Differential DNA replication origin activities in human normal skin fibroblast and HeLa cell lines

Journal of Molecular Biology

Volumn 273, Issue 3, 1997, Pages 509-518

  Tao, Liang ^a   Nielsen, Torsten ^a   Friedlander, Paula ^a   Zannis Hadjopoulos, Maria ^a   Price, Gerald ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

DNA replication; Human; Nascent DNA; Origin; PCR

Indexed keywords

BETA GLOBIN; HEAT SHOCK PROTEIN 70; IMMUNOGLOBULIN MU CHAIN;

ARTICLE; CELL TRANSFORMATION; CELL TYPE; DNA LIBRARY; DNA REPLICATION; DNA REPLICATION ORIGIN; DNA SEQUENCE; HELA CELL; HUMAN; HUMAN CELL; ONCOGENE C MYC; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SKIN FIBROBLAST; TECHNIQUE;

MAMMALIA;

EID: 0031592932     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1352     Document Type: Editorial

References (66)

1. Aitken A. 14-3-3 proteins on the MAP. Trends Biochem. Sci. 20:1995;95-97.
2. Aitken A., Collinge D. B., van Heusden B. P. H., Isobe T., Roseboom P. H., Rosenfeld G., Soll J. 14-3-3 proteins: a highly conserved, widespread family of eukaryotic proteins. Trends Biochem. Sci. 17:1992;498-501.
3. Aladjem M. I., Groudine M., Brody L. L., Dieken E. S., Fournier R. E. K., Wahl G. M., Epner E. M. Participation of the human β-globin locus control region in initiation of DNA replication. Science. 270:1995;815-819.
4. Alitalo K., Schwab M., Lin C. C., Varmus H. E., Bishop J. N. Homogeneously staining chromosome regions contain amplified copies of abundantly expressed cellular oncogene (c-myc. Proc Natl Acad. Sci. USA. 80:1983;1707-1711.
5. Ariizumi K., Wang Z., Tucker P. W. Immunoglobulin in heavy chain enhancer is located near or in an initiation zone of chromosomal DNA replication. Proc Natl Acad. Sci. USA. 90:1993a;3695-3699.
6. Ariizumi K., Ghosh M. R., Tucker P. W. Elements in the immunoglobulin heavy-chain enhancer directly regulate simian virus 40 ori-dependent DNA replication. Mol. Cell. Biol. 13:1993b;5629-5636.
7. Berberich S., Trivedi A., Daniel D. C., Johnson E. M., Leffak M. In vitroc-myc. J. Mol. Biol. 245:1995;92-109.
8. Biamonti G., Perini G., Weighardt F., Riva S., Giacca M., Norio P., Zentilin L., Diviacco S., Dimitrova D., Falaschi A. A human DNA replication region: localization and transcriptional characterization. Chromosoma. 102:1992;S24-S31.
9. Boulikas T. Common structural features of replication origins in all life forms. J. Cell. Biochem. 60:1996;297-316.
10. Burbelo P. D., Hall A. Hot numbers in signal reduction. Curr. Biol. 5:1995;95-96.
11. Celis J. E., Gesser B., Rasmussen H. H., Madsen P., Leffers H., Dejagaard K., Honore B., Olsen E., Ratz G., Lauridsen J. B., Basse B., Mouritzen S., Hellerup M., Andersen A., Walbum E., Celis A., Bauw G., Puype M., Van Damme J., Vandekerekhove J. Comprehensive two-dimensional gel protein databases offer a global approach to the analysis of human cells: the transformed amnion cells (AMA) master database and its link to genome DNA sequence data. Electrophoresis. 11:1990a;989-1071.
12. Celis J. E., Dejagaard K., Madsen P., Leffers H., Gesser B., Honore b., Rasmussen H. H., Olsen E., Lauridsen J. B., Ratz G., Mouritzen S., Basse B., Hellerup M., Celis A., Fuype M., Van Damme J., Vandekerekhove J. The MRC-5 human embryonal lung fibroblast two-dimensional gel cellular protein database: quantitative identification of polypeptides whose relative abundance differ between quiescent, proliferating and SV40 transformed cells. Electrophoresis. 11:1990b;1072-1113.
13. Chevalier S., Blow J. J. Cell cycle control of replication initiation in eukaryotes. Curr. Opin. Cell Biol. 8:1996;815-821.
14. Collins J. M., Glock M. S., Chu A. K. Nuclease S1 sensitive site in parental deoxyribonucleic acid of cold-and temperature-sensitive mammalian cells. Biochemistry. 21:1982;3414-3419.
15. Coverley D., Laskey R. A. Regulation of eukaryotic DNA replication. Annu. Rev. Biochem. 63:1994;745-776.
16. Dalla-Favera R., Wong-Stall F., Gallo R. C. Onc gene amplification in promyelocytic leukemia line HL60 and primary leukemic cells of the same patient. Nature. 299:1982;61-63.
17. DePamphilis M. L. Eukaryotic DNA replication: anatomy of an origin. Annu. Rev. Biochem. 62:1993a;29-63.
18. DePamphilis M. L. How transcription factors regulate origins of DNA replication in eukaryotic cells. Trends Cell. Biol. 3:1993b;161-167.
19. Dhar V., Mager D., Iqbal A., Schildkraut C. L. The coordinate replication of the human β-globin gene domain reflects it transcriptional activity and nuclease hypersensitivity. Mol. Cell. Biol. 8:1988;4958-4965.
20. Diffley J. F. X., Stillman B. The initiation of chromosomal DNA replication in eukaryotes. Trends Genet. 6:1990;427-432.
21. Dijkwel P. A., Hamlin J. L. Sequence and context effects on origin function in mammalian cells. J. Cell. Biochem. 62:1996;210-222.
22. Diller J. D., Raghuraman M. K. Eukaryotic replication origins: control in space and time. Trends Biochem. Sci. 19:1994;320-325.
23. Diviacco S., Norio P., Zentilin L., Menzo S., Clementi M., Biamonti G., Riva S., Falaschi A., Giacca M. A novel procedure for quantitative polymerase chain reaction by coamplification of competitive templates. Gene. 122:1992;313-320.
24. Edenberg H. J., Huberman J. A. Eukaryotic chromosome replication. Annu. Rev. Genet. 9:1975;245-284.
25. Förster E. An improved general method to generate internal standards for competitive PCR. BioTechniques. 16:1994;18-20.
26. Frappier L., Zannis-Hadjopoulos M. Autonomous replication of plasmids bearing monkey DNA origin-enriched sequences. Proc Natl Acad. Sci. USA. 84:1987;6668-6672.
27. Giacca M., Zentilin L., Norio P., Diviacco S., Dimitrova D., Contreas C., Biamonti G., Perini G., Weighardt F., Riva S., Falaschi A. Fine mapping of a replication origin of human DNA. Proc Natl Acad. Sci. USA. 91:1994;7119-7123.
28. Harlow S. P., Stewart C. C. Quantitation ofc-myc. PCR Methods Applications. 3:1993;163-168.
29. Hatton K. S., Dhar V., Brown E. H., Iqbal M. A., Stuart S., Didamo V. T., Schildkraut C. L. Replication program of active and inactive multigene families in mammalian cells. Mol. Cell. Biol. 8:1988;2149-2158.
30. Hirt B. Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26:1967;365-369.
31. Hozak P., Hassan A. B., Jackson D. A., Cook P. R. Visualization of replication factories attached to nucleoskeleton. Cell. 73:1993;361-373.
32. Huberman J. A. Prokaryotic and eukaryotic replicons. Cell. 82:1995;535-542.
33. Ichimura-Ohshima Y., Morii K., Ichimura T., Araki K., Takahashi Y., Isobe T., Minoshima S., Fukuyama R., Shimizu N., Kuwano R. cDNA cloning and chromosome assignment of the gene for human brain 14-3-3 protein eta chain. J. Neurosci. Res. 31:1992;600-605.
34. Iguchi-Ariga S. M. M., Okazaki T., Itani T., Ogata M., Sato Y., Ariga H. An initiation site of DNA replication with transcriptional enhancer activity present upstream of thec-myc. EMBO J. 7:1988;3135-3142.
35. src. Nucl. Acids Res. 22:1994;498-505.
36. Kaufmann G., Zannis-Hadjopoulos M., Martin R. G. Cloning of nascent monkey DNA synthesized early in the cell cycle. Mol. Cell. Biol. 5:1985;721-727.
37. Khaira, P. Malott, M. Waltz, S. Leffak, M. 1996, The activity of thec-myc, Fourth McGill University International Conference on Regulation of Eukaryotic DNA Replication. Oct, 1996, St. Sauvent, Qc, Canada.
38. Kitsberg D., Selig S., Keshet I., Cedar H. Replication structure of the human β-globin gene domain. Nature. 366:1993;588-590.
39. Kumar S., Giacca M., Norio P., Biamonti G., Riva S., Falaschi A. Utilization of the same DNA replication origin by human cells of different derivation. Nucl. Acids Res. 24:1996;3289-3294.
40. Landry S., Zannis-Hadjopoulos M. Classes of autonomously replicating sequences are found among early-replicating monkey DNA. Biochim. Biophys. Acta. 1088:1991;234-244.
41. Lawlis S. J., Keezer S. M., Gilbert D. M. Chromosome architecture can dictate site-specific initiation of DNA replication inXenopus. J. Cell Biol. 135:1996;1207-1218.
42. Lazo P. A., DiPaolo J. A., Popescu N. C. Amplification of the integrated viral transforming genes of human papillomavirus 18 and its 5′-flanking cellular sequence located near themyc. Cancer Res. 49:1989;4305-4310.
43. Leffak M., James C. D. Opposite replication polarity of the germ line c-myc gene in HeLa cells compared with that of two Burkitt lymphoma cell lines. Mol. Cell. Biol. 9:1989;586-593.
44. Martin R. G., Oppenheim A. Initiation points for DNA replication in nontransformed and simian virus 40-transformed Chinese hamster lung cells. Cell. 11:1977;859-869.
45. McWhinney C., Leffak M. Autonomous replication of a DNA fragment containing the chromosomal replication origin of the humanc-myc. Nucl. Acids Res. 18:1990;1233-1242.
46. Michaud N. R., Fabian J. R., Mathes K. D., Morrison D. K. 14-3-3 is not essential for raf-function: identification of raf-1 proteins that are biologically activated in a 14-3-3- and ras-independent manner. Mol. Cell. Biol. 15:1995;3390-3397.
47. Newport J., Yan H. Organization of DNA into foci during replication. Curr. Opin. Cell Biol. 3:1996;365-368.
48. Nielsen, T. 1995, Human origins of DNA replication: identification, analysis and application. Thesis, McGill University, Montreal, Canada.
49. Nielsen T., Bell D., Lamoureux C., Zannis-Hadjopoulos M., Price G. A reproducible method for identification of human gnomic DNA autonomously replicating sequences. Mol. Gen. Genet. 242:1994;280-288.
50. Ohba R., Matsumoto K., Ishimi Y. Induction of DNA replication by transcription in a region upstream of humanc-myc. Mol. Cell. Biol. 16:1996;5754-5763.
51. Pearson C. E., Frappier L., Zannis-Hadjopoulos M. Plasmids bearing mammalian DNA-replication origin-enriched (ors) fragments initiate semiconservative replication in a cell-free system. Biochim. Biophys. Acta. 1090:1991;156-166.
52. Pfreundschuh M., Shiku H., Takahashi T., Ueda R., Ransohoff J., Oettgen H. F., Old L. J. Serological analysis of cell surface antigens of malignant human brain tumors. Proc. Natl Acad. Sci. USA. 75:1978;5122-5126.
53. Stillman B. Cell cycle control of DNA replication. Science. 274:1996;1659-1664.
54. Suen K., Bustelo X. R., Barbacid M. Lack of evidence for the activation of ras/raf mitogenic pathway by 14-3-3 proteins in mammalian cells. Oncogene. 11:1995;825-831.
55. Swanson K. D., Dhar M. S., Joshi J. G. The human and bovine 14-3-3 eta protein mRNAs are highly conserved in both their translated and untranslated regions. Biochim. Biophys. Acta. 1216:1993;145-148.
56. Taira T., Iguchi-Ariga S. M. M., Ariga H. A novel DNA replication origin identified in the human heat shock protein 70 gene promoter. Mol. Cell. Biol. 14:1994;6386-6387.
57. Vassilev L., Johnson E. M. An initiation zone of chromosomal DNA replication located upstream ofc-myc. Mol. Cell. Biol. 10:1990;4899-4904.
58. Vassilev L., Russev G. Purification of nascent DNA chains by immunoprecipitation with anti-BrdU antibodies. Nucl. Acids Res. 21:1988;10397.
59. Vassilev L., Burhans W. C., DePamphilis M. L. Mapping an origin of DNA replication at a single-copy locus in exponentially proliferating mammalian cells. Mol. Cell. Biol. 10:1990;4685-4689.
60. Walter J., Newport J. W. Regulation of replicon size inXenopus. Science. 275:1997;993-995.
61. Waltz S. E., Trivedi A. A., Leffak M. DNA replication initiates non-randomly at multiple sites near thec-myc. Nucl. Acids Res. 24:1996;1887-1894.
62. Wu C., Friedlander P., Lamoureux C., Zannis-Hadjopoulos M., Price G. B. cDNA clones contain autonomous replication activity. Biochim. Biophys. Acta. 1174:1993a;241-257.
63. Wu C., Zannis-Hadjopoulos M., Price G. B. In vivo. Biochim. Biophys. Acta. 1174:1993b;258-266.
64. Zannis-Hadjopoulos M., Persico M., Martin R. G. The remarkable instability of replication loops provides a general method for the isolation of origins of cDNA replication. Cell. 27:1981;155-163.
65. Zannis-Hadjopoulos M., Kaufmann G., Martin R. G. Mammalian DNA enriched for replication origins is enriched for snap-back sequences. J. Mol. Biol. 179:1984;577-586.
66. Zimmerman K., Mannhalter W. Technical aspects of quantitative competitive. PCR. BioTechniques. 21:1996;268-279.