Transcription elongation factor S-II is not required for transcription-coupled repair in yeast

Molecular and General Genetics

Volumn 254, Issue 3, 1997, Pages 284-290

  Verhage, R A ^a   Heyn, J ^a   Van De Putte, P ^a   Brouwer, J ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Nucleotide excision repair; RAD26; Saccharomyces cerevisiae; Transcription elongation factor S II (TFIIS); Transcription coupled repair

Indexed keywords

CYCLOBUTANE; ELONGATION FACTOR; PYRIMIDINE DIMER; TRANSCRIPTION FACTOR;

ARTICLE; EXCISION REPAIR; GENETIC TRANSCRIPTION; NONHUMAN; PRIORITY JOURNAL; RADIATION MUTAGENESIS; SACCHAROMYCES CEREVISIAE; ULTRAVIOLET RADIATION; YEAST;

DNA REPAIR; DNA, FUNGAL; GENE EXPRESSION REGULATION, FUNGAL; GENOME, FUNGAL; SACCHAROMYCES CEREVISIAE; TRANSCRIPTION FACTORS; TRANSCRIPTION FACTORS, GENERAL; TRANSCRIPTION, GENETIC; TRANSCRIPTIONAL ELONGATION FACTORS;

EID: 0030945450     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050417     Document Type: Article

References (54)

1. Archambault J, Lacroute F, Ruet A, Friesen JD (1992) Genetic interaction between transcription elongation factor TFIIS and RNA polymerase II. Mol Cell Biol 12:4142-4152
2. Bhatia PK, Verhage RA, Brouwer J, Friedberg EC (1996) Molecular cloning and characterization of S. cerevisiae RAD28: the yeast homolog of the human Cockayne syndrome A (CSA) gene. J Bacteriol, 178:5977-5988
3. Bohr VA, Smith CA, Okumoto DS, Hanawalt PC (1985) DNA repair in an active gene: removal of pyrimidine dimers from the DHFR gene of CHO cells is much more efficient than in the genome overall. Cell 40:359-369
4. Christie KR, Awrey DE, Edwards AM, Kane CM (1994) Purified yeast RNA polymerase II reads through intrinsic blocks to elongation in response to the yeast TFIIS analogue, P37. J Biol Chem 269:936-943
5. Cipres-Palacin G, Kane CM (1994) Cleavage of the nascent transcript induced by TFIIS in insufficient to promote read-through of intrinsic blocks to elongation by RNA polymerase II. Proc Natl Acad Sci USA 91:8087-8091
6. Clark AB, Dykstra CC, Sugino A (1991) Isolation, DNA sequence, and regulation of a Saccharomyces cerevisiae gene that encodes DNA strand transfer protein α. Mol Cell Biol 11:2576-2582
7. Donahue BA, Yin S, Taylor J-S, Reines D, Hanawalt PC (1994) Transcript cleavage by RNA polymerase II arrested by a cyclobutane pyrimidine dimer in the DNA template. Proc Natl Acad Sci USA 91:8502-8506
8. Drapkin R, Reardon JT, Ansari A, Huang J-C, Zawel L, Ahn K, Sancar A, Reinberg D (1994) Dual role of TFIIH in DNA excision repair and in transcription by RNA polymerase II. Nature 368:769-772
9. Exinger F, Lacroute F (1992) 6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae. Curr Genet 22:9-11
10. Feaver WJ, Svejstrup JQ, Bardwell L, Bardwell AJ, Buratowski S, Gulyas K, Donahue TF, Friedberg EC, Kornberg RD (1993) Dual roles of a multiprotein complex from S. cerevisiae in transcription and DNA repair. Cell 75:1379-1387
11. Friedberg EC, Walker GC, Siede W (1995) DNA repair and mutagenesis. American Society of Microbiology Press, Washington, DC
12. Gu W, Reines D (1995) Identification of a decay in transcription potential that results in elongation factor dependence of RNA polymerase II. J Biol Chem 270:11238-11244
13. Gu W, Powell W, Mote Jr J, Reines D (1993) Nascent RNA cleavage by arrested RNA polymerase II does not require upstream translocation of the elongation complex on DNA. J Biol Chem 268:25604-25616
14. Hanawalt PC (1994) Transcription-coupled repair and human disease. Science 266:1957-1958
15. Hanawalt PC (1995) DNA repair comes of age. Mutat Res 336:101-113
16. Hanawalt PC, Donahue BA, Sweder KS (1994) Collision or collusion? Curr Biol 4:518-521
17. Henning KA, Li L, Iyer N, McDaniel LD, Reagan MS, Legerski R, Schultz RA, Stefanini M, Lehmann AR, Mayne LV, Friedberg EC (1995) The Cockayne syndrome group A gene encodes a WD repeat protein that interacts with CSB protein and a subunit of RNA polymerase II TFIIH. Cell 82:555-564
18. Hubert J-C, Guyonvarch A, Kammerer B, Exinger F, Liljelund P, Lacroute F (1983) Complete sequence of a eukaryotic regulatory gene. EMBO J 2:2071-2073
19. Izban MG, Luse DS (1992) The RNA polymerase II ternary complex cleaves the nascent transcript in a 3′→5′ direction in the presence of elongation factor SII. Genes Dev 6:1342-1356
20. Kassavetis GA, Geiduschek EP (1993) RNA polymerase marching backward. Science 259:944-945
21. Kerppola TK, Kane CM (1990) Analysis of the signals for transcription termination by purified RNA polymerase II. Biochemistry 29:269-278
22. Leadon SA, Cooper PK (1993) Preferential repair of ionizing radiation-induced damage in the transcribed strand of an active human gene is defective in Cockayne syndrome. Proc Natl Acad Sci USA 90:10499-10503
23. Leadon SA, Lawrence DA (1992) Strand-selective repair of DNA damage in the yeast GAL7 gene requires RNA polymerase II. J Biol Chem 267:23175-23182
24. Mellon I, Champe GN (1996) Products of DNA mismatch repair genes mutS and mutL are required for transcription-coupled nucleotide-excision repair of the lactose operon in Escherichia coli. Proc Natl Acad Sci USA 93:1292-1297
25. Mellon I, Hanawalt PC (1989) Induction of the Escherichia coli lactose operon selectively increases repair of its transcribed DNA strand. Nature 342:95-98
26. Mellon I, Spivak GS, Hanawalt PC (1987) Selective removal of transcription blocking DNA damage from the transcribed strand of the mammalian DHFR gene. Cell 51:241-249
27. Mellon I, Rajpal DK, Koi M, Boland CR, Champe GN (1996) Transcription-coupled repair deficiency and mutations in human mismatch repair genes. Science 272:557-560
28. Nakanishi T, Nakano A, Nomura K, Sekimizu K, Natori S (1992) Purification, gene cloning, and gene disruption of the transcription elongation factor S-II in Saccharomyces cerevisiae. J Biol Chem 267:13200-13204
29. Nakanishi T, Shimoaraiso M, Kubo T, Natori S (1995) Structure-function relationship of yeast S-II in terms of stimulation of RNA polymerase II, arrest relief, and suppression of 6-azauracil sensitivity. J Biol Chem 270:8991-8995
30. Powell W, Reines D (1996) Mutations in the second largest subunit of RNA polymerase II cause 6-azauracil sensitivity in yeast and increased transcriptional arrest in vitro. J Biol Chem 271:6866-6873
31. Reines D (1992) Elongation factor-dependent transcript shortening by template-engaged RNA polymerase II. J Biol Chem 267: 3795-3800
32. Reines D, Chamberlin MJ, Kane CM (1989) Transcription elongation factor SII (TFIIS) enables RNA polymerase II to elongate through a block to transcription in a human gene in vitro. J Biol Chem 264:10799-10809
33. Reines D, Ghanouni P, Li Q, Mote Jr J (1992) The RNA polymerase II elongation complex. Factor-dependent transcription elongation involves nascent RNA cleavage. J Biol Chem 267:15516-15522
34. Rothstein RJ (1983) One step gene disruption in yeast. Methods Enzymol 101:202-211
35. Rudd MD, Izban MG, Luse DS (1994) The active site of RNA polymerase II participates in transcript cleavage within arrested ternary complexes. Proc Natl Acad Sci USA 91:8057-8061
36. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
37. Sancar A (1994) Mechanisms of DNA excision repair. Science 266:1954-1956
38. Schaeffer L, Roy R, Humbert S, Moncollin V, Vermeulen W, Hoeijmakers JHJ, Chambon P, Egly J-M (1993) DNA repair helicase: a component of BTF2 (TFIIH) basic transcription factor. Science 260:58-63
39. Selby CP, Sancar A (1990) Transcription preferentially inhibits nucleotide excision repair of the template DNA strand in vitro. J Biol Chem 265:21330-21336
40. Selby CP, Sancar A (1993) Molecular mechanism of transcription-repair coupling. Science 260:53-58
41. Sherman F, Fink GR, Hicks JB (1986) Methods in yeast genetics. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
42. Svejstrup JQ, Wang Z, Feaver WJ, Wu X, Bushnell DA, Donahue TF, Friedberg EC, Kornberg RD (1995) Different forms of TFIIH for transcription and DNA repair: holo-TFIIH and a nucleotide excision repairosome. Cell 80:21-28
43. Sweder KS, Hanawalt PC (1992) Preferential repair of cyclobutane pyrimidine dimers in the transcribed strand of a gene in yeast chromosomes and plasmids is dependent on transcription. Proc Natl Acad Sci USA 89:10696-10700
44. Sweder KS, Hanawalt PC (1994) The COOH terminus of suppressor of stem loop (SSL2/RAD25) in yeast is essential for overall genomic excision repair and transcription-coupled repair. J Biol Chem 269:1852-1857
45. Sweder KS, Chun R, Mori T, Hanawalt PC (1996a) DNA repair deficiencies associated with mutations in genes encoding subunits of transcription initiation factor TFIIH in yeast. Nucleic Acids Res 24:1540-1546
46. Sweder KS, Verhage RA, Crowley DJ, Crouse GF, Brouwer J, Hanawalt PC (1996b) Mismatch repair mutants in yeast are not defective in transcription-coupled DNA repair of UV-induced DNA damage. Genetics 143:1127-1135
47. Troelstra C, van Gool A, de Wit J, Vermeulen W, Bootsma D, Hoeijmakers JHJ (1992) ERCC6, a member of a subfamily of putative helicases, is involved in Cockayne's syndrome and preferential repair of active genes. Cell 71:939-953
48. Van Gool A, Verhage, R, Swagemakers SMA, van de Putte P, Brouwer J, Troelstra C, Bootsma D, Hoeijmakers JHJ (1994) RAD26, the functional S. cerevisiae homolog of the Cockayne syndrome B gene ERCC6. EMBO J 13:5361-5369
49. Van Hoffen A, Natarajan AT, Mayne LV, van Zeeland AA, Mullenders LHF, Venema J (1993) Deficient repair of the transcribed strand of active genes in Cockayne's syndrome cells. Nucleic Acids Res 21:5890-5895
50. Verhage R, Zeeman A-M, de Groot N, Gleig F, Bang DD, van de Putte P, Brouwer J (1994) The RAD7 and RAD16 genes, which are essential for pyrimidine dimer removal from the silent mating type loci, are also required for repair of the nontranscribed strand of an active gene in Saccharomyces cerevisiae. Mol Cell Biol 14:6135-6142
51. Verhage RA, van Gool AJ, de Groot N, Hoeijmakers JHJ, van de Putte P, Brouwer J (1996a) Double mutants of Saccharomyces cerevisiae with alterations in global genome and transcription-coupled repair. Mol Cell Biol 16:496-502
52. Verhage RA, Zeeman A-M, Lombaerts M, van de Putte P, Brouwer J (1996b) Analysis of gene- and strand-specific repair in the moderately UV-sensitive Saccharomyces cerevisiae rad23 mutant. Mutat Res 362:155-165
53. Venema J, Mullenders LHF, Natarajan AT, van Zeeland AA, Mayne LV (1990) The genetic defect in Cockayne syndrome is associated with a defect in repair of UV-induced DNA damage in transcriptionally active DNA. Proc Natl Acad Sci USA 87:4707-4711
54. Wang Z, Svejstrup JQ, Feaver WJ, Wu X, Kornberg RD, Friedberg EC (1994) Transcription factor b (TFIIH) is required during nucleotide excision repair in yeast. Nature 368:74-76