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Membrane heredity, symbiogenesis, and the multiple origins of algae
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R. Arai, M. Kato, Doi Y. Tokyo: National Science Museum
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Cavalier-Smith T. Membrane heredity, symbiogenesis, and the multiple origins of algae. Arai R, Kato M, Doi Y. Biodiversity and Evolution. 1995;75-114 National Science Museum, Tokyo.
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Biodiversity and Evolution
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Cavalier-Smith, T.1
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Second-hand chloroplasts and the case of the disappearing nucleus
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of outstanding interest. This poignant review slots the results of nucleomorph research into the broader context of eukaryotic cell evolution, namely in the methods employed by eukaryotes to acquire the power of photosynthesis by the endosymbiosis of cyanobacteria and eukaryotic algae. The review also describes recent advances in phylogenetic techniques used to resolve the evolution of rapidly evolving eukaryotic genomes.
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Palmer JD, Delwiche CF. Second-hand chloroplasts and the case of the disappearing nucleus. of outstanding interest Proc Natl Acad Sci USA. 93:1996;7432-7435 This poignant review slots the results of nucleomorph research into the broader context of eukaryotic cell evolution, namely in the methods employed by eukaryotes to acquire the power of photosynthesis by the endosymbiosis of cyanobacteria and eukaryotic algae. The review also describes recent advances in phylogenetic techniques used to resolve the evolution of rapidly evolving eukaryotic genomes.
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(1996)
Proc Natl Acad Sci USA
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Palmer, J.D.1
Delwiche, C.F.2
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The phylogeny of plastids: A review based on comparison of small-subunit ribosomal RNA coding regions
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Bhattacharya D, Medlin L. The phylogeny of plastids: a review based on comparison of small-subunit ribosomal RNA coding regions. J Phycol. 31:1995;489-498.
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J Phycol
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Bhattacharya, D.1
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Molecular biology of rhodophyte and chromophyte plastids
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Reith M. Molecular biology of rhodophyte and chromophyte plastids. Annu Rev Plant Physiol Plant Mol Biol. 46:1995;459-575.
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Annu Rev Plant Physiol Plant Mol Biol
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Reith, M.1
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Something borrowed, something green: Lateral transfer of chloroplasts by secondary endosymbiosis
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McFadden GI, Gilson PR. Something borrowed, something green: lateral transfer of chloroplasts by secondary endosymbiosis. Trends Ecol Evol. 10:1995;12-17.
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Trends Ecol Evol
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McFadden, G.I.1
Gilson, P.R.2
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8
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0030460486
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Biodiversity, genomes and DNA sequence databases
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of special interest. This is a timely review which serves to remind us that the species sampled within the molecular sequence databases are highly biased towards relatively few species. Most molecular data recorded - for example, from humans and other mammals - only cover a narrow window of the evolutionary spectrum. Recently, however, the number of database entries derived from ancient eukaryotic groups, bacteria, and archaea have been growing rapidly - no doubt aided by the initiation of several new genome projects of these organisms.
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Liepe D. Biodiversity, genomes and DNA sequence databases. of special interest Curr Opin Genet Dev. 6:1996;686-691 This is a timely review which serves to remind us that the species sampled within the molecular sequence databases are highly biased towards relatively few species. Most molecular data recorded - for example, from humans and other mammals - only cover a narrow window of the evolutionary spectrum. Recently, however, the number of database entries derived from ancient eukaryotic groups, bacteria, and archaea have been growing rapidly - no doubt aided by the initiation of several new genome projects of these organisms.
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(1996)
Curr Opin Genet Dev
, vol.6
, pp. 686-691
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Liepe, D.1
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9
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0031021028
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Bonsai genomics: Sequencing the smallest eukaryotic genomes
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of special interest. The establishment of projects to sequence the nucleomorph genomes of two eukaryotic algae is described in this review along with some recent molecular data generated from these projects.
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McFadden GI, Gilson PR, Douglas SE, Cavalier-Smith T, Hofmann CJB, Maier U-G. Bonsai genomics: sequencing the smallest eukaryotic genomes. of special interest Trends Genet. 13:1997;46-49 The establishment of projects to sequence the nucleomorph genomes of two eukaryotic algae is described in this review along with some recent molecular data generated from these projects.
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(1997)
Trends Genet
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, pp. 46-49
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McFadden, G.I.1
Gilson, P.R.2
Douglas, S.E.3
Cavalier-Smith, T.4
Hofmann, C.J.B.5
Maier, U.-G.6
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10
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0026423881
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Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes
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Douglas SE, Murphy CA, Spencer DF, Gray MW. Cryptomonad algae are evolutionary chimaeras of two phylogenetically distinct unicellular eukaryotes. Nature. 350:1991;148-151.
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Nature
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Douglas, S.E.1
Murphy, C.A.2
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Gray, M.W.4
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11
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0028086698
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Goniomonas: RRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads
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McFadden GI, Gilson PR, Hill DRA. Goniomonas: rRNA sequences indicate that this phagotrophic flagellate is a close relative of the host component of cryptomonads. Eur J Phycol. 29:1994;29-32.
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Eur J Phycol
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McFadden, G.I.1
Gilson, P.R.2
Hill, D.R.A.3
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12
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0029798360
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Substitution rate calibration of small subunit rRNA identifies chlorarachniophyte endosymbionts as remnants of green algae
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of special interest. The rapidly evolving highly divergent gene sequences of some eukaryotes have long confounded standard phylogenetic methods. The authors of this paper describe two recent methodological advances in phylogenetic analysis and successfully apply them to resolve the origin of chlorarachniophyte endosymbionts.
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Van de Peer Y, Rensing SA, Maier U-G, deWachter R. Substitution rate calibration of small subunit rRNA identifies chlorarachniophyte endosymbionts as remnants of green algae. of special interest Proc Natl Acad Sci USA. 93:1996;7732-7736 The rapidly evolving highly divergent gene sequences of some eukaryotes have long confounded standard phylogenetic methods. The authors of this paper describe two recent methodological advances in phylogenetic analysis and successfully apply them to resolve the origin of chlorarachniophyte endosymbionts.
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(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 7732-7736
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Van De Peer, Y.1
Rensing, S.A.2
Maier, U.-G.3
Dewachter, R.4
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13
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0002394924
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Cryptomonad nuclear and nucleomorph 18S rRNA phylogeny
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of special interest. For phycological buffs only; the authors of this paper take all known cryptomonad ribosomal RNA gene sequences and try to reconstruct some of the major evolutionary events that have influenced the creation of modern cryptomonads.
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Cavalier-Smith T, Couch JA, Thorsteinsen KE, Gilson PR, Deane JA, Hill DRA, McFadden GI. Cryptomonad nuclear and nucleomorph 18S rRNA phylogeny. of special interest Eur J Phycol. 31:1996;315-328 For phycological buffs only; the authors of this paper take all known cryptomonad ribosomal RNA gene sequences and try to reconstruct some of the major evolutionary events that have influenced the creation of modern cryptomonads.
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(1996)
Eur J Phycol
, vol.31
, pp. 315-328
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Cavalier-Smith, T.1
Couch, J.A.2
Thorsteinsen, K.E.3
Gilson, P.R.4
Deane, J.A.5
Hill, D.R.A.6
McFadden, G.I.7
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14
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0029105272
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Molecular evolutionary analysis of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphidae and the Chlorarachniophyta
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Bhattacharya D, Helmchen T, Melkonian M. Molecular evolutionary analysis of nuclear-encoded small subunit ribosomal RNA identify an independent rhizopod lineage containing the Euglyphidae and the Chlorarachniophyta. J Eukaryotic Microbiol. 42:1995;65-69.
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J Eukaryotic Microbiol
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Bhattacharya, D.1
Helmchen, T.2
Melkonian, M.3
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Isolation and preliminary characterization of the nucleus and the nucleomorph of a cryptomonad, Pyrenomonas salina
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Hansmann P, Eschbach S. Isolation and preliminary characterization of the nucleus and the nucleomorph of a cryptomonad, Pyrenomonas salina. Eur J Cell Biol. 52:1990;373-378.
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Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads
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Maier U-G, Hofmann C, Eschbach S, Wolters J, Igloi G. Demonstration of nucleomorph-encoded eukaryotic small subunit ribosomal RNA in cryptomonads. Mol Gen Genet. 230:1991;155-160.
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Mol Gen Genet
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Maier, U.-G.1
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Eschbach, S.3
Wolters, J.4
Igloi, G.5
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17
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0028268950
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The photosynthetic endosymbiont in cryptomonad cells produces both chloroplast and cytoplasmic-type ribosomes
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McFadden GI, Gilson PR, Douglas SE. The photosynthetic endosymbiont in cryptomonad cells produces both chloroplast and cytoplasmic-type ribosomes. J Cell Sci. 107:1994;649-657.
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J Cell Sci
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McFadden, G.I.1
Gilson, P.R.2
Douglas, S.E.3
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18
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0028231760
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Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga
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McFadden GI, Gilson PR, Hofmann CJ, Adcock GJ, Maier U-G. Evidence that an amoeba acquired a chloroplast by retaining part of an engulfed eukaryotic alga. Proc Natl Acad Sci USA. 91:1994;3690-3694.
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Proc Natl Acad Sci USA
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McFadden, G.I.1
Gilson, P.R.2
Hofmann, C.J.3
Adcock, G.J.4
Maier, U.-G.5
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19
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0028170971
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The presence of a nucleomorph hsp70 is a common feature of Cryptophyta and Chlorarachniophyta
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Rensing SA, Goddemeier M, Hofmann CJB, Maier U-G. The presence of a nucleomorph hsp70 is a common feature of Cryptophyta and Chlorarachniophyta. Curr Genet. 26:1994;451-455.
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Curr Genet
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Rensing, S.A.1
Goddemeier, M.2
Hofmann, C.J.B.3
Maier, U.-G.4
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20
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0031081427
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Good things in small packages: The tiny genomes of chlorarachniophyte endosymbionts
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of special interest. This is a highly colourful review, with lots of pretty pictures, that summarizes the history of chlorarachniophyte endosymbiont research and provides a molecular update of the nucleomorph genome sequencing project.
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Gilson PR, McFadden GI. Good things in small packages: the tiny genomes of chlorarachniophyte endosymbionts. of special interest Bioessays. 19:1997;167-173 This is a highly colourful review, with lots of pretty pictures, that summarizes the history of chlorarachniophyte endosymbiont research and provides a molecular update of the nucleomorph genome sequencing project.
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(1997)
Bioessays
, vol.19
, pp. 167-173
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Gilson, P.R.1
McFadden, G.I.2
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21
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0029798510
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The miniaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are contranscribed, and the smallest known spliceosomal introns
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of outstanding interest. This is the first detailed paper that lists some of the molecular data emerging from the efforts to sequence the nucleomorph genome of chlorarachniophyte algae. In addition to simple gene data, we describe the highly parsimonious DNA usage employed by these miniaturised genomes such as overlapping and co-transcribed genes and the reduction of spliceosomal introns to the smallest size found within any eukaryote.
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Gilson PR, McFadden GI. The miniaturized nuclear genome of a eukaryotic endosymbiont contains genes that overlap, genes that are contranscribed, and the smallest known spliceosomal introns. of outstanding interest Proc Natl Acad Sci USA. 93:1996;7737-7742 This is the first detailed paper that lists some of the molecular data emerging from the efforts to sequence the nucleomorph genome of chlorarachniophyte algae. In addition to simple gene data, we describe the highly parsimonious DNA usage employed by these miniaturised genomes such as overlapping and co-transcribed genes and the reduction of spliceosomal introns to the smallest size found within any eukaryote.
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(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 7737-7742
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Gilson, P.R.1
McFadden, G.I.2
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Cereal genome evolution: Pastoral pursuits with 'Lego' genomes
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Moore G. Cereal genome evolution: pastoral pursuits with 'Lego' genomes. Curr Opin Genet Dev. 5:1995;717-724.
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Science
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Crosland, M.1
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25
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The smallest known eukaryotic genomes encode a protein gene: Towards an understanding of nucleomorph functions
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Hofmann CJ, Rensing SA, Hauber MM, Martin WF, Muller SB, Couch J, McFadden GI, Igloi GL, Maier UG. The smallest known eukaryotic genomes encode a protein gene: towards an understanding of nucleomorph functions. Mol Gen Genet. 243:1994;600-604.
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Hofmann, C.J.1
Rensing, S.A.2
Hauber, M.M.3
Martin, W.F.4
Muller, S.B.5
Couch, J.6
McFadden, G.I.7
Igloi, G.L.8
Maier, U.G.9
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26
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0031018799
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Evolutionary origin of cryptomonad microalgae: Two novel GAPDH genes as potential markers of ancestral endosymbiont and host cell components
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of special interest. A description of nuclear genes encoding GAPDH proteins targeted into the cryptomonad plastid. Amino-terminal leaders comprising a signal peptide followed by a putative transit peptide similar to that found in red alga are identified. The signal peptide may direct co-insertional translation of the host cell synthesised protein to the ER. The protein migrates through the ER and, by an as yet undetermined mechanism, is transported into the endosymbiont's cytoplasm. The transit peptide component of the amino-terminal leader possibly directs the import of the protein into the plastid.
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Liaud M-F, Brandt U, Scherzinger M, Cerff R. Evolutionary origin of cryptomonad microalgae: two novel GAPDH genes as potential markers of ancestral endosymbiont and host cell components. of special interest J Mol Evol. 44:1997;S28-S37 A description of nuclear genes encoding GAPDH proteins targeted into the cryptomonad plastid. Amino-terminal leaders comprising a signal peptide followed by a putative transit peptide similar to that found in red alga are identified. The signal peptide may direct co-insertional translation of the host cell synthesised protein to the ER. The protein migrates through the ER and, by an as yet undetermined mechanism, is transported into the endosymbiont's cytoplasm. The transit peptide component of the amino-terminal leader possibly directs the import of the protein into the plastid.
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(1997)
J Mol Evol
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Liaud, M.-F.1
Brandt, U.2
Scherzinger, M.3
Cerff, R.4
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What's eating Eu? The role of eukaryote/eukaryote endosymbioses in plastid origins
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McFadden GI, Gilson PR. What's eating Eu? The role of eukaryote/eukaryote endosymbioses in plastid origins. in press Endocyt Cell Res. 1997.
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Gilson, P.R.2
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The chlorarachniophyte: A cell with two different nuclei and two different telomeres
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Accelerated evolution and Muller's rachet in endosymbiotic bacteria
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of special interest. The genomic parallels between nucleomorphs and the organellar genomes of mitochondria and chloroplasts are remarkable, with compact gene arrangements, biased nucleotide compositions and accelerated evolutionary rates featuring prominently. We can now add Buchnera spp. to this list for this paper shows that the AT-rich genomes of these bacterial endosymbionts of aphids are evolving far more rapidly than their free-living relatives.
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Moran NA. Accelerated evolution and Muller's rachet in endosymbiotic bacteria. of special interest Proc Natl Acad Sci USA. 93:1996;2873-2878 The genomic parallels between nucleomorphs and the organellar genomes of mitochondria and chloroplasts are remarkable, with compact gene arrangements, biased nucleotide compositions and accelerated evolutionary rates featuring prominently. We can now add Buchnera spp. to this list for this paper shows that the AT-rich genomes of these bacterial endosymbionts of aphids are evolving far more rapidly than their free-living relatives.
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(1996)
Proc Natl Acad Sci USA
, vol.93
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Moran, N.A.1
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The marine red alaga Condrus crispus has a highly divergent β-tubulin gene with a characteristic 5′ intron: Functional and evolutionary implications
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Liaud M-F, Brandt U, Cerff R. The marine red alaga Condrus crispus has a highly divergent β-tubulin gene with a characteristic 5′ intron: functional and evolutionary implications. Plant Mol Biol. 28:1995;313-325.
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Plant Mol Biol
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40
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Organelle genomes: Going, going, gone!
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of outstanding interest. Commentary on the pervasive trend for transfer of genes from organelle genomes such as mitochondria, plastids, and nucleomorphs into the host nucleus. The author evaluates the emerging evidence suggesting that the trichomonad hydrogenosome is a modified mitochondrion which lacks a genome.
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Palmer J. Organelle genomes: going, going, gone! of outstanding interest Science. 275:1997;790-791 Commentary on the pervasive trend for transfer of genes from organelle genomes such as mitochondria, plastids, and nucleomorphs into the host nucleus. The author evaluates the emerging evidence suggesting that the trichomonad hydrogenosome is a modified mitochondrion which lacks a genome.
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Science
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Palmer, J.1
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Complete genome sequences of cellular life forms: Glipmses of theoretical evolutionary genomics
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of special interest. As the list of completed genomes grows, comparative genomic analysis will provide a powerful means of understanding genome evolution and the diversification of lifeforms. This review provides a stimulating comparison between the two recently completed bacterial genomes and S. cerevisiae, the only fully sequenced eukaryote to date.
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Koonin E, Mushegian A. Complete genome sequences of cellular life forms: glipmses of theoretical evolutionary genomics. of special interest Curr Opin Genet Dev. 6:1996;757-762 As the list of completed genomes grows, comparative genomic analysis will provide a powerful means of understanding genome evolution and the diversification of lifeforms. This review provides a stimulating comparison between the two recently completed bacterial genomes and S. cerevisiae, the only fully sequenced eukaryote to date.
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(1996)
Curr Opin Genet Dev
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, pp. 757-762
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Koonin, E.1
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Itaya, M.1
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of special interest. A "News and views" piece comparing the residues in different mitochondrial genomes. This is a powerful advocacy of comparative genomics for defining principles and trends in intracellular gene transfer.
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Palmer J. The mitochondrion that time forgot. of special interest Nature. 387:1997;454-455 A "News and views" piece comparing the residues in different mitochondrial genomes. This is a powerful advocacy of comparative genomics for defining principles and trends in intracellular gene transfer.
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(1997)
Nature
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Palmer, J.1
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44
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0031007907
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An ancestral mitochondrial DNA resembling a eubacterial genome in miniature
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of special interest. The complete mitochondrial DNA sequence from a flagellate protist; this unusual mitochondrion harbours more genes than any characterised to date. Relics from its bacterial ancestry include eubacterial-type RNA polymerase, eubacterial-type translation factors, conservation of ancient operon structure, and Shine-Dalgarno sequences on the mRNAs.
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