A novel three-dimensional crystal of bacteriorhodopsin obtained by successive fusion of the vesicular assemblies

Journal of Molecular Biology

Volumn 283, Issue 2, 1998, Pages 463-474

  Takeda, Kazuki ^a   Sato, Hidenori ^a   Hino, Tomoya ^a   Kono, Masahiro ^b   Fukuda, Kazuya ^b   Sakurai, Ikuko ^b   Okada, Tetsuji ^a   Kouyama, Tsutomu ^a  

^a 464 8602 ^*  (Japan)

^b INST OF PHYS AND CHEMICAL RESEARCH   (Japan)

Author keywords

Bacteriorhodopsin; Membrane fusion; Membrane morphology; Protein crystallization; X ray crystallography

Indexed keywords

AMMONIUM SULFATE; BACTERIORHODOPSIN; DETERGENT; MEMBRANE PROTEIN;

ABSORPTION SPECTROSCOPY; ARTICLE; ATOMIC FORCE MICROSCOPY; CONTROLLED STUDY; CRYSTALLIZATION; MEMBRANE FUSION; MISCIBILITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; PROTEIN DENATURATION; PROTEIN TERTIARY STRUCTURE; SOLUBILIZATION; X RAY CRYSTALLOGRAPHY;

EID: 0032561127     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1998.2103     Document Type: Article

References (39)

1. Casadio R., Gutowitz H., Mowery M., Taylor M., Stoeckenius W. Light-dark adaptation of bacteriorhodopsin in triton-treated purple membane. Biochim. Biophys. Acta. 590:1980;13-23
2. Casper D.L.D., Klug A. Physical principles in the construction of regular viruses. Cold Spring Harbor Symp. Quant. Biol. 27:1962;1-24
3. Denkov N.D., Yoshimura H., Kouyama T., Walz J., Nagayama K. Electron cryo-microscopy of bacteriorhodopsin vesicles mechanism of vesicle formation. Biophys. J. 74:1998;1409-1420
4. Ebrey T.G. Light energy transduction in bacteriorhodopsin. Jackson M. Thermodynamics of Membrane Receptors and Channels. 1993;353-387 CRC Press, Boca Raton
5. Engelman D.M., Zaccai G. Bacteriorhodopsin is an inside-out protein. Proc. Natl Acad. Sci. USA. 77:1990;5894-5898
6. Fukuda K., Ikegami A., Nasuda-Kouyama A., Kouyama T. Effect of partial delipidation of purple membrane on the photodynamics of bacteriorhodopsin. Biochemistry. 29:1990;1997-2002
7. Glaeser R.M., Jubb J.S., Henderson R. Structural comparison of native and deoxycholate-treated purple memrbane. Biophys. J. 48:1985;775-780
8. Grigorieff N., Ceska T.A., Downing K.H., Baldwin J.M., Henderson R. Electron-crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259:1996;393-421
9. Henderson R., Jubb J.S., Whytock S. Specific labelling of the protein and lipid on the extracellular surface of purple membrane. J. Mol. Biol. 123:1978;259-274
10. Henderson R., Baldwin J.M., Ceska T.A., Zemlin F., Beckmann E., Downing K.H. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213:1990;899-929
11. Heyn M.P., Cherry R.J., Muller U. Transient and linear dichroism studies on bacteriorhodopsin Determination of the orientation of the 568 nm all-trans retinal chromophore. J. Mol. Biol. 117:1977;607-620
12. Höjeberg B., Lind C., Khorana H.G. Reconstitution of bacteriorhodopsin vesicles with halobacterium halobium lipids effects of variations in lipid composition. J. Biol. Chem. 257:1982;1690-1694
13. Israelachvili J.N. Intermolecular and Surface Forces. 2nd edit. :1992;Academic Press, New York
14. Israelachvili J.N., Marcelja S., Horn R.G. Physical principles of membrane organization. Quart. Rev. Biophys. 13:1980;121-200
15. Kelly R.B. Storage and release of neurotransmitters. Cell/Neuron. 72:(10):1993;43-53
16. Kimura Y., Vassylyev D.G., Miyazawa A., Kidera A., Matsushima M., Mitsuoka K., Murata K., Hirai T., Fujiyoshi Y. Surface of bacteriorhodopsin revealed by high-resolution eletron crystallography. Nature. 389:1997;206-211
17. Kouyama T., Kimura Y., Kinosita K. Jr, Ikegami A. Immobility of the chromophore in bacteriorhodopsin. FEBS Letters. 124:1981;100-104
18. Kouyama T., Yamamoto M., Kamiya N., Iwasaki H., Ueki T., Sakurai I. Polyhedral assembly of a membrane protein in its three-dimensional crystal. J. Mol. Biol. 236:1994;990-994
19. Kühlbrandt W. Three-dimensional crystals of the light-harvesting chlorophyll a/b protein complex from pea chloroplasts. J. Mol. Biol. 194:1987;757-762
20. Kushwaha S.C., Kates M., Martin W.G. Characterization and composition of the purple and red membrane from Halobacterium cutirubrum. Can. J. Biochem. 53:1974;284-292
21. Landau E.M., Rosenbusch J.P. Lipidic cubic phases a novel concept for the crystallization of membrane proteins. Proc. Natl Acad. Sci. USA. 93:1996;14532-14535
22. Lipowsky R. The conformation of membranes. Nature. 349:1991;475-481
23. Michel H. Characterization and crystal packing of three-dimensional bacteriorhodopsin crystals. EMBO J. 1:1982;1267-1271
24. Michel H., Oesterhelt D. Three-dimensional crystals of membrane proteins bacteriorhodopsin. Proc. Natl Acad. Sci. USA. 77:1980;1283-1285
25. Murakami S., Yamada N., Nagano M., Osumi M. Three-dimensional structure of the prolamellar body in squash etioplasts. Protoplasma. 128:1985;147-156
26. Oesterhelt D., Stoeckenius W. Isolation of the cell membrane of Halobacterium Halobium and its fracmentation into red and purple membrane. Methods Enzymol. 31:1974;667-678
27. Pauptit R.A., Schirmer T., Jansonius J.N., Rosenbusch J.P., Pakker M.W., Tucker A.D., Tsernoglou D., Weiss M.S., Schulz G.E. A common channel-forming motif in evolutionarily distant porins. J. Struct. Biol. 107:1991;136-145
28. Pearse B.M.F., Crowther R.A. Structure and assembly of coated vesicles. Annu. Rev. Biophys. Chem. 16:1987;49-68
29. Pebay-Peyroula E., Rummel G., Rosenbusch J.P., Landau E.M. X-ray structure of bacteriorhodopsin at 2.5 angstroms from microcrystals grown in lipidic cubic phases. Science. 277:1997;1676-1680
30. Saibil H.R. An ordered membrane-cytoskeleton network in squid photoreceptor microvilli. J. Mol. Biol. 158:1982;435-456
31. Schertler G.F.X., Bartunik H.D., Michel H., Oesterhelt D. Orthorhombic crystal form of bacteriorhodopsin nucleated on benzamidine diffracting to 3.6 Å resolution. J. Mol. Biol. 234:1993;156-164
32. Simons K., Ikonen E. Functional rafts in cell membranes. Nature. 387:1997;569-572
33. Sternberg B., L'Hostis C., Whiteway C.A., Watts A. The essential role of specific Halobacterium halobium polar lipids in 2D-array formation of bacteriorhodopsin. Biochim. Biophys. Acta. 1108:1992;21-30
34. Stoeckenius W., Lozier R., Bogomolni R.A. Bacteriorhodopsin and the purple membrrane of halobacteria. Biochim. Biophys. Acta. 505:1979;215-278
35. Stryer L. The interaction of a naphthalene dye with apomyoglobin and apohemoglobin a fluorescent probe of non-polar binding sites. J. Mol. Biol. 13:1965;482-495
36. Takeda K., Sato H., Tani K., Nakasako M., Kamiya N., Okada T., Kouyama T. X-ray crystallographic studies of bacteriorhodopsin. KEK Proceedings. 97:(14):1997;545-555
37. Unwin P.N.T., Henderson R. Molecular structure determination by electron microscopy of unstained crystalline specimens. J. Mol. Biol. 94:1975;425-440
38. Vinson P.K., Talmon Y., Walter A. Vesicle-micelle transition of phosphatidylcholine and octyl glucoside elucidated by cryo-transmission electron microscopy. Biophys. J. 56:1989;669-681
39. Walter A., Vinson P.K., Kaplun A., Talmon Y. Intermediate structures in the cholate-phosphatidylcholine vesicle-micell transition. Biophys. J. 60:1991;1315-1325