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Volumn 14, Issue 5, 1997, Pages 527-536

Detection of convergent and parallel evolution at the amino acid sequence level

Author keywords

adaptive evolution; amino acid sequence; ancestral sequence; convergent evolution; lysozyme; parallel evolution

Indexed keywords

LYSOZYME;

EID: 0030957216     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025789     Document Type: Article
Times cited : (222)

References (28)
  • 2
    • 0028172520 scopus 로고
    • Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene
    • CAO, Y., J. ADACHI, A. JANKE, S. PÄÄBO, and M. HASEGAWA. 1994. Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: instability of a tree based on a single gene. J. Mol. Evol. 39:519-527.
    • (1994) J. Mol. Evol. , vol.39 , pp. 519-527
    • Cao, Y.1    Adachi, J.2    Janke, A.3    Pääbo, S.4    Hasegawa, M.5
  • 3
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • M. O. DAYHOFF, ed. National Biomedical Research Foundation, Washington, DC.
    • DAYHOFF, M. O., R. M. SCHWARTZ, and B. C. ORCUTT. 1978. A model of evolutionary change in proteins. Pp. 345-352 in M. O. DAYHOFF, ed. Atlas of protein sequence and structure. Vol. 5, Suppl. 3. National Biomedical Research Foundation, Washington, DC.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.3 SUPPL. , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 4
    • 0021285423 scopus 로고
    • Stomach lysozymes of ruminants. I. Distribution and catalytic properties
    • DOBSON, D. E., E. M. PRAGER, and A. C. WILSON. 1984. Stomach lysozymes of ruminants. I. Distribution and catalytic properties. J. Biol. Chem. 259:11607-11616.
    • (1984) J. Biol. Chem. , vol.259 , pp. 11607-11616
    • Dobson, D.E.1    Prager, E.M.2    Wilson, A.C.3
  • 5
    • 0027983037 scopus 로고
    • Convergent evolution: The need to be explicit
    • DOOLITTLE, R. F. 1994. Convergent evolution: the need to be explicit. Trends Biochem. Sci. 19:15-18.
    • (1994) Trends Biochem. Sci. , vol.19 , pp. 15-18
    • Doolittle, R.F.1
  • 7
    • 0027423317 scopus 로고
    • Simple diagnostic statistical tests of models for DNA substitution
    • GOLDMAN, N. 1993. Simple diagnostic statistical tests of models for DNA substitution. J. Mol. Evol. 37:650-661.
    • (1993) J. Mol. Evol. , vol.37 , pp. 650-661
    • Goldman, N.1
  • 8
    • 0002329356 scopus 로고
    • Minimum evolution fits to a given tree
    • HARTIGAN, J. A. 1973. Minimum evolution fits to a given tree. Biometrics 29:53-65.
    • (1973) Biometrics , vol.29 , pp. 53-65
    • Hartigan, J.A.1
  • 9
    • 0025261112 scopus 로고
    • Concerted evolution of ruminant lysozymes: Characterization of lysozyme cDNA clones from sheep and deer
    • IRWIN, D. W., and A. C. WILSON. 1990. Concerted evolution of ruminant lysozymes: characterization of lysozyme cDNA clones from sheep and deer. J. Biol. Chem. 265:4944-4952.
    • (1990) J. Biol. Chem. , vol.265 , pp. 4944-4952
    • Irwin, D.W.1    Wilson, A.C.2
  • 10
    • 0025098020 scopus 로고
    • Purification, amino acid sequence, and some properties of rabbit kidney lysozyme
    • ITO, Y., H. YAMADA, S. NAKAMURA, and T. IMOTO. 1990. Purification, amino acid sequence, and some properties of rabbit kidney lysozyme. J. Biochem. 107:236-241.
    • (1990) J. Biochem. , vol.107 , pp. 236-241
    • Ito, Y.1    Yamada, H.2    Nakamura, S.3    Imoto, T.4
  • 12
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • JONES, D. T., W. R. TAYLOR, and J. M. THORNTON. 1992. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:275-282.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 13
    • 0029891697 scopus 로고    scopus 로고
    • Molecular genetics and evolution of stomach and nonstomach lysozymes in the hoatzin
    • KORNEGAY, J. R. 1996. Molecular genetics and evolution of stomach and nonstomach lysozymes in the hoatzin. J. Mol. Evol. 42:676-684.
    • (1996) J. Mol. Evol. , vol.42 , pp. 676-684
    • Kornegay, J.R.1
  • 14
    • 0028046864 scopus 로고
    • Molecular adaptation of a leaf-eating bird: Stomach lysozyme of the hoatzin
    • KORNEGAY, J. R., J. W. SCHILLING, and A. C. WILSON. 1994. Molecular adaptation of a leaf-eating bird: stomach lysozyme of the hoatzin. Mol. Biol. Evol. 11:921-928.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 921-928
    • Kornegay, J.R.1    Schilling, J.W.2    Wilson, A.C.3
  • 15
    • 0029200909 scopus 로고
    • Molecular evidence for natural selection
    • KREITMAN, M., and H. AKASHI. 1995. Molecular evidence for natural selection. Annu. Rev. Ecol. Syst. 26:403-422.
    • (1995) Annu. Rev. Ecol. Syst. , vol.26 , pp. 403-422
    • Kreitman, M.1    Akashi, H.2
  • 17
    • 0028922906 scopus 로고
    • Testing the covarion hypothesis of molecular evolution
    • MIYAMOTO, M. M., and W. M. FITCH. 1995. Testing the covarion hypothesis of molecular evolution. Mol. Biol. Evol. 12:503-513.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 503-513
    • Miyamoto, M.M.1    Fitch, W.M.2
  • 18
    • 0040211287 scopus 로고
    • DNA polymorphism and adaptive evolution
    • A. H. D. BROWN, T. CLEGG, A. L. KAHLER, and B. S. WEIR, eds. Sinauer, Sunderland, Mass.
    • NEI, M. 1990. DNA polymorphism and adaptive evolution. Pp. 128-142 in A. H. D. BROWN, T. CLEGG, A. L. KAHLER, and B. S. WEIR, eds. Plant population genetics, breeding, and genetic resources. Sinauer, Sunderland, Mass.
    • (1990) Plant Population Genetics, Breeding, and Genetic Resources , pp. 128-142
    • Nei, M.1
  • 19
    • 0030458552 scopus 로고    scopus 로고
    • Phylogenetic analysis in molecular evolutionary genetics
    • _. 1996. Phylogenetic analysis in molecular evolutionary genetics. Annu. Rev. Genet. 30:371-403.
    • (1996) Annu. Rev. Genet. , vol.30 , pp. 371-403
  • 20
    • 0028338820 scopus 로고
    • Estimating the number of amino acid substitutions per site when the substitution rate varies among sites
    • OTA, T., and M. NEI. 1994. Estimating the number of amino acid substitutions per site when the substitution rate varies among sites. J. Mol. Evol. 38:642-643.
    • (1994) J. Mol. Evol. , vol.38 , pp. 642-643
    • Ota, T.1    Nei, M.2
  • 21
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for econstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for econstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 22
    • 0023666025 scopus 로고
    • Adaptive evolution in the lysozymes of foregut fermenters
    • STEWART, C.-B., J. W. SCHILLING, and A. C. WILSON. 1987. Adaptive evolution in the lysozymes of foregut fermenters. Nature 330:401-404.
    • (1987) Nature , vol.330 , pp. 401-404
    • Stewart, C.-B.1    Schilling, J.W.2    Wilson, A.C.3
  • 23
    • 0026325886 scopus 로고
    • Stomach lysozyme gene of the langur monkey: Tests for convergence and positive selection
    • SWANSON, K. W., D. M. IRWIN, and A. C. WILSON. 1991. Stomach lysozyme gene of the langur monkey: tests for convergence and positive selection. J. Mol. Evol. 33-418-425.
    • (1991) J. Mol. Evol. , vol.33 , pp. 418-425
    • Swanson, K.W.1    Irwin, D.M.2    Wilson, A.C.3
  • 24
    • 0029981621 scopus 로고    scopus 로고
    • Excessive homoplasy in an evolutionarily constrained protein
    • WELL, R. S. 1996. Excessive homoplasy in an evolutionarily constrained protein. Proc. R. Soc. Lond. B 263:393-400.
    • (1996) Proc. R. Soc. Lond. B , vol.263 , pp. 393-400
    • Well, R.S.1
  • 25
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analysis
    • YANG, Z. 1996. Among-site rate variation and its impact on phylogenetic analysis. Trends Ecol. Evol. 11:367-372.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 367-372
    • Yang, Z.1
  • 26
    • 0029892459 scopus 로고    scopus 로고
    • Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites
    • YANG, Z., and S. KUMAR. 1996. Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites. Mol. Biol. Evol. 13: 650-659.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 650-659
    • Yang, Z.1    Kumar, S.2
  • 27
    • 0028820333 scopus 로고
    • A new method of inference of ancestral nucleotide and amino acid sequences
    • YANG, Z., S. KUMAR, and M. NEI. 1995. A new method of inference of ancestral nucleotide and amino acid sequences Genetics 141:1641-1650.
    • (1995) Genetics , vol.141 , pp. 1641-1650
    • Yang, Z.1    Kumar, S.2    Nei, M.3
  • 28
    • 0031025677 scopus 로고    scopus 로고
    • Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods
    • in press
    • ZHANG, J., and M. NEI. 1997. Accuracies of ancestral amino acid sequences inferred by the parsimony, likelihood, and distance methods. J. Mol. Evol. (in press).
    • (1997) J. Mol. Evol.
    • Zhang, J.1    Nei, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.