Of coiled bodies, gems, and salmon

Journal of Cellular Biochemistry

Volumn 70, Issue 2, 1998, Pages 181-192

  Matera, A Gregory ^a  

^a CASE WESTERN RESERVE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Coiled bodies (CBs); Gems; P80 coilin; RNA processing; RNPs

Indexed keywords

HISTONE; MESSENGER RNA; MESSENGER RNA PRECURSOR; RIBOSOME RNA; SMALL NUCLEAR RIBONUCLEOPROTEIN; SMALL NUCLEAR RNA;

ALLELE; ANIMAL CELL; BIODIVERSITY; CELL NUCLEUS MATRIX; CELL ORGANELLE; HUMAN; HUMAN CELL; NONHUMAN; PRIORITY JOURNAL; REVIEW; RNA PROCESSING; RNA SPLICING; SALMON; XENOPUS;

ANIMALS; CELL NUCLEOLUS; DNA; HUMANS; MODELS, BIOLOGICAL; NUCLEAR PROTEINS; ORGANELLES; RIBONUCLEOPROTEINS, SMALL NUCLEAR;

ANIMALIA;

EID: 0031804377     PISSN: 07302312     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1097-4644(19980801)70:2<181::AID-JCB4>3.0.CO;2-K     Document Type: Review

References (82)

1. Andrade LEG, Chan EKL, Raska I, Peebles CL, Roos G, Tan EM (1991): Human autoantibody to a novel protein of the nuclear coiled body: Immunological characterization and cDNA cloning of p80 coilin. J Exp Med 173:1407-1419.
2. Andrade LEC, Tan EM, Chan EKL (1993): Immunocytochemical analysis of the coiled body in the cell cycle and during cell proliferation. Proc Natl Acad Sci USA 90:1947-1951.
3. Antoniou M, Carmo-Fonseca M, Ferreira J, Lamond A (1993): Nuclear organization of splicing snRNPs during differentiation of murine erythroleukemia cells in vitro. J Cell Biol 123:1055-1068.
4. Bailey A, Li Z, Pavelitz T, Weiner A (1995): Adenovirus type 12-induced fragility of the human RNU2 locus requires U2 small nuclear RNA transcriptional regulatory elements. Mol Cell Biol 15:6246-6255.
5. Bauer DW, Murphy C, Wu ZW, Wu CHH, Gall JG (1994): In vitro assembly of coiled bodies in Xenopus egg extract. Mol Biol Cell 5:633-644.
6. Berezney R (1991): Visualizing DNA replication sites in the cell nucleus. Semin Cell Biol 2:103-115.
7. Beven AF, Simpson GG, Brown JWS, Shaw PJ (1995): The organization of spliceosomal components in the nuclei of higher plants. J Cell Sci 108:509-518.
8. Bohmann K, Ferreira J, Santama N, Weis K, Lamond A (1995a): Molecular analysis of the coiled body. J Cell Sci 19:107-113.
9. Bohmann K, Ferreira J, Lamond A (1995b): Mutational analysis of p80 coilin indicates a functional interaction between coiled bodies and the nucleolus. J Cell Biol 131:817-831.
10. Brasch K, Ochs RL (1992): Nuclear bodies (NBs): A newly "rediscovered" organelle. Exp Cell Res 202:211-223.
11. Callan HG, Gall JG (1991): Association of RNA with the B and C snurposomes of Xenopus oocyte nuclei. Chromosoma 101:69-82.
12. Callan HG, Gall JG, Murphy C (1991): Histone genes are located at the sphere loci of Xenopus lampbrush chromosomes. Chromosoma 101:245-251.
13. Carmo-Fonseca M, Tollervey D, Pepperkok R, Barabino SML, Merdes A, Brunner C, Zamore PD, Green MR, Hurt E, Larnond AI (1991): Mammalian nuclei contain foci which are highly enriched in components of the pre-mRNA splicing machinery. EMBOJ 10:195-206.
14. Carmo-Fonseca M, Pepperkok R, Carvalho MT, Lamond AI (1992): Transcription-dependent colocalization of the U1, U2, U4/U6 and U5 snRNPs in coiled bodies. J Cell Biol 117:1-14.
15. Carmo-Fonseca M, Ferreira J, Lamond AI (1993): Assembly of snRNP-containing coiled bodies is regulated in interphase and mitosis: Evidence that the coiled body is a kinetic nuclear structure. J Cell Biol 120:841-852.
16. Chan EKL, Takano S, Andrade LEC, Hamel JC, Matera AG (1994): Structure, expression and chromosomal localization of the human p80-coilin gene. Nucleic Acids Res 22:4462-4469.
17. Coovert D, Le T, McAndrew P, Strasswimmer J, Crawford T, Mendell J, Coulson S, Androphy E, Prior T, Burghes A (1997): The survival motor neuron protein in spinal muscular atrophy. Hum Mol Genet 6:1205-1214.
18. Cremer T, Kurz A, Zirbel R, Dietzel S, Rinke B, Schrock E, Speicher MR, Mathieu U, Jauch A, Emmerich P, Scherthan H, Ried T, Cremer C, Lichter P (1993): Role of chromosome territories in the functional compartmentalization of the cell nucleus. Cold Spring Harbor Symp Quant Biol 58:777-792.
19. de Jong L, Grande M, Mattern K, Schul W, van Uriel R (1996): Nuclear domains involved in RNA synthesis, RNA processing and replication. Crit Rev Eukaryot Gene Expr 6:215-246.
20. Dingwall C, Laskey R (1991): Nuclear targeting sequences: A consensus? Trends Biochem Sci 16:478-481.
21. Du L, Warren S (1997): A functional interaction between the carboxy-terminal domain of RNA polymerase II and pre-mRNA splicing. J Cell Biol 136:5-18.
22. Elefanty A, Antoniou M, Custodio N, Carmo-Fonseca M, Grosveld F (1996): GATA transcription factors associate with a novel class of nuclear bodies in erythroblasts and megakaryocytes. EMBO J 15:319-333.
23. Elicieri GL, Ryerse JS (1984): Detection of intranuclear clusters of Sm antigens with monoclonal anti-Sm antibodies by immunoelectron microscopy. J Cell Physiol 121:449-451.
24. Fakan S (1994): Perichromatin fibrils are in situ forms of nascent transcripts. Trends Cell Biol 4:86-90.
25. Fakan S, Bernhard W (1971): Localisation of rapidly and slowly labelled nuclear RNA as visualized by high resolution autoradiography. Exp Cell Res 67:129-141.
26. Fakan S, Leser G, Martin TE (1984): Ultrastructural distribution of nuclear ribonucleoproteins as visualized by immunocytochemistry on thin sections. J Cell Biol 98:358-363.
27. Ferreira J, Carmo-Fonseca M, Lamond A (1994): Differential interaction of splicing snRNPs with coiled bodies and interchromatin granules during mitosis and assembly of daughter cell nuclei. J Cell Biol 126:11-23.
28. Fischer U, Liu Q, Dreyfuss G (1997): The SMN-SIP1 complex has an essential role in spliceosomal snRNP biogenesis. Cell 90:1023-1029.
29. Frey MR, Matera AG (1995): Coiled bodies contain U7 small nuclear RNA and associate with specific DNA sequences in interphase cells. Proc Natl Acad Sci USA 92:5915-5919.
30. Gall JG, Callan HG (1989): The sphere organelle contains small nuclear ribonucleoproteins. Proc Natl Acad Sci USA 86:6635-6639.
31. Gall JG, Stephenson EC, Erba HP, Diaz MO, Barsacchi-Pilone G (1981): Histone genes are located at the sphere loci of newt lampbrush chromosomes. Chromosoma 84: 159-171.
32. Gall JG, Tsvetkov A, Wu Z, Murphy C (1995): Is the sphere organelle/coiled body a universal nuclear component? Dev Genet 16:25-35.
33. Gama-Carvalho M, Krauss R, Chiang L, Valcarcel J, Green M, Carmo-Fonseca M (1997): Targeting of U2AF65 to sites of active splicing in the nucleus. J Cell Biol 137:975-987.
34. Gao L, Frey MR, Matera AG (1997): Human genes encoding U3 snRNA associate with coiled bodies in interphase cells and are clustered on chromosome 17p11.2 in a complex inverted repeat structure. Nucleic Acids Res 25:4740-4747.
35. Ghetti A, Pinol-Roma S, Michael WM, Morandi C, Dreyfuss G (1992): hnRNP I, the polypyrimidine tract-binding protein: distinct nuclear localization and association with hnRNAs. Nucleic Acids Res 20:3671-3678.
36. Görlich D (1997): Nuclear protein import. Curr Opin Cell Biol 9:412-419.
37. Grande M, van der Kraan I, de Jong L, van Driel R (1997): Nuclear distribution of transcription factors in relation to sites of transcription and RNA polymerase II. J Cell Sci 110:1781-1791.
38. Hoeijmakers J, Egly J, Vermeulen W (1996): TFIIH: A key component in multiple DNA transactions. Curr Opin Genet Dev 6:26-33.
39. Hozák P (1995): Catching RNA polymerase I in Flagranti: Ribosomal genes are transcribed in the dense fibrillar component of the nucleolus. Exp Cell Res 216:285-289.
40. Hozák P, Jackson D, Cook P (1994): Replication factories and nuclear bodies: The ultrastructural characterization of replication sites during the cell cycle. J Cell Sci 107: 2191-2202.
41. Huang S, Spector DL (1992): U1 and U2 small nuclear RNAs are present in nuclear speckles. Proc Natl Acad Sci USA 89:305-308.
42. + RNA. J Cell Biol 126:877-899.
43. Iborra FJ, Pombo A, Jackson DA, Cook PR (1996): Active RNA polymerases are localized within discrete transcription "factories" in human nuclei. J Cell Sci 109:1427-1436.
44. Izaurralde E, Mattaj IW (1992): Transport of RNAbetween nucleus and cytoplasm. Sem in Cell Biol 3:279-288.
45. Jiménez-García LF, Segura-Valdez MdL, Ochs RL, Spector DL (1994): Nucleologenesis: U3 snRNA-containing prenucleolar bodies move to sites of active pre-rRNA transcription after mitosis. Mol Biol Cell 5:955-966.
46. Jordan P, Cunha C, Carmo-Fonseca M (1997): The cdk7-cyclin H-MAT1 complex associated with TFIIH is localized in coiled bodies. Mol Biol Cell 8:1207-1217.
47. Karpen GH, Schaefer JE, Laird CD (1988): A Drosophila rRNA gene located in euchromatin is active in transcription and nucleolus formation. Genes Dev 2:1745-1763.
48. Lamond AI, Carmo-Fonseca M (1993): The coiled body. Trends Cell Biol 3:198-204.
49. Lefebvre S, Burglen L, Reboullet S, Clermont O, Burlet P, Viollet L, Benichou B, Cruaud C, Millasseau P, Zeviani M, Le Pasilier D, Frezal J, Cohen D, Weissenbach J, Munnich A, Melki J (1995): Identification and characterization of a spinal muscular atrophy-determining gene. Cell 80:155-165.
50. Lefebvre S, Burlet P, Liu Q, Bertrandy S, Clermont O, Munnich A, Dreyfuss G, Melki J (1997): Correlation between severity and SMN protein level in spinal muscular atrophy. Nat Genet 16:265-269.
51. Liu Q, Dreyfuss G (1996): A novel nuclear structure containing the survival of motor neurons protein. EMBO J 15:3555-3565.
52. Liu Q, Fischer U, Wang F, Dreyfuss G (1997): The spinal muscular atrophy disease gene product, SMN, and its associated protein SIP1 are in a complex with spliceosomal snRNP proteins. Cell 90:1013-1021.
53. Lyon C, Bohmann K, Sleeman J, Lamond A (1997): Inhibition of protein dephosphorylation results in the accumulation of splicing snRNPs and coiled bodies within the nucleolus. Exp Cell Res 230:84-93.
54. Malatesta M, Zancanaro C, Martin T, Chan E, Amalric FLR, Vogel P, Fakan S (1994): Is the coiled body involved in nucleolar functions? Exp Cell Res 211:415-419.
55. Mangin M, Ares MJ, Weiner A (1985): U1 small nuclear RNA genes are subject to dosage compensation in mouse cells. Science 229:272-275.
56. Matera AG, Ward DC (1993): Nucleoplasmic organization of small nuclear ribonucleoproteins in cultured human cells. J Cell Biol 121:715-727.
57. Matera AG, Weiner AM, Schmid CW (1990): Structure and evolution of the U2 small nuclear RNA multigene family in primates: Gene amplification under natural selection? Mol Cell Biol 10:5876-5882.
58. Matera AG, Tycowski KT, Steitz JA, Ward DC (1994): Organization of small nucleolar ribonucleoproteins (snoRNPs) by flourescence in situ hybridization and immunocytochemistry. Mol Biol Cell 5:1289-1299.
59. Meier UT, Blobel G (1992): Nopp140 shuttles on tracks between nucleolus and cytoplasm. Cell 70:127-138.
60. Meier UT, Blobel G (1994): NAP57, a mammalian nucleolar protein with a putative homolog in yeast and bacteria. J Cell Biol 127:1505-1514.
61. Monneron A, Bernhard W (1969): Fine structural organization of the interphase nucleus in some mammalian cells. J Ultrastruct Res 27:266-288.
62. Noble S, Guthrie C (1996): Transcriptional pulse-chase analysis reveals a role for a novel snRNP-associated protein in the manufacture of spliceosomal snRNPs. EMBO J 15:4368-4379.
63. Ochs R, Stein TJ, Tan E (1994): Coiled bodies in the nucleolus of breast cancer cells. J Cell Sci 107:385-399.
64. O'Keefe RT, Mayeda A, Sadowski CL, Krainer AR, Spector DL (1994): Disruption of pre-mRNA splicing in vivo results in reorganization of splicing factors. J Cell Biol 124:249-260.
65. Pavelitz T, Rushé L, Matera AG, Scharf J, Weiner AM (1995): Concerted evolution of the tandem array encoding primate U2 small nuclear RNA occurs without changing the cytological context of the RNU2 locus. EMBO J 14: 169-177.
66. Pinol-Roma S, Adam SA, Do Choi Y, Dreyfuss G (1989): Ultraviolet-induced cross-linking of RNA to proteins in vivo. Methods Enzymol 180:410-418.
67. Ramon y Cajal SR (1903): Un sencillo metodo de coloracion selectiva del reticulo protoplasmico y sus efectos en los diverses organos nerviosos de vertebrados y invertebrados. Trab Lab Invest Biol (Madrid) 2:129-221.
68. Raska I, Andrade LEC, Ochs RL, Chan EKL, Chang C-M, Roos G, Tan EM (1991): Immunological and ultrastructural studies of the nuclear coiled body with autoimmune antibodies. Exp Cell Res 195:27-37.
69. Roth MB (1995): Spheres, coiled bodies and nuclear bodies. Curr Opin Cell Biol 7:325-328.
70. Schrank B, Gotz R, Gunnersen J, Ure J, Toyka K, Smith A, Sendtner M (1997): Inactivation of the survival motor neuron gene, a candidate gene for human spinal muscular atrophy, leads to massive cell death in early mouse embryos. Proc Natl Acad Sci USA 94:9920-9925.
71. Schul W, van Driel R, de Jong L (1998): Coiled bodies and U2 snRNAgenes adjacent to coiled bodies are enriched in factors required for snRNA transcription. Mol Biol Cell (in press).
72. Smith K, Carter K, Johnson CV, Lawrence JB (1995): U2 and U1 snRNA gene loci associate with coiled bodies. J Cell Biochem 59:473-485.
73. Tuma RS, Stolk JA, Roth MB (1993): Identification and characterization of a sphere organelle protein. J Cell Biol 122:767-773.
74. van Gool A, van der Horst G, Citterio E, Hoeijmakers J (1997): Cockayne syndrome: Defective repair of transcription? EMBO J 16:4155-4162.
75. van Steensel B, Brink M, van der Meulen K, van Binnendijk E, Wansink D, de Jong L, de Kloet E, van Driel R (1995): Localization of the glucocorticoid receptor in discrete clusters in the cell nucleus. J Cell Sci 108:3003-3011.
76. Weis K, Mattaj I, Lamond A (1995): Identification of hSRP1 alpha as a functional receptor for nuclear localization sequences. Science 268:1049-1053.
77. Wu C-HH, Gall JG (1993): U7 small nuclear RNA in C snurposomes of the Xenopus germinal vesicle. Proc Natl Acad Sci USA 90:6257-6259.
78. Wu Z, Murphy C, Callan HG, Gall JG (1991): Small nuclear ribonucleoproteins and heterogeneous nuclear ribonucleoproteins in the amphibian germinal vesicle: Loops, spheres and snurposomes. J Cell Biol 113:465-483.
79. Wu Z, Murphy C, Gall JG (1994): Human p80-coilin is targeted to sphere organelles in the amphibian germinal vesicle. Mol Biol Cell 5:1119-1127.
80. Wu C, Murphy C, Gall J (1996): The Sm binding site targets U7 snRNA to coiled bodies (spheres) of amphibian oocytes. RNA 2:811-823.
81. Yannoni Y, White K (1997): Association of the neuron-specific RNA binding domain-containing protein ELAV with the coiled body in Drosophila neurons. Chromosoma 105:332-341.
82. Zeng C, Kim E, Warren S, Berget S (1997): Dynamic relocation of transcription and splicing factors dependent on transcription activity. EMBO J 16:1401-1412.