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Volumn 13, Issue 3, 1997, Pages 307-311

DnaSP version 2.0: A novel software package for extensive molecular population genetics analysis

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DNA POLYMORPHISM; DNA SEQUENCE; EVOLUTION; GENE CONVERSION; GENE LINKAGE DISEQUILIBRIUM; GENETIC RECOMBINATION; MOLECULAR GENETICS; NEUTRAL GENE THEORY; POPULATION GENETICS; PRIORITY JOURNAL;

EID: 0030960257     PISSN: 02667061     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (255)

References (33)
  • 1
    • 0030902601 scopus 로고    scopus 로고
    • The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data
    • in press
    • Betrán, E., Rozas, J., Navarro, A. and Barbadilla, A. (1997) The estimation of the number and the length distribution of gene conversion tracts from population DNA sequence data. Genetics, in press.
    • (1997) Genetics
    • Betrán, E.1    Rozas, J.2    Navarro, A.3    Barbadilla, A.4
  • 2
    • 0027453041 scopus 로고
    • Statistical tests of neutrality of mutations
    • Fu, Y.-X. and Li, W.-H. (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
    • (1993) Genetics , vol.133 , pp. 693-709
    • Fu, Y.-X.1    Li, W.-H.2
  • 5
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill, W.G. and Robertson, A. (1968) Linkage disequilibrium in finite populations. Theor. Appl. Genet., 38, 226-231.
    • (1968) Theor. Appl. Genet. , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 6
    • 0023612034 scopus 로고
    • Estimating the recombination parameter of a finite population model without selection
    • Hudson, R.R. (1987) Estimating the recombination parameter of a finite population model without selection. Genet. Res., 50, 245-250.
    • (1987) Genet. Res. , vol.50 , pp. 245-250
    • Hudson, R.R.1
  • 7
    • 0022211482 scopus 로고
    • Statistical properties of the number of recombination events in the history of a sample of DNA sequences
    • Hudson, R.R. and Kaplan, N.L. (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics, 111, 147-164.
    • (1985) Genetics , vol.111 , pp. 147-164
    • Hudson, R.R.1    Kaplan, N.L.2
  • 8
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • Hudson, R.R., Kreitman, M. and Aguade, M. (1987) A test of neutral molecular evolution based on nucleotide data. Genetics, 116, 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguade, M.3
  • 9
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • Hudson, R.R., Slatkin, M. and Maddison, W.P. (1992) Estimation of levels of gene flow from DNA sequence data. Genetics, 132, 583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 10
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H.N. (ed.), Academic Press, New York
    • Jukes, T.H. and Cantor, C.R. (1969) Evolution of protein molecules. In Munro, H.N. (ed.), Mammalian Protein Metabolism. Academic Press, New York, pp. 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 12
    • 0028294049 scopus 로고
    • MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers
    • Kumar, S., Tamura, K. and Nei, M. (1994) MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers. Comput. Applic. Biosci., 10, 189-191.
    • (1994) Comput. Applic. Biosci. , vol.10 , pp. 189-191
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 13
    • 0016144327 scopus 로고
    • Linkage disequilibrium in natural populations of Drosophila melanogaster
    • Langley, C.H., Tobari, Y.N. and Kojima, K. (1974) Linkage disequilibrium in natural populations of Drosophila melanogaster. Genetics, 78, 921-936.
    • (1974) Genetics , vol.78 , pp. 921-936
    • Langley, C.H.1    Tobari, Y.N.2    Kojima, K.3
  • 14
    • 0002907949 scopus 로고
    • The interaction of selection and linkage. I. General considerations: Heterotic models
    • Lewontin, R.C. (1964) The interaction of selection and linkage. I. General considerations: heterotic models. Genetics, 49, 49-67.
    • (1964) Genetics , vol.49 , pp. 49-67
    • Lewontin, R.C.1
  • 15
    • 0000951097 scopus 로고
    • The evolutionary dynamics of complex polymorphisms
    • Lewontin, R.C. and Kojima, K. (1960) The evolutionary dynamics of complex polymorphisms. Evolution, 14, 458-472.
    • (1960) Evolution , vol.14 , pp. 458-472
    • Lewontin, R.C.1    Kojima, K.2
  • 16
    • 0025289181 scopus 로고
    • The analysis of population survey data on DNA sequence variation
    • Lynch, M. and Crease, T.J. (1990) The analysis of population survey data on DNA sequence variation. Mol. Biol. Evol., 7, 377-394.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 377-394
    • Lynch, M.1    Crease, T.J.2
  • 18
    • 0031350056 scopus 로고    scopus 로고
    • NEXUS: An extendible file format for systematic information
    • in press
    • Maddison, W.P., Swofford, D.L. and Maddison, D.R. (1997) NEXUS: an extendible file format for systematic information. System. Biol., in press.
    • (1997) System. Biol.
    • Maddison, W.P.1    Swofford, D.L.2    Maddison, D.R.3
  • 19
    • 0020348983 scopus 로고
    • Evolution of human races at the gene level
    • Bonne-Tamir, B., Cohen, T. and Goodman, R.M. (eds.), Alan R.Liss, New York
    • Nei, M. (1982) Evolution of human races at the gene level. In Bonne-Tamir, B., Cohen, T. and Goodman, R.M. (eds.), Human Genetics, Part A: The Unfolding Genome. Alan R.Liss, New York, pp. 167-181.
    • (1982) Human Genetics, Part A: The Unfolding Genome , pp. 167-181
    • Nei, M.1
  • 21
    • 0022507362 scopus 로고
    • Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
    • Nei, M. and Gojobori, T. (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol. Biol. Evol., 3, 418-426.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 418-426
    • Nei, M.1    Gojobori, T.2
  • 22
    • 0027240333 scopus 로고
    • Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements
    • Rozas, J. and Aguadé, M. (1993) Transfer of genetic information in the rp49 region of Drosophila subobscura between different chromosomal gene arrangements. Proc. Natl Acad. Sci. USA, 90, 8083-8087.
    • (1993) Proc. Natl Acad. Sci. USA , vol.90 , pp. 8083-8087
    • Rozas, J.1    Aguadé, M.2
  • 23
    • 0028116053 scopus 로고
    • Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila
    • Rozas, J and Aguadé, M. (1994) Gene conversion is involved in the transfer of genetic information between naturally occurring inversions of Drosophila. Proc. Natl Acad. Sci. USA, 91, 11517-11521.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11517-11521
    • Rozas, J.1    Aguadé, M.2
  • 24
    • 0029594594 scopus 로고
    • DnaSP, DNA sequence polymorphism: An interactive program for estimating population genetics parameters from DNA sequence data
    • Rozas, J. and Rozas, R. (1995) DnaSP, DNA sequence polymorphism: an interactive program for estimating population genetics parameters from DNA sequence data. Comput. Applic. Biosci., 11, 621-625.
    • (1995) Comput. Applic. Biosci. , vol.11 , pp. 621-625
    • Rozas, J.1    Rozas, R.2
  • 26
    • 0029099781 scopus 로고
    • Properties of statistical tests of neutrality for DNA polymorphism data
    • Simonsen, K.L., Churchill, G.A. and Aquadro, C.F. (1995) Properties of statistical tests of neutrality for DNA polymorphism data. Genetics, 141, 413-429.
    • (1995) Genetics , vol.141 , pp. 413-429
    • Simonsen, K.L.1    Churchill, G.A.2    Aquadro, C.F.3
  • 28
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima, F. (1983) Evolutionary relationship of DNA sequences in finite populations. Genetics, 105, 437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 29
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123, 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 30
    • 0002747469 scopus 로고
    • Measurement of DNA polymorphism
    • Takahata, N. and Clark, A.G. (eds). Sinauer Associates, Inc., Sunderland, MA
    • Tajima, F. (1993) Measurement of DNA polymorphism. In Takahata, N. and Clark, A.G. (eds). Mechanisms of Molecular Evolution. Sinauer Associates, Inc., Sunderland, MA, pp. 37-59.
    • (1993) Mechanisms of Molecular Evolution , pp. 37-59
    • Tajima, F.1
  • 31
    • 0030014298 scopus 로고    scopus 로고
    • The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites
    • Tajima, F. (1996) The amount of DNA polymorphism maintained in a finite population when the neutral mutation rate varies among sites. Genetics, 143, 1457-1465.
    • (1996) Genetics , vol.143 , pp. 1457-1465
    • Tajima, F.1
  • 32
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J.D., Higgins, D.G. and Gibson, T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 33
    • 84890417804 scopus 로고
    • The genetical structure of populations
    • Wright, S. (1951) The genetical structure of populations. Ann. Eugenics, 15, 323-354.
    • (1951) Ann. Eugenics , vol.15 , pp. 323-354
    • Wright, S.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.