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Data not shown for Sox17α.
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In this study, a cDNA expression library was constructed from stage 9 to 10.25 vegetal pole explants. Poly(A)-enriched RNA was converted to cDNA by the Gibco BRL plasmid cDNA synthesis system. Double-stranded cDNA was then directionally ligated to a modified form of pCS2, which we refer to as pCS300. Briefly, pCS300 differs from pCS2 in that the polylinker II Not I site was moved to the polylinker I area and an Asc I and Pme I site were added to the polylinker II area. This vector is similar in design to pCS100 [J. C. Baker and R. M. Harland (1996)]. Library transformants were divided into pools of 500 clones each by manually scraping LB/ampicillin plates. In vitro transcribed mRNA was then synthesized from Asc I-linearized templates with the Ambion Megascript system. Positive pools were split into 60 pools of 10 clones each and then into 15 pools of 1 clone each. The unamplified expression library contained 530,000 independent clones (7).
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48
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note
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2, 2.5 mM Hepes (pH 7.4)] at 16° to 23°C.
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49
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0028485767
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RT-PCR was performed as described in (4). Primer sets are either described below or referenced (sequences are 5′ to 3′). All explants, including those used in library construction, were harvested by the Trisolv method. NCAM, GLOBIN, XTWIST, MUSCLE ACTIN, IFABP (4); Xlhbox-8 (9); XBRA [P. A. Wilson and D. A. Melton, Curr. Biol. 4, 676 (1994)]; EDD. ODC (25); LFABP, up-ACCGAGATTGAACAGAATGG; down-CCTCCATGTTTACCACGGAC; MIX. 1, up-CCCAGGCATCATCCAATGTC; down-TGACACGGCTCTTGGTTGGC; MIX-ER. up-CACCAGCCCAGCACTTAACC; down-CAATGTCACATCAACTGAAG; Sox17α, Sox17β (8).
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4, 3.7% formaldehyde], cleared in xylene, and mounted in paraffin. All sections are 10 μm thick. For Mixer and Mix. 1 in situ hybridization, probes were constructed from sequences 3′ to the homeobox. The Edd and Xbra in situ probes have been described in [(9); J. C. Smith et al., Cell 71, 731 (1991)]. βgal activity was measured according to standard protocols.
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note
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Supported in part by grants from the National Institutes of Health and the Howard Hughes Medical Institute (HHMI). C.L.H. was supported by a predoctoral grant from the National Science Foundation and DAM. is an investigator of the HHMI. We acknowledge the help of R. Harland for advice on expression libraries, K. Symes for histological advice, R. Nicholls and S. Newfield for sequence alignment advice, P. Rahaim and J. Rush of the HHMI Biopolymers facility for both DNA synthesis and sequencing, E. Wu for computing advice, P. Mead for communicating data before publication, H. Woodland and D. Clements for providing Sox17 clones, and all members of the Melton lab for helpful discussions - in particular L. Chen, Z. Balsara, S. Kim, M. Hebrok, O. Kelley, E. Wu, K. O'Donnel, C-J. Lai, J. Wells, P. Klein, D. Kessler, and C. Dohrman.
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