maize domestication. Nature 398:236-239.
48. WOLFE, A. D., and C. W. DEPAMPHILIS. 1998. The effect of relaxed functional constraints on the photosynthetic gene rbcL in photosyntethic and nonphotosynthetic parasitic plants. Mol. Biol. Evol. 15:1243-1258.
49. WOLFE, K. H., P. M. SHARP, and W-H. LI. 1989. Rates of synonymous substitution in plant nuclear genes. J. Mol. Evol. 29:208-211.
50. XUE, Y., R. CARPENTER, H. G. DICKINSON, and E. S. COEN. 1996. Origin of allelic diversity in Antirrhinum S locus RNAse. Plant Cell 8:805-814.