Structural and dynamical characterization of a biologically active unfolded fibonectin-binding protein from Staphylococcus aureus

Biochemistry

Volumn 37, Issue 48, 1998, Pages 17054-17067

  Penkett, Christopher J ^a   Redfield, Christina ^a   Jones, Jonathan A ^a   Dodd, Ian ^b   Hubbard, Julia ^c   Smith, Richard A G ^a,b   Smith, Lorna J ^a   Dobson, Christopher M ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

^b AdProTech plc   (United Kingdom)

^c GLAXOSMITHKLINE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BINDING PROTEIN; FIBRONECTIN;

ARTICLE; CONFORMATIONAL TRANSITION; HYDROPHOBICITY; MOLECULAR DYNAMICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN FOLDING; STAPHYLOCOCCUS AUREUS;

ADHESINS, BACTERIAL; AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CARRIER PROTEINS; MODELS, CHEMICAL; MOLECULAR SEQUENCE DATA; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PEPTIDE FRAGMENTS; PROTEIN CONFORMATION; PROTEIN DENATURATION; REPETITIVE SEQUENCES, AMINO ACID; STAPHYLOCOCCUS AUREUS;

BACTERIA (MICROORGANISMS); STAPHYLOCOCCUS AUREUS;

EID: 0032374091     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi9814080     Document Type: Article

References (102)

1. Hay, E. D. (1991) in Cell Biology of the Extracellular Matrix (Hay, E. D., Ed.) Plenum Press, New York.
2. Patti, J. M., Allen, B. L., McGavin, M. J., and Höök, M. (1994) Annu. Rev. Microbiol. 48, 585-617.
3. Potts, J. R., and Campbell, I. D. (1994) Curr. Opin. Cell Biol. 6, 648-655.
4. Kuusela, P. (1978) Nature 276, 718-720.
5. Signäs, C., Raucci, G., Jönnson, K., Lindgren, P.-E., Anantharamaiah, G. M., Höök, M., and Lindberg, M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 699-703.
6. Jönsson, K., Signäs, C., Müller, H.-P., and Lindberg, M. (1991) Eur. J. Biochem. 202, 1041-1048.
7. Burnham, M. K., Chopra, I., Critchley, I. A., and Knowles, D. J. C. (1994) Patent, International Publication No. W0 94/ 18327.
8. Kline, J. B., Xu, S., Bisno, A. L., and Collins, C. M. (1996) Infect. Immun. 64, 2122-2129.
9. Schneewind, O., Mihaylova-Petkov, D., and Model, P. (1993) EMBO J. 12, 4803-4811.
10. House-Pompeo, K., Xu, Y., Joh, D., Speziale, P., and Höök, M. (1996) J. Biol. Chem. 271, 1379-1384.
11. Speziale, P., Joh, D., Visai, L., Bozzini, S., House-Pompeo, K., Lindberg, M., and Höök, M. (1996) J. Biol. Chem. 271, 1371-1378.
12. Penkett, C. J., Redfield, C., Dodd, I., Hubbard, J., McBay, D. L., Mossakowska, D. E., Smith, R. A. G., Dobson, C. M., and Smith, L. J. (1997) J. Mol. Biol. 274, 152-159.
13. Lawlor, E. J., Elson, S. W., Holland, S., Cassels, R., Hodgson, J. E., Lloyd, M. D., Baldwin, J. E., and Schofield, C. J. (1994) Tetrahedron 50, 8737-8748.
14. Tabor, S. (1990) in Current Protocols in Molecular Biology (Ausubel, F. A., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., Eds.) Greene Publishing and Wiley-Interscience, New York.
15. Miekka, S. I., Ingram, K. C., and Menache, D. (1982) Thromb. Res. 27, 1-14.
16. Bodenhausen, G., and Ruben, D. J. (1980) Chem. Phys. Lett. 69, 185-189.
17. Kay, L. E., Marion, D., and Bax, A. (1989) J. Magn. Reson. 84, 72-84.
18. Marion, D., Driscoll, P. C., Kay, L. E., Wingfield, P. T., Bax, A., Gronenborn, A. M., and Clore, G. M. (1989) Biochemistry 28, 6150-6156.
19. Marion, D., Kay, L. E., Sparks, S. W., Torchia, D. A., and Bax, A. (1989) J. Am. Chem. Soc. 111, 1515-1517.
20. Driscoll, P. C., Clore, G. M., Marion, D., Wingfield, P. T., and Gronenborn, A. M. (1990) Biochemistry 29, 3542-3556.
21. Frenkiel, T., Bauer, C., Carr, M. D., Birdsall, B., and Feeney, J. (1990) J. Magn. Reson. 90, 420-425.
22. Ikura, M., Bax, A., Clore, G. M., and Gronenborn, A. M. (1990) J. Am. Chem. Soc. 112, 9020-9022.
23. Kay, L. E., Keifer, P., and Saarinen, T. (1992) J. Am. Chem. Soc. 114, 10663-10665.
24. Stejskal, E. O., and Tanner, J. E. (1965) J. Chem. Phys. 42, 288-292.
25. Gibbs, S. J., and Johnson C. S. (1991) J. Magn. Reson. 93, 395-402.
26. Jones, J. A., Wilkins, D. K., Smith, L. J., and Dobson, C. M. (1997) J. Biomol. NMR 10, 199-203.
27. Kay, L. E., Brooks, B., Sparks, S. W., Torchia, D. A., and Bax, A. (1989) J. Am. Chem. Soc. 111, 5488-5490.
28. Kay, L. E., and Bax, A. (1990) J. Magn. Reson. 86, 110-126.
29. Redfield, C., Smith, L. J., Boyd, J., Lawrence, G. M. P., Edwards, R. G., Smith, R. A. G., and Dobson, C. M. (1991) Biochemistry 30, 11029-11035.
30. Kay, L. E., Torchia, D. A., and Bax, A. (1989) Biochemistry 28, 8972-8979.
31. Boyd, J., Hommel, U., and Campbell, I. D. (1990) Chem. Phys. Lett. 175, 477-482.
32. Palmer, A. G., Skelton, N. J., Chazin, W. J., Wright, P. E., and Rance, M. (1992) Mol. Phys. 75, 699-711.
33. Schwalbe, H., Fiebig, K., Buck, M., Jones, J. A., Grimshaw, S. B., Spencer, A., Glaser, S. J., Smith, L. J., and Dobson, C. M. (1997) Biochemistry 36, 8977-8991.
34. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W., and Bax, A. (1992) Biochemistry 31, 5269-5278.
35. Palmer, A. G., Rance, M., and Wright, P. E. (1991) J. Am. Chem. Soc. 113, 4371-4380.
36. Barkhuijsen, H., de Beer, R., and van Ormondt, D. (1986) J. Magn. Reson. 67, 371-375.
37. Swindells, M. B., MacArthur, M. W., and Thornton, J. M. (1995) Nat. Struct. Biol. 2, 596-603.
38. Smith, L. J., Bolin, K. A., Schwalbe, H., MacArthur, M. W., Thornton, J. M., and Dobson, C. M. (1996) J. Mol. Biol. 255, 494-506.
39. Pardi, A., Billeter, M., and Wüthrich, K. (1984) J. Mol. Biol. 180, 741-751.
40. Fiebig, K. M., Schwalbe, H., Buck, M., Smith, L. J., and Dobson, C. M. (1996) J. Phys. Chem. 100, 2661-2666.
41. Chou, P. Y., and Fasman, G. D. (1974) Biochemistry 13, 222-245.
42. Garnier, J., Osguthorpe, D. J., and Robson, B. (1978) J. Mol. Biol. 120, 97-120.
43. Rost, B., and Sander, C. (1993) J. Mol. Biol. 232, 584-599.
44. Rost, B., and Sander, C. (1994) Proteins 19, 55-72.
45. Braun, D., Wider, G., and Wüthrich, K. (1994) J. Am. Chem. Soc. 116, 8466-8469.
46. Alexandrescu, A. T., Abeygunawardana, C., and Shortle, D. (1994) Biochemistry 33, 1063-1072.
47. Dobson, C. M. (1992) Curr. Opin. Struct. Biol. 2, 6-12.
48. Shortle, D. R. (1996) Curr. Opin. Struct. Biol. 6, 24-30.
49. Merutka, G., Dyson, H. J., and Wright, P. E. (1995) J. Biomol. NMR 5, 14-24.
50. Plaxco, K. W., Morton, C. J., Grimshaw, S. B., Jones, J. A., Pitkeathly, M., Campbell, I. D., and Dobson, C. M. (1997) J. Biomol. NMR 10, 221-230.
51. Serrano, L. (1995) J. Mol. Biol. 254, 322-333.
52. Smith, L. J., Fiebig, K. M., Schwalbe, H., and Dobson, C. M. (1996) Folding Des. 1, R95-R106.
53. Zhang, O., and Forman-Kay, J. D. (1997) Biochemistry 36, 3959-3970.
54. Schimmel, P. R., and Flory, P. J. (1968) J. Mol. Biol. 34, 105-120.
55. Hurley, J. H., Mason, D. A., and Matthews, B. W. (1992) Biopolymers 32, 1443-1446.
56. Sosnick, T. R., and Trewhella, J. (1992) Biochemistry 31, 8329-8335.
57. Dolgikh, D. A., Abaturov, L. V., Bolotina, I. A., Brazhnikov, E. V., Bychkova, V. E., Gilmanshin, R. I., Lebedev, Y. O., Semisotnov, G. V., Tikopulo E. I., and Ptitsyn O. B. (1985) Eur. Biophys. J. 13, 109-121.
58. Chen, L., Hodgson, K. O., and Doniach, S. (1996) J. Mol. Biol. 261, 658-671.
59. Kataoka, M., Hagihara, Y., Mihari, K., and Goto, Y. (1993) J. Mol. Biol. 229, 591-596.
60. Szyperski, T., Luginbühl, P., Otting, G., Güntert, P., and Wüthrich, K. (1993) J. Biomol. NMR 3, 151-164.
61. Carrington, D., and McLachlan, A. D. (1967) Introduction to Magnetic Resonance, Harper and Row, New York.
62. Gast, K., Damaschun, H., Eckert, K., Schulze-Forster, K., Maurer, H. R., Müller-Frohne, M., Zirwer, D., Czarnecki, J., and Damaschun, G. (1995) Biochemistry 34, 13211-13218.
63. Lipari, G., and Szabo, A. (1982) J. Am. Chem. Soc. 10, 4546-4559.
64. Alexandrescu, A. T., and Shortle, D. (1994) J. Mol. Biol. 242, 527-546.
65. Frank, M. K., Clore, G. M., and Gronenborn, A. M. (1995) Protein Sci. 4, 2605-2615.
66. Farrow, N. A., Zhang, O., Forman-Kay, J. D., and Kay, L. E. (1997) Biochemistry 36, 2390-2402.
67. Powers, R., Clore, G. M., Stahl, S. J., Wingfield, P. T., and Gronenborn, A. (1992) Biochemistry 31, 9150-9157.
68. Redfield, C., Boyd, J., Smith, L. J., Smith, R. A. G., and Dobson, C. M. (1992) Biochemistry 31, 10431-10437.
69. Buck, M., Boyd, J., Redfield, C., MacKenzie, D. A., Jeenes, D. J., Archer, D. B., and Dobson, C. M. (1995) Biochemistry 34, 4041-4055.
70. Logan, T. M., Thériault, Y., and Fesik, S. W. (1994) J. Mol. Biol. 236, 637-648.
71. Buck, M., Schwalbe, H., and Dobson, C. M. (1996) J. Mol. Biol. 257, 669-683.
72. Marqusee, S., and Baldwin, R. L. (1987) Proc. Natl. Acad. Sci. U.S.A. 84, 8898-8902.
73. Scholtz, J. M., Qian, H., Robbins, V. H., and Baldwin, R. L. (1993) Biochemistry 32, 9668-9676.
74. Dyson, H. J., Merutka, G., Waltho, J. P., Lerner, R. A., and Wright, P. E. (1992) J. Mol. Biol. 226, 795-817.
75. Kemmink, J., van Mierlo, C. P. M., Scheek, R. M., and Creighton, T. E. (1993) J. Mol. Biol. 230, 312-322.
76. Kemmink, J., and Creighton, T. E. (1995) J. Mol. Biol. 245, 251-260.
77. Arcus, V. L., Vuilleumier, S., Freund, S. M. V., Bycroft, M., and Fersht, A. R. (1995) J. Mol. Biol. 254, 305-321.
78. Pan, H., Barbar, E., Barany, G., and Woodward, C. (1995) Biochemistry 34, 13974-13981.
79. Schulman, B. A., Kim, P. S., Dobson, C. M., and Redfield, C. (1997) Nat. Struct. Biol. 4, 630-634.
80. Worth, G. A., and Wade, R. C. (1995) J. Phys. Chem. 99, 17473-17482.
81. Dyson, H. J., Sayre, J. R., Merutka, G., Shin, H.-C., Lerner, R. A., and Wright, P. E. (1992) J. Mol. Biol. 226, 819-835.
82. Lumb, K. J., and Kim, P. S. (1994) J. Mol. Biol. 236, 412-420.
83. Neri, D., Billeter, M., Wider, G., and Wüthrich, K. (1992) Science 257, 1559-1563.
84. West, N. J., and Smith, L. J. (1998) J. Mol. Biol. 280, 867-977.
85. Bartik, K., and Redfield, C. (1993) J. Biomol. NMR 3, 415-428.
86. McGavin, M. J., Raucci, G., Gurusiddappa, S., and Höök, M. (1991) J. Biol. Chem. 266, 8343-8347.
87. McGavin, M. J., Gurusiddappa, S., Lindgren, P.-E., Lindberg, M., Raucci, G., and Höök, M. (1993) J. Biol. Chem. 268, 23946-23953.
88. Karlin, S. (1995) Curr. Opin. Struct. Biol. 5, 360-371.
89. Schultz, G. E. (1979) in Molecular Mechanisms of Biological Recognition (Balaban, M., Ed.) pp 79-84, Elsevier/North-Holland Biomedical Press, Amsterdam..
90. Searle, M. S., Williams, D. H., and Gerhard, U. (1992) J. Am. Chem. Soc. 114, 10697-10704.
91. Dobson, C. M. (1993) Curr. Biol. 3, 530-532.
92. Spolar, R. S., and Record, M. T. (1994) Science 263, 777-784.
93. Kriwacki, R. W., Hengst, L., Tennant, L., Reed, S. I., and Wright, P. E. (1996) Proc. Natl. Acad. Sci. U.S.A. 93, 11504-11509.
94. Ciborowski, P., Flock, J.-I., and Wadström, T. (1992) J. Med. Microbiol. 37, 376-381.
95. Rozalska, B., Sakata, N., and Wadström, T. (1994) APMIS 102, 112-118.
96. Sun, Q., Smith, G. M., Zahradka, C., and McGavin, M. J. (1997) Infect. Immun. 65, 537-543.
97. Hernández, M. A., Avila, J., and Andreu, J. M. (1986) Eur. J. Biochem. 154, 41-48.
98. Schweers, O., Schönbrunn-Hanebeck, E., Marx, A., and Mandelkow, E. (1994) J. Biol. Chem. 269, 24290-24297.
99. Shen, F., Triezenberg, S. J., Hensley, P., Porter, D., and Knutson, J. R. (1996) J. Biol. Chem. 271, 4819-4826.
100. Shen, F., Triezenberg, S. J., Hensley, P., Porter, D., and Knutson, J. R. (1996) J. Biol. Chem. 271, 4827-4837.
101. Weinreb, P. H., Zhen, W., Poon, A. W., Conway, K. A., and Lansbury, P. T. (1996) Biochemistry 35, 13709-13715.
102. Daughdrill, G. W., Chadsey, M. S., Karlinsey, J. E., Hughes, K. T., and Dahlquist, F. W. (1997) Nat. Struct. Biol. 4, 285-291.