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Volumn 262, Issue 4, 1996, Pages 421-436

RNA sequence determinants for aminoglycoside binding to an A-site rRNA model oligonucleotide

Author keywords

Aminoglycoside antibiotics; Antibiotic resistance; Decoding region; Ribosomal RNA; RNA ligand interaction

Indexed keywords

AMINOGLYCOSIDE ANTIBIOTIC AGENT; GENTAMICIN; KANAMYCIN; NEAMINE; NEOMYCIN; OLIGONUCLEOTIDE; PAROMOMYCIN; RIBOSOME RNA; RIBOSTAMYCIN; RNA 16S; STREPTOMYCIN;

EID: 1842388479     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0526     Document Type: Article
Times cited : (238)

References (46)
  • 1
    • 0029082529 scopus 로고
    • Structure of the P1 helix from group I self-splicing introns
    • Allain, F. H.-T. & Varani, G. (1995). Structure of the P1 helix from group I self-splicing introns. J. Mol. Biol. 250, 333-353.
    • (1995) J. Mol. Biol. , vol.250 , pp. 333-353
    • Allain, F.H.-T.1    Varani, G.2
  • 2
    • 0028268016 scopus 로고
    • Binding of an HIV Rev peptide to rev responsive element RNA induces formation of purine-purine base-pairs
    • Battiste, J. L., Tan, R., Frankel, A. D. & Williamson, J. R. (1994). Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base-pairs. Biochemistry, 33, 2741-2747.
    • (1994) Biochemistry , vol.33 , pp. 2741-2747
    • Battiste, J.L.1    Tan, R.2    Frankel, A.D.3    Williamson, J.R.4
  • 3
    • 0023091436 scopus 로고
    • Sites of action of two ribosomal RNA methylases responsible for resistance to aminoglycosides
    • Beauclerk, A. A. D. & Cundliffe, E. (1987). Sites of action of two ribosomal RNA methylases responsible for resistance to aminoglycosides. J. Mol. Biol. 193, 661-671.
    • (1987) J. Mol. Biol. , vol.193 , pp. 661-671
    • Beauclerk, A.A.D.1    Cundliffe, E.2
  • 4
    • 0002331708 scopus 로고
    • Recognition sites for antibiotics within rRNA
    • (Hill, W. E., Dahlberg, A., Garrett, R. A., Moore, P. B., Schlessinger, D. & Warner, J. R., eds), American Society for Microbiology, Washington DC
    • Cundliffe, E. (1990). Recognition sites for antibiotics within rRNA. In The Ribosome: Structure, Function and Evolution (Hill, W. E., Dahlberg, A., Garrett, R. A., Moore, P. B., Schlessinger, D. & Warner, J. R., eds), pp. 479-490, American Society for Microbiology, Washington DC.
    • (1990) The Ribosome: Structure, Function and Evolution , pp. 479-490
    • Cundliffe, E.1
  • 5
    • 0026620038 scopus 로고
    • Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function
    • Cunningham, P. R., Nurse, K., Bakin, A., Weitzmann, C. J., Pflumm, M. & Ofengand, J. (1992a). Interaction between the two conserved single-stranded regions at the decoding site of small subunit ribosomal RNA is essential for ribosome function. Biochemistry, 31, 12012-12022.
    • (1992) Biochemistry , vol.31 , pp. 12012-12022
    • Cunningham, P.R.1    Nurse, K.2    Bakin, A.3    Weitzmann, C.J.4    Pflumm, M.5    Ofengand, J.6
  • 6
    • 0026803328 scopus 로고
    • G1401: A keystone nucleotide at the decoding site of Escherichia coli 30 S ribosomes
    • Cunningham, P. R., Nurse, K., Weitzmann, C. J., Negre, D. & Ofengand, J. (1992b). G1401: a keystone nucleotide at the decoding site of Escherichia coli 30 S ribosomes. Biochemistry, 31, 7629-7637.
    • (1992) Biochemistry , vol.31 , pp. 7629-7637
    • Cunningham, P.R.1    Nurse, K.2    Weitzmann, C.J.3    Negre, D.4    Ofengand, J.5
  • 7
    • 0027282806 scopus 로고
    • Functional effects of base changes which further define the decoding center of Escherichia coli 16 S ribosomal RNA. Mutation of C1404, G1405, C1496, G1497, U1498
    • Cunningham, P. R., Nurse, K., Weitzmann, C. J. & Ofengand, J. (1993). Functional effects of base changes which further define the decoding center of Escherichia coli 16 S ribosomal RNA. Mutation of C1404, G1405, C1496, G1497, U1498. Biochemistry, 32, 7172-7180.
    • (1993) Biochemistry , vol.32 , pp. 7172-7180
    • Cunningham, P.R.1    Nurse, K.2    Weitzmann, C.J.3    Ofengand, J.4
  • 8
    • 0014429801 scopus 로고
    • Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics
    • Davies, J. & Davis, B. D. (1968). Misreading of ribonucleic acid code words induced by aminoglycoside antibiotics. J. Biol. Chem. 243, 3312-3316.
    • (1968) J. Biol. Chem. , vol.243 , pp. 3312-3316
    • Davies, J.1    Davis, B.D.2
  • 9
    • 0002751916 scopus 로고
    • Misreading of RNA codewords induced by aminoglycoside antibiotics
    • Davies, J., Gorini, L. & Davis, B. D. (1965). Misreading of RNA codewords induced by aminoglycoside antibiotics. Mol. Pharmacol. 1, 93-106.
    • (1965) Mol. Pharmacol. , vol.1 , pp. 93-106
    • Davies, J.1    Gorini, L.2    Davis, B.D.3
  • 10
    • 0013914739 scopus 로고
    • A further study of misreading of codons induced by streptomycin and neomycin using ribopolynucleotides containing two nucleotides in alternating sequence as templates
    • Davies, J., Jones, D. S. & Khorana, H. G. (1966). A further study of misreading of codons induced by streptomycin and neomycin using ribopolynucleotides containing two nucleotides in alternating sequence as templates. J. Mol. Biol. 18, 48-57.
    • (1966) J. Mol. Biol. , vol.18 , pp. 48-57
    • Davies, J.1    Jones, D.S.2    Khorana, H.G.3
  • 11
    • 0024498489 scopus 로고
    • In vitro assembly of 30 S and 70 S bacterial ribosomes from 16 S RNA containing single base substitutions, insertions, and deletions around the decoding site (C1400)
    • Denman, R., Weitzmann, C., Cunningham, P. R., Negre, D., Nurse, K., Colgan, J., Pan, Y., Miedel, M. & Ofengand, J. (1989). In vitro assembly of 30 S and 70 S bacterial ribosomes from 16 S RNA containing single base substitutions, insertions, and deletions around the decoding site (C1400). Biochemistry, 28, 1002-1011.
    • (1989) Biochemistry , vol.28 , pp. 1002-1011
    • Denman, R.1    Weitzmann, C.2    Cunningham, P.R.3    Negre, D.4    Nurse, K.5    Colgan, J.6    Pan, Y.7    Miedel, M.8    Ofengand, J.9
  • 12
    • 0025305692 scopus 로고
    • Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA
    • DeStasio, E. A. & Dahlberg, A. E. (1990). Effects of mutagenesis of a conserved base-paired site near the decoding region of Escherichia coli 16 S ribosomal RNA. J. Mol. Biol. 212, 127-133.
    • (1990) J. Mol. Biol. , vol.212 , pp. 127-133
    • DeStasio, E.A.1    Dahlberg, A.E.2
  • 13
    • 0024424033 scopus 로고
    • Mutations in 16 S ribosomal RNA disrupt antibiotic-RNA interactions
    • DeStasio, E. A., Moazed, D., Noller, H. F. & Dahlberg, A. E. (1989). Mutations in 16 S ribosomal RNA disrupt antibiotic-RNA interactions. EMBO J. 8, 1213-1216.
    • (1989) EMBO J. , vol.8 , pp. 1213-1216
    • DeStasio, E.A.1    Moazed, D.2    Noller, H.F.3    Dahlberg, A.E.4
  • 15
    • 0023216779 scopus 로고
    • In vitro synthesis of 16 S ribosomal RNA containing single base changes and assembly into a functional 30 S ribosome
    • Krzyzosiak, W., Denman, R., Nurse, K., Hellmann, W., Boublik, M., Gehrke, C. W., Agris, P. F. & Ofengand, J. (1987). In vitro synthesis of 16 S ribosomal RNA containing single base changes and assembly into a functional 30 S ribosome. Biochemistry, 26, 2353-2364.
    • (1987) Biochemistry , vol.26 , pp. 2353-2364
    • Krzyzosiak, W.1    Denman, R.2    Nurse, K.3    Hellmann, W.4    Boublik, M.5    Gehrke, C.W.6    Agris, P.F.7    Ofengand, J.8
  • 16
    • 0028237035 scopus 로고
    • Stabilization of RNA structure by Mg ions: Specific and non-specific effects
    • Laing, L. G., Gluick, T. C. & Draper, D. E. (1994). Stabilization of RNA structure by Mg ions: specific and non-specific effects. J. Mol. Biol. 237, 577-587.
    • (1994) J. Mol. Biol. , vol.237 , pp. 577-587
    • Laing, L.G.1    Gluick, T.C.2    Draper, D.E.3
  • 17
    • 0019908820 scopus 로고
    • Identification of the paromomycin-resistance mutation in the 15 S rRNA gene of yeast mitochondria
    • Li, M., Tzagoloff, A., Underbrink-Lyon, K. & Martin, N. (1982). Identification of the paromomycin-resistance mutation in the 15 S rRNA gene of yeast mitochondria. J. Biol. Chem. 257, 5921-5928.
    • (1982) J. Biol. Chem. , vol.257 , pp. 5921-5928
    • Li, M.1    Tzagoloff, A.2    Underbrink-Lyon, K.3    Martin, N.4
  • 18
    • 0022916242 scopus 로고
    • Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes
    • Moazed, D. & Noller, H. F. (1986). Transfer RNA shields specific nucleotides in 16 S ribosomal RNA from attack by chemical probes. Cell, 47, 985-994.
    • (1986) Cell , vol.47 , pp. 985-994
    • Moazed, D.1    Noller, H.F.2
  • 19
    • 0023238983 scopus 로고
    • Interaction of antibiotics with functional sites in 16 S ribosomal RNA
    • Moazed, D. & Noller, H. F. (1987). Interaction of antibiotics with functional sites in 16 S ribosomal RNA. Nature, 327, 389-394.
    • (1987) Nature , vol.327 , pp. 389-394
    • Moazed, D.1    Noller, H.F.2
  • 20
    • 0025070318 scopus 로고
    • Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA
    • Moazed, D. & Noller, H. F. (1990). Binding of tRNA to the ribosomal A and P sites protects two distinct sets of nucleotides in 16 S rRNA. J. Mol. Biol. 211, 135-145.
    • (1990) J. Mol. Biol. , vol.211 , pp. 135-145
    • Moazed, D.1    Noller, H.F.2
  • 21
    • 0022470564 scopus 로고
    • Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
    • Moazed, D., Stern, S. & Noller, H. F. (1986). Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J. Mol. Biol. 187, 399-416.
    • (1986) J. Mol. Biol. , vol.187 , pp. 399-416
    • Moazed, D.1    Stern, S.2    Noller, H.F.3
  • 22
    • 0026760182 scopus 로고
    • The crisis in antibiotic resistance
    • Neu, H. C. (1992). The crisis in antibiotic resistance. Science, 257, 1064-1073.
    • (1992) Science , vol.257 , pp. 1064-1073
    • Neu, H.C.1
  • 23
    • 0025733603 scopus 로고
    • Ribosomal RNA and translation
    • Noller, H. F. (1991). Ribosomal RNA and translation. Annu. Rev. Biochem. 60, 191-227.
    • (1991) Annu. Rev. Biochem. , vol.60 , pp. 191-227
    • Noller, H.F.1
  • 24
    • 0017821060 scopus 로고
    • Mistranslation in a eucaryotic organism
    • Palmer, E. & Wilhelm, J. M. (1978). Mistranslation in a eucaryotic organism. Cell, 13, 329-334.
    • (1978) Cell , vol.13 , pp. 329-334
    • Palmer, E.1    Wilhelm, J.M.2
  • 25
    • 0018379922 scopus 로고
    • Phenotypic suppression of nonsense mutants in yeast by aminoglycoside antibiotics
    • Palmer, E., Wilhelm, J. M. & Sherman, F. (1979). Phenotypic suppression of nonsense mutants in yeast by aminoglycoside antibiotics. Nature, 277, 148-150.
    • (1979) Nature , vol.277 , pp. 148-150
    • Palmer, E.1    Wilhelm, J.M.2    Sherman, F.3
  • 26
    • 0018459544 scopus 로고
    • Direct chemical method for sequencing RNA
    • Peattie, D. A. (1979). Direct chemical method for sequencing RNA. Proc. Natl Acad. Sci. USA, 76, 1760-1764.
    • (1979) Proc. Natl Acad. Sci. USA , vol.76 , pp. 1760-1764
    • Peattie, D.A.1
  • 27
    • 0019051754 scopus 로고
    • Chemical probes for higher-order structure in RNA
    • Peattie, D. A. & Gilbert, W. (1980). Chemical probes for higher-order structure in RNA. Proc. Natl Acad. Sci. USA, 77, 4679-4682.
    • (1980) Proc. Natl Acad. Sci. USA , vol.77 , pp. 4679-4682
    • Peattie, D.A.1    Gilbert, W.2
  • 28
    • 0028157659 scopus 로고
    • The 530 loop of 16 S rRNA: A signal to EF-Tu?
    • Powers, T. & Noller, H. F. (1994a). The 530 loop of 16 S rRNA: a signal to EF-Tu? Trends Genet. 10, 27-31.
    • (1994) Trends Genet. , vol.10 , pp. 27-31
    • Powers, T.1    Noller, H.F.2
  • 29
    • 0028090796 scopus 로고
    • Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12
    • Powers, T. & Noller, H. F. (1994b). Selective perturbation of G530 of 16 S rRNA by translational miscoding agents and a streptomycin-dependence mutation in protein S12. J. Mol. Biol. 235, 156-172.
    • (1994) J. Mol. Biol. , vol.235 , pp. 156-172
    • Powers, T.1    Noller, H.F.2
  • 30
    • 0029286628 scopus 로고
    • Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA
    • Powers, T. & Noller, H. F. (1995). Hydroxyl radical footprinting of ribosomal proteins on 16 S rRNA. RNA, 1, 194-209.
    • (1995) RNA , vol.1 , pp. 194-209
    • Powers, T.1    Noller, H.F.2
  • 31
    • 0028820398 scopus 로고
    • Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots
    • Puglisi, J. D. & Wyatt, J. R. (1995). Biochemical and NMR studies of RNA conformation with an emphasis on RNA pseudoknots. Methods Enzymol. 261, 323-350.
    • (1995) Methods Enzymol. , vol.261 , pp. 323-350
    • Puglisi, J.D.1    Wyatt, J.R.2
  • 32
    • 0026651395 scopus 로고
    • Conformation of the TAR RNA-arginine complex by NMR spectroscopy
    • Puglisi, J. D., Tan, R., Calnan, B. J., Frankel, A. D. & Williamson, J. R. (1992). Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science, 257, 76-80.
    • (1992) Science , vol.257 , pp. 76-80
    • Puglisi, J.D.1    Tan, R.2    Calnan, B.J.3    Frankel, A.D.4    Williamson, J.R.5
  • 33
    • 0028090464 scopus 로고
    • NMR analysis of tRNA acceptor stem microhelices: Discriminator base change affects tRNA conformation at the 3′ end
    • Puglisi, E. V., Puglisi, J. D., Williamson, J. R. & RajBhandary, U. L. (1994). NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3′ end. Proc. Natl Acad. Sci. USA, 91, 11467-11471.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 11467-11471
    • Puglisi, E.V.1    Puglisi, J.D.2    Williamson, J.R.3    RajBhandary, U.L.4
  • 34
    • 0028138280 scopus 로고
    • Interactions of a small RNA with antibiotic and RNA ligands of the 30 S subunit
    • Purohit, P. & Stern, S. (1994). Interactions of a small RNA with antibiotic and RNA ligands of the 30 S subunit. Nature, 370, 659-662.
    • (1994) Nature , vol.370 , pp. 659-662
    • Purohit, P.1    Stern, S.2
  • 35
    • 0027979072 scopus 로고
    • Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA
    • Samaha, R. R., O'Brien, B., O'Brien, T. W. & Noller, H. F. (1994). Independent in vitro assembly of a ribonucleoprotein particle containing the 3′ domain of 16 S rRNA. Proc. Natl Acad. Sci. USA, 91, 7884-7888.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 7884-7888
    • Samaha, R.R.1    O'Brien, B.2    O'Brien, T.W.3    Noller, H.F.4
  • 36
    • 12044251259 scopus 로고
    • Solvent suppression with symmetrically-shifted pulses
    • Smallcombe, S. H. (1993). Solvent suppression with symmetrically-shifted pulses. J. Am. Chem. Soc. 115, 4776-4785.
    • (1993) J. Am. Chem. Soc. , vol.115 , pp. 4776-4785
    • Smallcombe, S.H.1
  • 37
    • 0021892944 scopus 로고
    • The nucleotide sequence of the 17 S ribosomal RNA gene of Tetrahymena thermophila and the identification of point mutations resulting in resistance to the antibiotics paromomycin and hygromycin
    • Spangler, E. A. & Blackburn, E. H. (1985). The nucleotide sequence of the 17 S ribosomal RNA gene of Tetrahymena thermophila and the identification of point mutations resulting in resistance to the antibiotics paromomycin and hygromycin. J. Biol. Chem. 260, 6334-6340.
    • (1985) J. Biol. Chem. , vol.260 , pp. 6334-6340
    • Spangler, E.A.1    Blackburn, E.H.2
  • 38
    • 0024241761 scopus 로고
    • Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension
    • Stern, S., Moazed, D. & Noller, H. F. (1988). Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension. Methods Enzymol. 164, 481-489.
    • (1988) Methods Enzymol. , vol.164 , pp. 481-489
    • Stern, S.1    Moazed, D.2    Noller, H.F.3
  • 39
    • 0028953727 scopus 로고
    • The sarcin/ ricin loop, a modular RNA
    • Szewczak, A. A. & Moore, P. B. (1995). The sarcin/ ricin loop, a modular RNA. J. Mol. Biol. 247, 81-98.
    • (1995) J. Mol. Biol. , vol.247 , pp. 81-98
    • Szewczak, A.A.1    Moore, P.B.2
  • 40
    • 0024297116 scopus 로고
    • Mutations within the decoding site of Escherichia coli 16 S rRNA: Growth rate impairment, lethality and intragenic suppression
    • Thomas, C. L., Gregory, R. J., Winslow, G., Muto, A. & Zimmermann, R. A. (1988). Mutations within the decoding site of Escherichia coli 16 S rRNA: growth rate impairment, lethality and intragenic suppression. Nucl. Acids Res. 16, 8129-8146.
    • (1988) Nucl. Acids Res. , vol.16 , pp. 8129-8146
    • Thomas, C.L.1    Gregory, R.J.2    Winslow, G.3    Muto, A.4    Zimmermann, R.A.5
  • 42
    • 0025811124 scopus 로고
    • Structure of an unusually stable RNA hairpin
    • Varani, G., Cheong, C. & Tinoco, I., Jr (1991). Structure of an unusually stable RNA hairpin. Biochemistry, 30, 3280-3289.
    • (1991) Biochemistry , vol.30 , pp. 3280-3289
    • Varani, G.1    Cheong, C.2    Tinoco I., Jr.3
  • 43
    • 0017843528 scopus 로고
    • Aminoglycoside antibiotics and eukaryotic protein synthesis: Structure-function relationships in the stimulation of misreading with a wheat embryo system
    • Wilhelm, J. M., Pettitt, S. E. & Jessop, J. J. (1978). Aminoglycoside antibiotics and eukaryotic protein synthesis: structure-function relationships in the stimulation of misreading with a wheat embryo system. Biochemistry, 17, 1143-1149.
    • (1978) Biochemistry , vol.17 , pp. 1143-1149
    • Wilhelm, J.M.1    Pettitt, S.E.2    Jessop, J.J.3
  • 44
    • 0025799785 scopus 로고
    • Interaction of antibiotics with A-and P-site-specific bases in 16 S ribosomal RNA
    • Woodcock, J., Moazed, D., Cannon, M., Davies, J. & Noller, H. F. (1991). Interaction of antibiotics with A-and P-site-specific bases in 16 S ribosomal RNA. EMBO J. 10, 3099-3103.
    • (1991) EMBO J. , vol.10 , pp. 3099-3103
    • Woodcock, J.1    Moazed, D.2    Cannon, M.3    Davies, J.4    Noller, H.F.5
  • 45
    • 0025113514 scopus 로고
    • RNA pseudoknots: Stability and loop size requirements
    • Wyatt, J. R., Puglisi, J. D. & Tinoco, I., Jr (1990). RNA pseudoknots: stability and loop size requirements. J. Mol. Biol. 214, 455-470.
    • (1990) J. Mol. Biol. , vol.214 , pp. 455-470
    • Wyatt, J.R.1    Puglisi, J.D.2    Tinoco I., Jr.3
  • 46
    • 0027370433 scopus 로고
    • Small molecules that selectively block rna binding of HIV-1 rev protein inhibit Rev function and viral production
    • Zapp, M. L., Stern, S. & Green, M. R. (1993). Small molecules that selectively block RNA binding of HIV-1 Rev protein inhibit Rev function and viral production. Cell 74, 969-978.
    • (1993) Cell , vol.74 , pp. 969-978
    • Zapp, M.L.1    Stern, S.2    Green, M.R.3


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