Electron cryomicroscopy of bacteriorhodopsin vesicles: Mechanism of vesicle formation

Biophysical Journal

Volumn 74, Issue 3, 1998, Pages 1409-1420

  Denkov, Nikolai D ^a,d   Yoshimura, Hideyuki ^a,e   Kouyama, Tsutomu ^b   Walz, Jochen ^c   Nagayama, Kuniaki ^a,f  

^a JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^b NAGOYA UNIVERSITY   (Japan)

^c MAX PLANCK INSTITUTE OF BIOCHEMISTRY   (Germany)

^d UNIVERSITY OF SOFIA   (Bulgaria)

^e MEIJI UNIVERSITY   (Japan)

^f NATIONAL INSTITUTE FOR PHYSIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIORHODOPSIN; HALOLIPID; OCTYLTHIOGLUCOSIDE; UNCLASSIFIED DRUG;

ARTICLE; BINDING AFFINITY; CRYOELECTRON MICROSCOPY; ELASTICITY; ELECTRON MICROSCOPY; HALOBACTERIUM SALINARUM; IMAGE ANALYSIS; MEMBRANE VESICLE; NONHUMAN;

EID: 0031932860     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77853-1     Document Type: Article

References (51)

1. Alberts, B., D. Bray, J. Lewis, M. Raff, K. Roberts, and J. D. Watson. 1994. Molecular Biology of the Cell, 3rd ed. Garland Publishing, New York.
2. Birge, R. R. 1994. Bacteriorhodopsin: a nonlinear proton pump. Nature. 371:659-660.
3. Branden, C., and J. Tooze. 1991. Introduction to Protein Structure. The structure of spherical viruses, pp. 161-177. Garland Publishing, New York.
4. Caspar, D. L. D., and A. Klug. 1962. Physical principles in the construction of regular viruses. Cold Spring Harb. Symp. Quant. Biol. 27:1-24.
5. Darnell, J. E., H. Lodish, and D. Baltimore. 1990. Molecular Cell Biology, 2nd ed. Scientific American Books, New York.
6. Denkov, N. D., H. Yoshimura, and K. Nagayama. 1996a. Method for controlled formation of vitrified films for cryo-electron microscopy. Ultramicroscopy. 65:147-158.
7. Denkov, N. D., H. Yoshimura, K. Nagayama, and T. Kouyama, 1996b. Nanoparticle arrays in freely suspended vitrified films. Phys. Rev. Lett. 76:2354-2357.
8. Dubochet, J., M. Adrian, J.-J. Chang, J.-C. Homo, J. Lepault, A. W. McDowall, and P. Schultz. 1988. Cryo-electron microscopy of vitrified specimens. Q. Rev. Biophys. 21:129-228.
9. Ebrey, T. 1993. Light energy transduction in bacteriorhodopsin. In Thermodynamics of Membrane Receptors and Channels. M. B. Jackson, editor. CRC Press, Boca Raton, FL. 353-387.
10. Evans, E., and W. Rawicz. 1990. Entropy-driven tension and bending elasticity in condensed-fluid membranes. Phys. Rev. Lett. 64: 2094-2097.
11. Fukuda, K., A. Ikegami, A. Nasuda-Kouyama, and T. Kouyama. 1990. Effect of partial delipidation of purple membrane on the photodynamics of bacteriorhodopsin. Biochemistry. 29:1997-2002.
12. Grigorieff, N., T. A. Ceska, K. H. Downing, J. M. Baldwin, and R. Henderson. 1996. Electron-crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259:393-421.
13. Harrison, S. C. 1984. Multiple modes of subunit association in the structures of simple spherical viruses. Trends Biochem. Sci. 9:345-351.
14. Helfrich, W. 1973. Elastic properties of lipid bilayers: theory and possible experiments. Z. Naturforsch. C. 28:693-703.
15. Henderson, R. 1975. The structure of the purple membrane from Halobacterium halobium: analysis of the x-ray diffraction pattern. J. Mol. Biol. 93:123-138.
16. Henderson, R., J. M. Baldwin, T. A. Ceska, F. Zemlin, E. Beckmann, and K. H. Downing. 1990. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213: 899-929.
17. Henderson, R., J. S. Jubb, and S. Whytock. 1978. Specific labelling of the protein and lipid on the extracellular surface of purple membrane. J. Mol. Biol. 123:259-274.
18. Henderson, R., and D. Shotton. 1980. Crystallization of purple membrane in three dimensions. J. Mol. Biol. 139:99-109.
19. Henderson, R., and P. N. T. Unwin. 1975. Three-dimensional model of purple membrane obtained by electron microscopy. Nature. 257:28-32.
20. Horne, R. W. 1979. The formation of virus crystalline and paracrystalline arrays for electron microscopy and image analysis. Adv. Virus Res. 24:173-221.
21. Horne, R. W., and I. Pasquali-Ronchetti. 1974. A negative staining carbon film technique for studying viruses in the electron microscope. I. Preparation procedures for examining icosahedral and filamentous viruses. J. Ultrastruct. Res. 47:361-383.
22. Israelachvili, J. N. 1977. Refinement of the fluid-mosaic model of membrane structure. Biochim. Biophys. Acta. 469:221-225.
23. Israelachvili, J. N. 1992. Intermolecular and Surface Forces, 2nd ed. Academic Press, New York.
24. Israelachvili, J. N., S. Marcelja, and R. G. Horn. 1980. Physical principles of membrane organization. Q. Rev. Biophys. 13:121-200.
25. Kates, M., S. C. Kushwaha, and G. D. Sprott. 1982. Lipids of purple membrane from extreme halophiles and of methanogenic bacteria. Methods Enzymol. 88:98-111.
26. Kates, M., N. Moldoveanu, and L. C. Stewart. 1993. On the revised structure of the major phospholipid of Halobacterium salinarium. Biochim. Biophys. Acta. 1169:46-53.
27. Kelly, R. B. 1993. Storage and release of neurotransmitters. Cell Neuron. 72:43-53.
28. Khorana, H. G. 1988. Bacteriorhodopsin, a membrane protein that uses light to translocate protons. J. Biol. Chem. 263:7439-7442.
29. Kimura, Y., D. G. Vassylyev, A. Miyazawa, A. Kidera, M. Matsushima, K. Mitsuoka, K. Murata, T. Hirai, and Y. Fudjiyoshi. 1997. Surface of bacteriorhodopsin revealed by high-resolution electron crystallography. Nature. 389:206-211.
30. Klug, A., and D. L. D. Caspar. 1960. The structure of small viruses. Adv. Virus Res. 7:225-325.
31. Kouyama, T., M. Yamamoto, N. Kamiya, H. Iwasaki, T. Ueki, and I. Sakurai. 1994. Polyhedral assembly of a membrane protein in its three-dimensional crystal. J. Mol. Biol. 236:990-994.
32. Kralchevsky, P. A., J. C. Eriksson, and S. Ljunggren. 1994. Theory of curved interfaces and membranes: mechanical and thermodynamical approaches. Adv. Colloid Interface Sci. 48:19-59.
33. Kreis, T. E. 1992. Regulation of vesicular and tubular membrane traffic of the Golgi complex by coat proteins. Curr. Opin. Cell Biol. 4:609-615.
34. Kühlbrandt, W. 1988. Three-dimensional crystallisation of membrane proteins. Q. Rev. Biophys. 21:429-477.
35. 60 capsid at 3.3 Å resolution. J. Mol. Biol. 203:1045-1070.
36. Michel, H. 1982. Characterization and crystal packing of three-dimensional bacteriorhodopsin crystals. EMBO J. 1:1267-1271.
37. Michel, H., and D. Oesterhelt. 1980. Three-dimensional crystals of membrane proteins: bacteriorhodopsin. Proc. Natl. Acad. Sci. USA. 77: 1283-1285.
38. Mitchell, D. J., and B. W. Ninham. 1981. Micelles, vesicles and microemulsions. J. Chem. Soc. Faraday Trans. 277:601-629.
39. Oesterhelt, D., and W. Stoeckenius. 1973. Functions of a new photoreceptor membrane. Proc. Natl. Acad. Sci. USA. 70:2852-2857.
40. Oesterhelt, D., and W. Stoeckenius. 1974. Isolation of the cell membrane of Halobacterium halobium and its fragmentation into red and purple membrane. Methods Enzymol. 31:667-678.
41. Orci, L., D. J. Palmer, M. Amherdt, and J. A. Rothman. 1993. Coated vesicle assembly in the Golgi requires only coatomer and ARF proteins from the cytosol. Nature. 364:732-734.
42. Pearse, B. M. F., and R. A. Crowther. 1987. Structure and assembly of coated vesicles. Annu. Rev. Biophys. Biophys. Chem. 16:49-68.
43. Rehorek, M., and M. P. Heyn. 1979. Binding of all-trans-retinal to the purple membrane: evidence for cooperativity and determination of the extinction coefficient. Biochemistry. 18:4977-4983.
44. Sakata, K., Y. Kimura, and Y. Fujiyoshi. 1992. Methods for orienting purple membrane in vitreous ice. Bull. Inst. Chem. Res. Kyoto Univ. 70:257-269.
45. Scheludko, A. 1967. Thin liquid films. Adv. Colloid Interface Sci. 1:392-470.
46. Schertler, G. F. X., H. D. Bartunik, H. Michel, and D. Oesterhelt. 1993. Orthorombic crystal form of bacteriorhodopsin nucleated on benzamidine diffracting to 3.6 Å resolution. J. Mol. Biol. 234:156-164.
47. Takeda, S., H. Yoshimura, S. Endo, T. Takahashi, and K. Nagayama. 1995. Control of crystal forms of apoferritin by site-directed mutagenesis. Proteins Struct. Funct. Genet. 23:548-556.
48. Tributsch, H., and R. A. Bogomolni. 1994. Bacteriorhodopsin: a molecular photooscillator? Chem. Phys. Lett. 227:74-78.
49. Tsujimoto, K., S. Yorimitsu, T. Takahashi, and M. Ohashi. 1989. Revised structure of a phospholipid obtained from Halobacterium halobium. J. Chem. Soc. Chem. Commun. 1:668-670.
50. Unwin, P. N. T., and R. Henderson. 1975. Molecular structure determination by electron microscopy of unstained crystalline specimens. J. Mol. Biol. 94:425-440.
51. Zingsheim, H. P., D.-Ch. Neugebauer, and R. Henderson. 1978. Properties of the two sides of the purple membrane correlated. J. Mol. Biol. 123:275-278.