A model for parallel triple helix formation by ree a: Single-strand association with a homologous duple via the minor groove

Journal of Biomolecular Structure and Dynamics

Volumn 16, Issue 3, 1998, Pages 535-546

  Bertucat, Guillaume ^a   Lavery, Richard ^a   Prèvost, Chantal ^a  

^a INST DE BIOLOGIE PHYSICO CHIMIQUE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA;

ARTICLE; DATA ANALYSIS; ELECTRON MICROSCOPY; HYDROLYSIS; PRIORITY JOURNAL; PROTEIN ANALYSIS; SINGLE STRAND CONFORMATION POLYMORPHISM;

COMPUTER SIMULATION; KINETICS; MODELS, MOLECULAR; MODELS, STATISTICAL; MOLECULAR CONFORMATION; REC A RECOMBINASES;

EID: 0032468201     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1998.10508268     Document Type: Article

References (64)

1. Camerini-Otero, R. D., and Hsieh, P., 1993. Cell, 73:217–223.
2. Kowalczykowski, S. C., and Eggleston, A. K., 1994. Annu. Rev. Biochem., 63:991–1043.
3. Rao, B. J., Chiu, S. K., Bazemore, L. R., Reddy, G., and Radding, C. M., 1995. Trends Biochem. Sci., 20:109–113.
4. Kurumizaka, H., and Shibata, T., J. Biochem., 119216–223. (1996)
5. Takahashi, M., and Nordén, B., 1994. Adv. Biophys., 30:1–35.
6. Dunn, K., Chrysogelos, S., and Griffith, J., 1982. Cell, 28:757–765.
7. Stasiak, A., and Di Capua, E., Nature, 299185–186. (1982)
8. Flory, J., Tsang, S. S., and Muniyappa, K., 1984. Proc. Natl. Acad. Sci. USA, 81:7026–7030.
9. Rosselli, W., and Stasiak, A., 1990. J. Mol. Biol., 216:335–352.
10. Mazin, A. V., and Kowalczykowski, S. C., 1998. EMBO J., 17:1161–1168.
11. Jain, S. K., Cox, M. M., and Inman, R. B., 1994. J. Biol. Chem., 269:20653–20661.
12. Bedale, W. A., and Cox, M., 1996. J. Biol. Chem., 271:5725–5732.
13. Yu, X., and Egelman, E. H., 1992. J. Mol. Biol. 227 334–346.
14. DiCapua, E., Schnarr, M., Ruigrok, R. W., Lindner, P., and Timmins, P. A., 1990. J. Mol. Biol., 214:557–570.
15. Ellouze, C., Takahashi, M., Wittung, P., Mortensen, K., Schnarr, M., and Norden, B., 1995. Eur. J. Biochem., 233:579–583.
16. Nordén, B., Elvingson, C., Kubista, M., Sjoberg, B., Ryberg, H., Mortensen, K., and Takahashi, M., 1992. J. Mol. Biol., 226:1175–1191.
17. Adzuma, K., 1992. Genes Dev., 6:1679–1694.
18. Tuite, E., Kim, S. K., Nordén, B., and Takahashi, M., 1995. Biochemistry, 34:16365–16374.
19. Schumacher, A. A., Choi, K. Y., Zalkin, H., and Brennan, R. G., 1994. Science, 266:763–770.
20. Nishinaka, T., Ito, Y., Yokoyama, S., and Shibata, T., 1997. Proc. Natl. Acad. Sci. USA, 94:6623–6628.
21. Mazin, A. V., and Kowalczykowski, S. C., 1996. Proc. Natl. Acad. Sci. USA, 93:10673–10678.
22. Brenner, S. L., Mitchell, R. S., Morrical, S. W., and Neuendorf, S. K., 1987. J. Biol. Chem., 262:4011–4016.
23. Watt, V. M., Ingles, C. J., Urdea, M. S., and Rutter, W. J., 1985. Proc. Natl. Acad. Sci. USA, 82:4768–4772.
24. Hsieh, P., Camerini-Otero, C. S., and Camerini-Otero, R. D., 1992. Proc. Natl. Acad. Sci. USA, 89:6492–6496.
25. Pugh, B. F., Schutte, B. C., and Cox, M. M., 1989. J. Mol. Biol., 205:487–492.
26. Bortner, C., and Griffith, J., 1990. J. Mol. Biol., 215:623–634.
27. Kiinasta, K., and Stasiak, A., 1997. Proc. Natl. Acad. Sci. USA, 94:7837–7840.
28. Rao, B. J., and Radding, C. M., 1993. Proc. Natl. Acad. Sci. USA, 90:6646–6650.
29. Dagneaux, C., Porumb, H., Liquier, J., Takahashi, M., and Taillandier, E., 1995. J. Biomol. Struct. Dyn., 13:465–470.
30. Muller, B., Burdett, I., and West, S. C., 1992. EMBO J., 11:2685–2693.
31. Reddy, G., Burnett, B., and Radding, C. M., 1995. Biochemistry, 34:10194–10204.
32. Howard-Flanders, P., West, S. C., and Stasiak, A., 1984. Nature, 309:215–219.
33. Stasiak, A. Z., Rosselli, W., and Stasiak, K. A., 1991. Biochimie, 73:199–208.
34. Bazemore, L. R., Takahashi, M., and Radding, C. M., 1997. J. Biol. Chem., 272:14672–14682.
35. Hsieh, P., Camerini-Otero, C. S., and Camerini-Otero, R. D., 1990. Genes Develop., 4:1951–1963.
36. Chiu, S. K., Rao, B. J., Story, R. M., and Radding, C. M., 1993. Biochemistry, 32:13146–13155.
37. Zhurkin, V. B., Raghunathan, G., Ulyanov, N. B., Camerini-Otero, R. D., and Jernigan, R. L., 1994. J. Mol. Biol., 239:181–200.
38. Kumar, K. A., and Muniyappa, K., 1992. J. Biol. Chem., 267:24824–24832.
39. Tuite, E., Sehlstedt, U., Hagmar, P., Norden, B., and Takahashi, M., 1997. Eur. J. Biochem., 243:482492
40. Baliga, R., Singleton, J. W., and Dervan, P. B., 1995. Proc. Natl. Acad. Sci. USA, 92:10393–10397.
41. Cluzel, P., Lebrun, A., Heller, C., Lavery, R., Viovy, J.-L., Chatenay, D., and Caron, F., 1996. Science, 271:792–794.
42. Lebrun, A., and Lavery, R., 1996. J. Biomol. Struct. Dynam., 13:459–464.
43. Lebrun, A., and Lavery, R., 1996. Nucleic Acids Res., 24:2260–2267.
44. Lavery, R., 1988. in ‘Structure and Expression Vol 3. DNA Bending and Curvature’ Edited by:Olson, W. K., Sarma, R. H., Sarma, M. H., and Sundaralingam, M., 91–211. Adenine Press. pl
45. Lavery, R., Sklenar, H., Zakrzewska, K., and Pullman, B., 1986. J. Biomol. Struct. Dynam., 3:989–1014.
46. Lavery, R., Zakrzewska, K., and Sklenar, H., 1995. Comp. Phys. Comm., 91:135–158.
47. Lavery, R., 1995. “Non-Linear Excitation in Biomolecules” Edited by:Springer, Peyrard. 57–82. Editions de Physique.
48. Prévost, C., Boudvillain, M., Beudaert, P., Leng, M., Lavery, R., and Vovelle, F., 1997. J. Biomol. Struct. Dynam., 14 (6):703–714.
49. Bemet, J., Zakrzewska, K., and Lavery, R., 1997. J. Mol. Struct. Theochem, 398:473–482.
50. Hartmann, B., and Lavery, R., 1996. Quart. Rev. Biophys., 29:309–368.
51. Hingerty, B. E., Richtie, R. H., Ferrell, T. L., and Turner, J. E., 1985. Biopolymers, 24:427
52. Fritsch, V., and Westhof, E., 1991. J. Am. Chem. Soc., 113:8271
53. Fritsch, V., and Westhof, E., 1991. J. Comp. Chem., 12:147
54. Jayaram, B., Swaminathan, S., Beveridge, D. L., Sharp, K., and Honig, B., 1990. Macromolecules, 23:3156
55. Gilson, M. K., Sharp, K. A., and Honig, B., 1987. J. Comput. Chem., 9:327
56. Lavery, R., and Sklenar, H., 1988. J. Biomol. Struct. Dynam., 6:63–91.
57. Lavery, R., and Sklenar, H., 1989. J. Biomol. Struct. Dynam., 6:655–667.
58. Jain, S. K., Inman, R. B., and Cox, M. M., 1992. J. Biol. Chem., 267:4215–4222.
59. Auffinger, P., and Westhof, E., 1997. J. Mol. Biol., 274:54–63.
60. Cate, J. H., Gooding, A. R., Podell, E., Zhou, K., Golden, B. L., Szewczak, A. A., Kundrot, C. E., Cech, T. R., and Doudna, J. A., 1996. Science, 273:1696–1699.
61. Kuryavyi, V. V., and Jovin, T. M., 1995. Nat. Genet., 9:339–341.
62. Kettani, A., Bouaziz, S., Wang, W., Jones, R. A., and Patel, D. J., 1997. Nat. Struct. Biol., 4:382–388.
63. Lebrun, A., Shakked, Z., and Lavery, R., 1997. Proc. Natl. Acad. Sci. USA, 94:2993–2998.
64. Lebrun, A., and Lavery, R., 1998. Biopolymers in press