Sequence-tagged sites (STS) for studies of molecular epidemiology of scleroderris canker of conifers

Theoretical and Applied Genetics

Volumn 97, Issue 5-6, 1998, Pages 789-796

  Dusabenyagasani, M ^a   Lecours, N ^a   Hamelin, R C ^a  

^a LAURENTIAN FORESTRY CENTRE   (Canada)

Author keywords

Gremmeniella abietina; LIS SSCP; Microsatellite; PCR; Psychrophilic biotype; STS markers

Indexed keywords

ALLELE; BIOTYPE; CONIFER; ELECTROPHORESIS; EUROPE; FUNGAL GENOME; GENE SEQUENCING; MYCOSIS; NORTH AMERICA; PATHOGENESIS; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED MICROSATELLITE; SCLERODERRIS CANKER; SEQUENCE TAGGED SITE; SINGLE STRAND CONFORMATION POLYMORPHISM;

GREMMENIELLA ABIETINA;

EID: 0031796712     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050957     Document Type: Article

References (39)

1. Bagley MJ, Medrano JF, Gall GAE (1997) Polymorphic molecular markers from anonymous nuclear DNA for genetic analysis of populations. Mol Ecol 6:309-320
2. Barrett RO (1984) The use of a quarantine to control scleroderris canker in New York. In: Manion PD (ed) Scleroderris canker of conifers. (Proc Int Symp). M Nijhoff and Dr W Junk Pub, The Hague, The Netherlands, pp 243-247
3. Benhamou N, Ouellctte GB, Asselin A, Maicas E (1984) The use of polyacrylamide gel electrophoresis for rapid differentiation of Gremmeniella abietina isolates. In: Manion PD (ed) Scleroderris canker of conifers. (Proc Int Sympl). M Nijhoff and Dr W Junk Pub. The Hague, The Netherlands, pp 68-76
4. Bernier L, Hamelin RC, Ouellctte GB (1994) Comparison of ribosomal DNA length and restriction site polymorphisms in Gremmeniella and Ascocalyx isolates. Appl Environ Microbiol 60:1279-1286
5. Bodencs C, Laigret F, Kremer A (1996) Inheritance and molecular variations of PCR-SSCP fragments in pedunculate oak (Quercus robur L.) Theor Appl Genet 93:348-354
6. Burt A, Carter DA, White TJ, Taylor JW (1994) DNA sequencing with arbitrary primer pairs. Mol Ecol 3:523-525
7. Donaubauer K (1972) Distribution and hosts of Scleroderris logerbergii in Europe and North America. Eur J For Pathol 2:6-11
8. Dorworth CE, Krywienczyk J (1975) Comparisons among isolates of Gremmeniella abietina by means of growth rate, conidia measurement, and immunogenic reaction. Can J Bot 53: 2506-2525
9. Dorworth CE, Krywienczyk J, Skilling DD (1977) New York isolates of Gremmeniella abietina (Scleroderris lagerbergii) identical in immunogenic reaction to European isolates. Plant Dis Rep 61:887-890
10. Hamelin RC, Rail J (1997) Phylogeny of Gremmeniella spp. based on sequences of the 5.8S rDNA and internal transcribed spacer region. Can J Bot 75:693-698
11. Hamelin RC, Ouellette GB, Bernier L (1993) Identification of Gremmeniella abietina races with random amplified polymorphic DNA markers. Appl Environ Microbiol 59:1752-1755
12. Hamclin RC, Lecours N, Hansson P, Hellgren M, Laflamme G (1996) Genetic differentiation within the European race of Gremmeniella abietina. Mycol Res 100:49-56
13. Hamelin RC, Lecours N, Laflamme G (1997) Molecular evidence of distinct introductions of the European race of Scleroderris canker into North America. In: Laflamme G, Hamelin RC, Berube J (eds) Foliage, shoot and stem diseases of trees. Proc IUFRO Working Party 7.02.02. May 25 31, 1997. Quebec City, Que., Canada. Nat. Resour. Can., Can. For. Serv., Laurentian For. Cent., Sainte-Foy, Que., Canada. Inf. Rep. LAU-X-122. pp 190-199
14. Hantula J, Müller MM (1997) Variation within Gremmeniella abietina in Finland and other countries as determined by Random Amplified Microsatellites (RAMS). Mycol Res 101:169-175
15. Hantula J, Dusabenyagasani M, Hamelin RC (1996) Random amplified microsatellitcs (RAMS) novel method for characterizing genetic variation within fungi. Eur J For Pathol 26: 159-166
16. Hellgren M, Högberg N (1995) Ecotypic variation of Gremmeniella abietina in northern Europe: disease patterns reflected by DNA variation. Can J Bot 73: 1531-1539
17. Huttley GA, Durbin ML, Glover DE, Clegg MT (1997) Nucleotide polymorphism in the chalcone synthase-A locus and evolution of the chalcone synthase multigene family of common morning glory Ipomea purpurea. Mol Ecol 6:549-558
18. Laflamme G. Lachance D (1987) Large infection center of Scleroderris canker (European race) in Quebec province. Plant Dis 71:1041-1043
19. Lecours N, Toti L, Sieber TN, Petrini O (1994) Pectic enzyme patterns as a taxonomic tool for the characterization of Gremmeniella spp. isolates. Can J Bot 72:891-896
20. Lessa EP, Applebaum G (1993) Screening techniques for detecting allelic variation in DNA sequences. Mol Ecol 2:119-129
21. Liu YC, Cortesi P, Double ML, MacDonald WL, Milgroom MG (1996) Diversity and multilocus genetic structure in populations of Cryphonectria parasitica. Phytopathology 86:1344-1351
22. Marosy M, Patton RF, Upper CD (1989) A conducive day concept to explain the effect of low temperature on the development of Scleroderris shoot blight. Phytopathology 79:1293-1301
23. Maruya E, Saji H, Yokoyama S (1996) PCR-LIS-SSCP (low ionic strength single-stranded conformation polymorphism) a simple method for high-resolution allele typing of HLA-DRB1,-DQB1, and-DPB1 Genome Res 6:51-57
24. Morelet M (1980) La maladie à Brunchorstia. I. Position systématique et nomenclature du pathogène. Eur J For Pathol 10:268-277
25. Olson M, Hood L, Cantor D, Botstein D (1989) A common language for physical mapping of the human genome. Science 245:1434-1435
26. Orita M, Iwahana H, Kanazawa H, Kayashi K, Sekiya T (1989) Detection of polymorphisms of human DNA by gel electrophoresis and single-strand conformation polymorphisms. Proc Natl Acad Sci USA 86:2766-2770
27. Orti G, Hare MP, Avise JC (1997) Detection and isolation of nuclear haplotypes by PCR-SSCP. Mol Ecol 6:575-580
28. Petit RJ, Pineau E, Demesure B, Bacilieri R, Ducousso A, Kremer A (1997) Chloroplast DNA footprints of postglacial recolonization by oaks. Proc Natl Acad Sci USA 94:9996-10001
29. Petrini O, Toti L, Petrini LE, Heiniger U (1990) Gremmeniella abietina and G. laricina in Europe: characterization and identification of isolates and laboratory strains by soluble protein electrophoresis. Can J Bot 68:2629-2635
30. Quiros CF, This P, Laudie M, Benet A, Chevre AM, Delseny M (1995) Analysis of a set of RAPD markers by hybridization and sequencing in Brassica: a note of caution. Plant Cell Rep 14:630-634
31. Skilling DD (1969) Spore dispersal by Scleroderris lagerbergii under nursery and plantation conditions. Plant Dis Rep 53:291-295
32. Skilling DD, Schneider B, Fasking D (1986) Biology and control of scleroderris canker in North America. USDA For Serv, North Central Exp Stn Res Pap NC-275
33. Skilling DD, Kienzler M, Haynes E (1984) Distribution of serological strains of Gremmeniella abietina in eastern North America. Plant Dis 68:937-938
34. Smulders MJM, Bredmeijer G, Rus-Kortekaas W, Arens P, Vosman B (1997) Use of short microsatellites from database sequences to generate polymorphisms among Lycopersicon esculentum cultivars and accessions of other Lycopersicon species. Theor Appl Genet 97:264-272
35. Thomas MR, Scott NS (1993) Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs). Theor Appl Genet 86:985-990
36. Uotila A (1993) Genetic variation of Gremmeniella abietina in Finland. In: Alkanen JR, AaltoT, Lahti MJ (eds) Forest pathological research in northern forests with a special reference to abiotic stress factors. Metsantutkimuslaitoksen tiedonantoja, Lapland, Finland, pp 119-122
37. Uotila A (1997) The crossing between type A and type B Gremmeniella abietina produces offspring with poor vitality. In: Laflamme G, Hamelin RC, Berube J (eds) Foliage, Shoot and Stem Diseases of Trees. Proc IUFRO Working Party 7.02.02. May 25-31, 1997. Quebec City, Que., Canada. Nat. Resour. Can., Can. For. Serv., Laurentian For. Cent., Sainte-Foy, Que., Canada. Inf. Rep. LAU-X-122. pp 208
38. Vosman B, Arens P (1997) Molecular characterization of GATA/GACA microsatellite repeats in tomato. Genome 40:25-33
39. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M (ed) PCR protocols: a guide to methods and applications. Academic Press. San Diego, pp 315-322