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Volumn 25, Issue 4, 1998, Pages 664-675

Critical factors in the performance and cost of two-dimensional gene scanning: RB1 as a model

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTIC METHOD; ARTICLE; BASE PAIRING; COST BENEFIT ANALYSIS; GENE MUTATION; GENE TARGETING; GENETIC ANALYSIS; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION;

EID: 0031695893     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/98254dt06     Document Type: Article
Times cited : (11)

References (33)
  • 1
    • 0029163018 scopus 로고
    • Intramolecular DNA melting between stable helical segments: Melting theory and metastable states
    • .Abrams, E.S., S.E. Murdaugh and L.S. Lerman. 1995. Intramolecular DNA melting between stable helical segments: melting theory and metastable states. Nucleic Acids Res. 23:2775-2783.
    • (1995) Nucleic Acids Res. , vol.23 , pp. 2775-2783
    • Abrams, E.S.1    Murdaugh, S.E.2    Lerman, L.S.3
  • 2
    • 0028151238 scopus 로고
    • Oligonucleotide arrays: New concepts and possibilities
    • Chetverin, A.B. and F.R. Kramer. 1994. Oligonucleotide arrays: new concepts and possibilities. Bio/Technology 12:1093-1099.
    • (1994) Bio/Technology , vol.12 , pp. 1093-1099
    • Chetverin, A.B.1    Kramer, F.R.2
  • 3
    • 0027325822 scopus 로고
    • A rapid, efficient, and sensitive assay for simultaneous detection of multiple cystic fibrosis mutations
    • Costes, B., P. Fanen, M. Goossens and N. Ghanem. 1993. A rapid, efficient, and sensitive assay for simultaneous detection of multiple cystic fibrosis mutations. Hum. Mutat. 2:185-191.
    • (1993) Hum. Mutat. , vol.2 , pp. 185-191
    • Costes, B.1    Fanen, P.2    Goossens, M.3    Ghanem, N.4
  • 4
    • 0031038324 scopus 로고    scopus 로고
    • Slowly but surely towards better scanning for mutations
    • [Erratum: Trends Genet. 1997,13:208]
    • Cotton, R.G. 1997. Slowly but surely towards better scanning for mutations [Erratum: Trends Genet. 1997,13:208]. Trends Genet. 13:43-46.
    • (1997) Trends Genet. , vol.13 , pp. 43-46
    • Cotton, R.G.1
  • 5
    • 0031051628 scopus 로고    scopus 로고
    • Double-gradient DGGE for optimized detection of DNA point mutations
    • Cremonesi, L., S. Firpo, M. Ferrari, P.G. Righetti and C. Gelfi. 1997. Double-gradient DGGE for optimized detection of DNA point mutations. BioTechniques 22:326-330.
    • (1997) BioTechniques , vol.22 , pp. 326-330
    • Cremonesi, L.1    Firpo, S.2    Ferrari, M.3    Righetti, P.G.4    Gelfi, C.5
  • 6
    • 0032241670 scopus 로고    scopus 로고
    • A simple system for automated two-dimensional electrophoresis: Applications to genetic testing
    • In press
    • Dhanda, R.K., W.M. Smith, C.B. Scott, C. Eng and J. Vijg. A simple system for automated two-dimensional electrophoresis: applications to genetic testing. Genetic Testing (In press).
    • Genetic Testing
    • Dhanda, R.K.1    Smith, W.M.2    Scott, C.B.3    Eng, C.4    Vijg, J.5
  • 7
    • 0030903927 scopus 로고    scopus 로고
    • Genetic testing: The problems and the promise
    • Eng, C. and J. Vijg. 1997. Genetic testing: the problems and the promise. Nature Biotechnol. 15:422-426.
    • (1997) Nature Biotechnol , vol.15 , pp. 422-426
    • Eng, C.1    Vijg, J.2
  • 8
    • 0022506980 scopus 로고
    • A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma
    • Friend, S.H., R. Bernards, S. Rogelj, R.A. Weinberg, J.M. Rapaport, D.M. Albert and T.P. Dryja. 1986. A human DNA segment with properties of the gene that predisposes to retinoblastoma and osteosarcoma. Nature 323:643-646.
    • (1986) Nature , vol.323 , pp. 643-646
    • Friend, S.H.1    Bernards, R.2    Rogelj, S.3    Weinberg, R.A.4    Rapaport, J.M.5    Albert, D.M.6    Dryja, T.P.7
  • 9
    • 0028217614 scopus 로고
    • Broadrange' DGGE for single-step mutation scanning of entire genes: Application to human phenylalanine hydroxylase gene
    • Guldberg, P. and F. Guttler. 1994. 'Broadrange' DGGE for single-step mutation scanning of entire genes: application to human phenylalanine hydroxylase gene. Nucleic Acids Res. 22:880-881.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 880-881
    • Guldberg, P.1    Guttler, F.2
  • 10
    • 0027177691 scopus 로고
    • Molecular analysis of phenyketonuria in Denmark: 99% of the mutations detected by denaturing gradient gel electrophoresis
    • Guldberg, P., K.F. Henriksen and F. Guttler. 1993. Molecular analysis of phenyketonuria in Denmark: 99% of the mutations detected by denaturing gradient gel electrophoresis, Genomics 17:141-146.
    • (1993) Genomics , vol.17 , pp. 141-146
    • Guldberg, P.1    Henriksen, K.F.2    Guttler, F.3
  • 11
    • 0029829670 scopus 로고    scopus 로고
    • Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis
    • Hacia, J.G., L.C. Brody, M.S. Chee, S.P. Fodor and F.S. Collins. 1996. Detection of heterozygous mutations in BRCA1 using high density oligonucleotide arrays and two-colour fluorescence analysis [see comments]. Nature Genet. 14:441-447.
    • (1996) Nature Genet. , vol.14 , pp. 441-447
    • Hacia, J.G.1    Brody, L.C.2    Chee, M.S.3    Fodor, S.P.4    Collins, F.S.5
  • 12
    • 0029923481 scopus 로고    scopus 로고
    • High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR
    • Hecker, K.H. and K.H. Roux. 1996. High and low annealing temperatures increase both specificity and yield in touchdown and stepdown PCR. BioTechniques 20:478-485.
    • (1996) BioTechniques , vol.20 , pp. 478-485
    • Hecker, K.H.1    Roux, K.H.2
  • 14
    • 0023476284 scopus 로고
    • Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis
    • Lerman, L.S. and K. Silverstein. 1987. Computational simulation of DNA melting and its application to denaturing gradient gel electrophoresis. Methods Enzymol. 155:482-501.
    • (1987) Methods Enzymol. , vol.155 , pp. 482-501
    • Lerman, L.S.1    Silverstein, K.2
  • 15
    • 0029966662 scopus 로고    scopus 로고
    • Multiplex co-amplification of 24 retinoblastoma gone exons after pre-ampliffcation by long-distance PCR
    • Li, D. and J. Vijg. 1996. Multiplex co-amplification of 24 retinoblastoma gone exons after pre-ampliffcation by long-distance PCR. Nucleic Acids Res. 24:538-539.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 538-539
    • Li, D.1    Vijg, J.2
  • 16
    • 0028800690 scopus 로고
    • Restriction endonuclease fingerprinting (REF): A sensitive method for screening mutations in long, contiguous segments of DNA
    • Liu, Q. and S.S. Sommer. 1995. Restriction endonuclease fingerprinting (REF): a sensitive method for screening mutations in long, contiguous segments of DNA. BioTechniques 18:470-477.
    • (1995) BioTechniques , vol.18 , pp. 470-477
    • Liu, Q.1    Sommer, S.S.2
  • 17
    • 0028876575 scopus 로고
    • Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases
    • Mashal, R.D., J. Koontz und J. Sklar 1995. Detection of mutations by cleavage of DNA heteroduplexes with bacteriophage resolvases. Nature Genet. 9:177-183.
    • (1995) Nature Genet. , vol.9 , pp. 177-183
    • Mashal, R.D.1    Koontz, J.2    Sklar, J.3
  • 19
    • 0028260960 scopus 로고
    • Relative efficiency of denaturing gradient gel electrophoresis and single strand conformation polymorphism in the detection of mutations in exons 5 to 8 of the p53 gene
    • Moyret, C., C. Theillet, P.L. Puig, J.P. Moles, G. Thomas and R. Hamelin. 1994. Relative efficiency of denaturing gradient gel electrophoresis and single strand conformation polymorphism in the detection of mutations in exons 5 to 8 of the p53 gene. Oncogene 9:1739-1743.
    • (1994) Oncogene , vol.9 , pp. 1739-1743
    • Moyret, C.1    Theillet, C.2    Puig, P.L.3    Moles, J.P.4    Thomas, G.5    Hamelin, R.6
  • 22
    • 0031903504 scopus 로고    scopus 로고
    • Comprehensive mutational scanning of the p53 coding region by two-dimensional electrophoresis
    • Rines, R.D., N.J. van Orsouw, I. Sigalas, F.P. Li, C. Eng and J. Vijg. 1998. Comprehensive mutational scanning of the p53 coding region by two-dimensional electrophoresis. Carcinogenesis 19:979-984.
    • (1998) Carcinogenesis , vol.19 , pp. 979-984
    • Rines, R.D.1    Van Orsouw, N.J.2    Sigalas, I.3    Li, F.P.4    Eng, C.5    Vijg, J.6
  • 23
    • 0028952289 scopus 로고
    • Optimization and troubleshooting in PCR
    • Roux, K.H. 1995. Optimization and troubleshooting in PCR. PCR Methods Appl. 4:185-194.
    • (1995) PCR Methods Appl. , vol.4 , pp. 185-194
    • Roux, K.H.1
  • 24
    • 0026528056 scopus 로고
    • Screening for mutations by RNA single-strand conformation polymorphism (rSSCP): Comparison with DNA-SSCP
    • Sarkar, G., H.S. Yoon and S.S. Sommer. 1992. Screening for mutations by RNA single-strand conformation polymorphism (rSSCP): comparison with DNA-SSCP. Nucleic Acids Res. 20:871-878.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 871-878
    • Sarkar, G.1    Yoon, H.S.2    Sommer, S.S.3
  • 25
    • 0031000607 scopus 로고    scopus 로고
    • Mutational analysis of the hMLH1 gene using an automated two-dimensional DNA typing system
    • Sasaki, S., T. Tokino, T. Miyatsu, T. Muto and Y. Nakamura. 1997. Mutational analysis of the hMLH1 gene using an automated two-dimensional DNA typing system. Hum. Mutat. 9:164-171.
    • (1997) Hum. Mutat. , vol.9 , pp. 164-171
    • Sasaki, S.1    Tokino, T.2    Miyatsu, T.3    Muto, T.4    Nakamura, Y.5
  • 26
    • 0027193630 scopus 로고
    • The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions
    • Sheffield, VC, J.S. Beck, A.E. Kwitek, D.W. Sandstrom and E.M. Stone. 1993. The sensitivity of single-strand conformation polymorphism analysis for the detection of single base substitutions. Genomics 16:325-332.
    • (1993) Genomics , vol.16 , pp. 325-332
    • Sheffield, V.C.1    Beck, J.S.2    Kwitek, A.E.3    Sandstrom, D.W.4    Stone, E.M.5
  • 27
    • 0032234771 scopus 로고    scopus 로고
    • Accurate high throughput "snapshot"detection of hMLH1 mutations by two-dimensional DNA electrophoresis
    • In press
    • Smith, W.M., N.J. van Orsouw, E.A. Fox, R.D. Kolodner, J. Vijg and C. Eng. Accurate high throughput "snapshot"detection of hMLH1 mutations by two-dimensional DNA electrophoresis. Genetic Testing. (In press).
    • Genetic Testing
    • Smith, W.M.1    Van Orsouw, N.J.2    Fox, E.A.3    Kolodner, R.D.4    Vijg, J.5    Eng, C.6
  • 28
    • 0032524750 scopus 로고    scopus 로고
    • Rapid design of denaturing gradient-based two-dimensional electrophoretic gene mutational scanning tests
    • van Orsouw, N.J., R.K. Dhanda, R.D. Rines, W.M. Smith, I. Sigalas, C. Eng and J. Vijg. 1998. Rapid design of denaturing gradient-based two-dimensional electrophoretic gene mutational scanning tests. Nucleic Acids Res. 26:2398-2406.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 2398-2406
    • Van Orsouw, N.J.1    Dhanda, R.K.2    Rines, R.D.3    Smith, W.M.4    Sigalas, I.5    Eng, C.6    Vijg, J.7
  • 29
    • 0029943489 scopus 로고    scopus 로고
    • Mututionul scanning of large genes by extensive PCR multiplexing and two-dimensional electrophoresis: Application to the RB 1 gene
    • van Orsouw, N.J., D. Li, P. van der Vlies, H. Scheffer, C. Eng, C.H. Buys, F.P. Li and J. Vijg. 1996. Mututionul scanning of large genes by extensive PCR multiplexing and two-dimensional electrophoresis: application to the RB 1 gene. Hum. Mol. Genet. 5:755-761.
    • (1996) Hum. Mol. Genet. , vol.5 , pp. 755-761
    • Van Orsouw, N.J.1    Li, D.2    Van der Vlies, P.3    Scheffer, H.4    Eng, C.5    Buys, C.H.6    Li, F.P.7    Vijg, J.8
  • 31
    • 0029785921 scopus 로고    scopus 로고
    • Comprehensive and accurate mutation scanning of the CFTR gene by two-dimensional DNA electrophoresis
    • Wu, Y., R.M.W. Hofstra, H. Schcffer, A.G. Uitterlinden, E. Mullaart, C.H. Buys, J. Vijg. 1996. Comprehensive and accurate mutation scanning of the CFTR gene by two-dimensional DNA electrophoresis. Hum. Mutat. 8:160-167.
    • (1996) Hum. Mutat. , vol.8 , pp. 160-167
    • Wu, Y.1    Hofstra, R.M.W.2    Schcffer, H.3    Uitterlinden, A.G.4    Mullaart, E.5    Buys, C.H.6    Vijg, J.7
  • 33
    • 0029865533 scopus 로고    scopus 로고
    • Detection of 81 of 81 known mouse beta-globin promoter mutations with T4 endonuclease VII - The EMC method
    • Youil R, B. Kemper and R.G. Cotton. 1996. Detection of 81 of 81 known mouse beta-globin promoter mutations with T4 endonuclease VII - the EMC method. Genomics 32:431-435.
    • (1996) Genomics , vol.32 , pp. 431-435
    • Youil, R.1    Kemper, B.2    Cotton, R.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.