Flexible docking of a ligand peptide to a receptor protein by multicanonical molecular dynamics simulation

Chemical Physics Letters

Volumn 278, Issue 4-6, 1997, Pages 297-301

  Nakajima, Nobuyuki ^a   Higo, Junichi ^a   Kidera, Akinori ^b   Nakamura, Haruki ^a  

^a BIOMOL ENG RESEARCH INSTITUTE   (Japan)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0031592919     PISSN: 00092614     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0009-2614(97)01074-9     Document Type: Article

References (19)

1. I.D. Kuntz, J.M. Blaney, S.J. Oatley, R. Langridge, T.E. Ferrin, J. Mol. Biol. 161 (1982) 269.
2. A.R. Leach, J. Mol. Biol. 235 (1994) 345.
3. R. Rosenfeld, S. Vajda, C. DeLisi, Annu. Rev. Biophys. Biomol. Struct. 24 (1995) 677.
4. T. Lengauer, M. Rarey, Curr. Opin. Struct. Biol. 6 (1996) 402.
5. N. Nakajima, H. Nakamura, A. Kidera, J. Phys. Chem. B 101 (1997) 817.
6. B.A. Berg, T. Neuhaus, Phys. Lett. B 267 (1991) 249.
7. U.H.E. Hansmann, Y. Okamoto, J. Comput. Chem. 14 (1993) 1333.
8. A. Kidera, Proc. Natl. Acad. Sci. USA 92 (1995) 9886.
9. U.H.E. Hansmann, Y. Okamoto, F. Eisenmenger, Chem. Phys. Lett. 259 (1996) 321.
10. H. Yu, J.K. Chen, S. Feng, D.C. Dalgarno, A.W. Brauer, S.L. Schreiber, Cell 76 (1994) 933.
11. A. Musacchio, M. Saraste, M. Wilmanns, Nature Struct. Biol. 1 (1994) 546.
12. S. Feng, J.K. Chen, H. Yu, J.A. Simon, S.L. Schreiber, Science 266 (1994) 1241.
13. W, Xu, S.C. Harrison, M.J. Eck, Nature (London) 385 (1997) 595.
14. F. Sicheri, I. Moarefi, J. Kuriyan, Nature (London) 385 (1997) 602.
15. W.G. Hoover, A.J.C. Ladd, B. Moran, Phys. Rev. Lett. 48 (1982) 1818.
16. D.J. Evans, G.P. Morriss, Phys. Lett. A 98 (1983) 433.
17. K. Morikami, T. Nakai, A. Kidera, M. Saito, H. Nakamura, Comput. Chem. 16 (1992) 243.
18. S.J. Weiner, P.A. Kollman, D.T. Nguyen, D.A. Case, J. Comput. Chem. 7 (1986) 230.
19. W.A. Lim, F.M. Richards, R.O. Fox, Nature (London) 372 (1994) 375.