메뉴 건너뛰기




Volumn 1, Issue 5, 1998, Pages 584-588

Sulfolobus genome: From genomics to biology

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA; SULFOLOBUS; SULFOLOBUS SOLFATARICUS;

EID: 0032173616     PISSN: 13695274     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1369-5274(98)80093-3     Document Type: Article
Times cited : (18)

References (40)
  • 2
    • 17144471185 scopus 로고    scopus 로고
    • Completing the sequence of the Sulfolobus solfataricus P2 genome
    • Sensen CW, Charlebois RL, Chow C, Clausen IG, Curtis B, Doolittle WF, Duguet M, Erauso G, Gaasterland T, Garrett RA et al.: Completing the sequence of the Sulfolobus solfataricus P2 genome. Extremophiles 1998, 2:305-312. The latest progress report from the S. solfataricus P2 genome sequencing project. Here, strategies for completing the genome are discussed and initial results on genomic features of Sulfolobus are presented.
    • (1998) Extremophiles , vol.2 , pp. 305-312
    • Sensen, C.W.1    Charlebois, R.L.2    Chow, C.3    Clausen, I.G.4    Curtis, B.5    Doolittle, W.F.6    Duguet, M.7    Erauso, G.8    Gaasterland, T.9    Garrett, R.A.10
  • 3
    • 18144447330 scopus 로고    scopus 로고
    • Genetic elements in the extremely thermophilic archaeon Sulfolobus
    • Zillig W, Arnold HP, Holz I, Prangishvili D, Schweier A, Stedman K, She Q, Phan H. Garrett RA, Kristjansson JK: Genetic elements in the extremely thermophilic archaeon Sulfolobus. Extremophiles 1998, 2:131-140. Provides an up-to-date overview of the characterized extrachromosomal elements of Sulfolobus and the extent to which their nucleotide sequences and gene organization have been determined.
    • (1998) Extremophiles , vol.2 , pp. 131-140
    • Zillig, W.1    Arnold, H.P.2    Holz, I.3    Prangishvili, D.4    Schweier, A.5    Stedman, K.6    She, Q.7    Phan, H.8    Garrett, R.A.9    Kristjansson, J.K.10
  • 4
    • 0032213855 scopus 로고    scopus 로고
    • Genetic profile of pNOB8 from Sulfolobus: The first conjugative plasmid from an archaeon
    • in press
    • She Q, Phan H, Garrett RA, Albers S-V, Stedman K, Zillig W: Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles 1998, 2:in press. Provides a detailed sequence analysis of all the open reading frames of a large (41.229 bp) conjugative plasmid from a Japanese Sulfolobus isolate. Evidence is presented for a ParA/B partition system, centromere-like elements, transposases and for the dissimilarity of the putative conjugative proteins from those of bacteria.
    • (1998) Extremophiles , vol.2
    • She, Q.1    Phan, H.2    Garrett, R.A.3    Albers, S.-V.4    Stedman, K.5    Zillig, W.6
  • 5
    • 0029128732 scopus 로고
    • A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating
    • Schleper C, Holz I, Janekovic D, Murphy J, Zillig W: A multicopy plasmid of the extremely thermophilic archaeon Sulfolobus effects its transfer to recipients by mating. J Bacteriol 1995, 177:4417-4425.
    • (1995) J Bacteriol , vol.177 , pp. 4417-4425
    • Schleper, C.1    Holz, I.2    Janekovic, D.3    Murphy, J.4    Zillig, W.5
  • 6
    • 0025149275 scopus 로고
    • A family of ATPases involved in active partitioning of diverse bacterial plasmids
    • Motallebi-Veshareh M, Rouch DA, Thomas CM: A family of ATPases involved in active partitioning of diverse bacterial plasmids. Mol Microbiol 1990, 4:1455-1463.
    • (1990) Mol Microbiol , vol.4 , pp. 1455-1463
    • Motallebi-Veshareh, M.1    Rouch, D.A.2    Thomas, C.M.3
  • 7
    • 0030015553 scopus 로고    scopus 로고
    • Molecular dissection of a protein SopB essential for Escherichia coli F plasmid partition
    • Hanai R, Liu R, Benedetti P, Caron PR, Lynch AS, Wang JC: Molecular dissection of a protein SopB essential for Escherichia coli F plasmid partition. J Biol Chem 1996, 271:17469-17475.
    • (1996) J Biol Chem , vol.271 , pp. 17469-17475
    • Hanai, R.1    Liu, R.2    Benedetti, P.3    Caron, P.R.4    Lynch, A.S.5    Wang, J.C.6
  • 8
    • 0030901355 scopus 로고    scopus 로고
    • Bacterial chromosome segregation: Is there a mitotic apparatus?
    • Wheeler RT, Shapiro L: Bacterial chromosome segregation: is there a mitotic apparatus? Cell 1997, 88:577-579. The involvement of the partition proteins ParA and ParB, and the molecule motor protein MukB, in bacterial chromosomal segregation is discussed in this minireview and a working model of chromosomal segregation is presented for bacteria.
    • (1997) Cell , vol.88 , pp. 577-579
    • Wheeler, R.T.1    Shapiro, L.2
  • 11
    • 0029831579 scopus 로고    scopus 로고
    • One billion years of Myb
    • Lipsick JS: One billion years of Myb. Oncogene 1996, 13:223-235.
    • (1996) Oncogene , vol.13 , pp. 223-235
    • Lipsick, J.S.1
  • 12
    • 0026696852 scopus 로고
    • High information conservation implies that at least three proteins bind independently to F plasmid incD repeats
    • Herman ND, Schneider TD: High information conservation implies that at least three proteins bind independently to F plasmid incD repeats. J Bacteriol 1992, 174:3558-3560.
    • (1992) J Bacteriol , vol.174 , pp. 3558-3560
    • Herman, N.D.1    Schneider, T.D.2
  • 14
    • 0028886650 scopus 로고
    • A comparison of the DNA binding properties of histone-like proteins derived from representatives of the two kingdoms of the Archaea
    • Ronimus RS, Musgrave DR: A comparison of the DNA binding properties of histone-like proteins derived from representatives of the two kingdoms of the Archaea. FEMS Microbiol Lett 1995, 134:79-84.
    • (1995) FEMS Microbiol Lett , vol.134 , pp. 79-84
    • Ronimus, R.S.1    Musgrave, D.R.2
  • 15
    • 0029166294 scopus 로고
    • Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
    • Mojica FJ, Ferrer C, Juez G, Rodriguez-Valera F: Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. Mol Microbiol 1995, 17:85-93.
    • (1995) Mol Microbiol , vol.17 , pp. 85-93
    • Mojica, F.J.1    Ferrer, C.2    Juez, G.3    Rodriguez-Valera, F.4
  • 16
    • 0031437950 scopus 로고    scopus 로고
    • The case for epigenetic effects on centromere identity and function
    • Karpen GH, Allshire RC: The case for epigenetic effects on centromere identity and function. Trends Genet 1997, 13:489-496.
    • (1997) Trends Genet , vol.13 , pp. 489-496
    • Karpen, G.H.1    Allshire, R.C.2
  • 17
    • 0027182790 scopus 로고
    • An essential yeast protein, CBF5p, binds in vitro to centromeres and microtubules
    • Jiang W, Middleton K, Yoon HJ, Fouquet C, Carbon J: An essential yeast protein, CBF5p, binds in vitro to centromeres and microtubules. Mol Cell Biol 1993, 13:4884-4893.
    • (1993) Mol Cell Biol , vol.13 , pp. 4884-4893
    • Jiang, W.1    Middleton, K.2    Yoon, H.J.3    Fouquet, C.4    Carbon, J.5
  • 18
    • 0030820066 scopus 로고    scopus 로고
    • The yeast nucleolar protein Cbf5p is involved in rRNA biosynthesis and interacts genetically with the RNA polymerase I transcription factor RRN3
    • Cadwell C, Yoon HJ, Zebarjadian Y, Carbon J: The yeast nucleolar protein Cbf5p is involved in rRNA biosynthesis and interacts genetically with the RNA polymerase I transcription factor RRN3. Mol Cell Biol 1997, 17:6175-6183.
    • (1997) Mol Cell Biol , vol.17 , pp. 6175-6183
    • Cadwell, C.1    Yoon, H.J.2    Zebarjadian, Y.3    Carbon, J.4
  • 19
    • 0032518692 scopus 로고    scopus 로고
    • The lysine-rich C-terminal repeats of the centromere-binding factor 5 (Cbf5) of Kluyveromyces lactis are not essential for function
    • Winkler AA, Bobok A, Zonneveld BJ, Steensma HY, Hooykaas PJ: The lysine-rich C-terminal repeats of the centromere-binding factor 5 (Cbf5) of Kluyveromyces lactis are not essential for function. Yeast 1998, 14:37-48.
    • (1998) Yeast , vol.14 , pp. 37-48
    • Winkler, A.A.1    Bobok, A.2    Zonneveld, B.J.3    Steensma, H.Y.4    Hooykaas, P.J.5
  • 20
    • 0026069582 scopus 로고
    • The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli
    • Niki H, Jaffe A, Imamura R, Ogura T, Hiraga S: The new gene mukB codes for a 177 kd protein with coiled-coil domains involved in chromosome partitioning of E. coli. EMBO J 1991, 10:183-193.
    • (1991) EMBO J , vol.10 , pp. 183-193
    • Niki, H.1    Jaffe, A.2    Imamura, R.3    Ogura, T.4    Hiraga, S.5
  • 21
    • 0032079493 scopus 로고    scopus 로고
    • Characterization of a prokaryotic SMC protein involved in chromosome partitioning
    • Britton RA, Lin DC, Grossman AD: Characterization of a prokaryotic SMC protein involved in chromosome partitioning. Genes Dev 1998, 12:1254-1259.
    • (1998) Genes Dev , vol.12 , pp. 1254-1259
    • Britton, R.A.1    Lin, D.C.2    Grossman, A.D.3
  • 22
    • 0031804860 scopus 로고    scopus 로고
    • SMC protein complexes and higher-order chromosome dynamics
    • Hirano T: SMC protein complexes and higher-order chromosome dynamics. Curr Opin Cell Biol 1998, 10:317-322.
    • (1998) Curr Opin Cell Biol , vol.10 , pp. 317-322
    • Hirano, T.1
  • 23
    • 0030797561 scopus 로고    scopus 로고
    • A protein related to eucaryal and bacterial DNA-motor proteins in the hyperthermophilic archaeon Sulfolobus acidocaldarius
    • Elie C, Baucher MF, Fondrat C, Forterre P: A protein related to eucaryal and bacterial DNA-motor proteins in the hyperthermophilic archaeon Sulfolobus acidocaldarius. J Mol Evol 1997, 45:107-114. The relationship is discussed between a Sulfolobus gene product carrying mechanochemical structural features that is related to both Smc proteins and to the UvrA superfamily of NTP binding proteins.
    • (1997) J Mol Evol , vol.45 , pp. 107-114
    • Elie, C.1    Baucher, M.F.2    Fondrat, C.3    Forterre, P.4
  • 24
    • 0031909198 scopus 로고    scopus 로고
    • A 71-kDa protein from Halobacterium salinarium belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure
    • Ruepp A, Wanner G, Soppa J: A 71-kDa protein from Halobacterium salinarium belongs to a ubiquitous P-loop ATPase superfamily with head-rod-tail structure. Arch Microbiol 1998, 169:1-9.
    • (1998) Arch Microbiol , vol.169 , pp. 1-9
    • Ruepp, A.1    Wanner, G.2    Soppa, J.3
  • 25
    • 0030856630 scopus 로고    scopus 로고
    • Cell cycle characteristics of thermophilic arehaea
    • Bernander R, Poplawski A: Cell cycle characteristics of thermophilic arehaea. J Bacteriol 1997, 179:4963-4969. Several interesting observations stemmed from this first analysis of an archaeal cell cycle. Firstly, chromosomal replication initiates almost immediately after division and, therefore, few cells have one genome equivalent. Secondly, there is a lag between the termination of replication and the beginning of cell division. Thirdly, morphological changes occur at the onset of stationary phase.
    • (1997) J Bacteriol , vol.179 , pp. 4963-4969
    • Bernander, R.1    Poplawski, A.2
  • 26
    • 0030819736 scopus 로고    scopus 로고
    • Nucleoid structure and distribution in thermophilic Archaea
    • Poplawski A, Bernander R: Nucleoid structure and distribution in thermophilic Archaea. J Bacteriol 1997, 179:7625-7630. Differences in nucleoid structure between exponential-phase cells and stationary-phase cells were observed using phase-contrast and fluorescence microscopy. Observations indicate a much more organized nucleoid in exponential-phase cells. Within exponential cells there is a different organization at different stages of the cell cycle. Importantly, a G2-like phase occurs between the termination of chromosomal replication and the separation of the nucleoids. Most stationary-phase cells contain two nucleoids.
    • (1997) J Bacteriol , vol.179 , pp. 7625-7630
    • Poplawski, A.1    Bernander, R.2
  • 27
    • 0030958709 scopus 로고    scopus 로고
    • Chaperonin filaments: The archaeal cytoskeleton?
    • Trent JD, Kagawa HK, Yaoi T, Olle E, Zaluzec NJ: Chaperonin filaments: the archaeal cytoskeleton? Proc Natl Acad Sci USA 1997, 94:5383-5388. A very interesting and exciting observation that the two chaperonins from Sulfolobus shibatae can form filaments during in vitro studies under physiological conditions. This filament formation required nucleotide binding which hints at a possible cytoskeleton-like function in the cell. Filaments were also seen in vivo by uranyl-acetate staining.
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 5383-5388
    • Trent, J.D.1    Kagawa, H.K.2    Yaoi, T.3    Olle, E.4    Zaluzec, N.J.5
  • 29
    • 0029895213 scopus 로고    scopus 로고
    • Exchange of genetic markers at extremely high temperatures in the archaeon Sulfolobus acidocaldarius
    • Grogan D: Exchange of genetic markers at extremely high temperatures in the archaeon Sulfolobus acidocaldarius. J Bacteriol 1996, 178:3207-3211.
    • (1996) J Bacteriol , vol.178 , pp. 3207-3211
    • Grogan, D.1
  • 30
    • 0024447751 scopus 로고
    • The mechanism of DNA transfer in the mating system of archaebacteria
    • Rosenshine I, Tchelet R, Mevarech M: The mechanism of DNA transfer in the mating system of archaebacteria. Science 1989, 245:1387-1389.
    • (1989) Science , vol.245 , pp. 1387-1389
    • Rosenshine, I.1    Tchelet, R.2    Mevarech, M.3
  • 31
    • 0028330839 scopus 로고
    • Interspecies genetic transfer in halophilic archaebacteria
    • Tchelet R, Mevarech M: Interspecies genetic transfer in halophilic archaebacteria. Syst Appl Microbiol 1994, 16:578-581.
    • (1994) Syst Appl Microbiol , vol.16 , pp. 578-581
    • Tchelet, R.1    Mevarech, M.2
  • 32
  • 36
    • 0030849307 scopus 로고    scopus 로고
    • Recent advances in genetic analyses of hyperthermophilic Archaea and Bacteria
    • Noll KM, Vargas M: Recent advances in genetic analyses of hyperthermophilic Archaea and Bacteria. Arch Microbiol 1997, 168:73-80.
    • (1997) Arch Microbiol , vol.168 , pp. 73-80
    • Noll, K.M.1    Vargas, M.2
  • 37
    • 0031265404 scopus 로고    scopus 로고
    • Shuttle vectors for hyperthermophilic Archaea
    • Aravalli RN, Garrett RA: Shuttle vectors for hyperthermophilic Archaea. Extremophiles 1997, 1:183-191. The first description of a shuttle vector for thermophilic Archaea. This vector is able to be maintained and propagated in Pyrococcus, Sulfolobus and E. coli. Selection is based on benzyl alcohol resistance conferred by the alcohol dehydrogenase gene from S. sofataricus. This vector demonstrates that a gene from a crenarchaeote can be expressed in a euryarchaeote. The development of first-generation vectors such as this will facilitate further development of genetic tools.
    • (1997) Extremophiles , vol.1 , pp. 183-191
    • Aravalli, R.N.1    Garrett, R.A.2
  • 38
    • 0031747102 scopus 로고    scopus 로고
    • An autonomously replicating transforming vector for Sulfolobus solfataricus
    • Cannio R, Contursi P, Rossi M, Bartolucci S: An autonomously replicating transforming vector for Sulfolobus solfataricus. J Bacteriol 1998, 180:3237-3240. The second Sulfolobus shuttle vector to be described. This vector confers hygromycin resistance through a mutant version of the E. coli hygromycin phosphotransferase gene. The mutated protein is both thermostable and functional in Sulfolobus, whereas the native protein is not. This vector can be readily selected for and adapted to the insertion of other mutant genes conferring different resistances.
    • (1998) J Bacteriol , vol.180 , pp. 3237-3240
    • Cannio, R.1    Contursi, P.2    Rossi, M.3    Bartolucci, S.4
  • 39
    • 0026774220 scopus 로고
    • The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: Demonstration of infectivity and of transfection with viral DNA
    • Schleper C, Kubo K, Zillig W: The particle SSV1 from the extremely thermophilic archaeon Sulfolobus is a virus: Demonstration of infectivity and of transfection with viral DNA. Proc Natl Acad Sci USA 1992, 89:7645-7649.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 7645-7649
    • Schleper, C.1    Kubo, K.2    Zillig, W.3
  • 40
    • 0029990021 scopus 로고    scopus 로고
    • Transformation of the extremely thermoacidophilic archaeon Sulfolobus solfataricus via a self-spreading vector
    • Elferink MGL Schleper C, Zillig W: Transformation of the extremely thermoacidophilic archaeon Sulfolobus solfataricus via a self-spreading vector. FEMS Microbiol Lett 1996, 137:31-35.
    • (1996) FEMS Microbiol Lett , vol.137 , pp. 31-35
    • Elferink, M.G.L.1    Schleper, C.2    Zillig, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.